RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 PKD1P98161 4303 aa4.03□□□□□ -1.76
CPNE3-208ENST00000614678 GIPP09681 153 aaPredicted RBP4.03□□□□□ -1.76
CPNE3-208ENST00000614678 HIST1H1EP10412 219 aaKnown RBP4.03□□□□□ -1.76
CPNE3-208ENST00000614678 MIFP14174 115 aa4.03□□□□□ -1.76
CPNE3-208ENST00000614678 RNASE4P34096 147 aaKnown RBP4.03□□□□□ -1.76
CPNE3-208ENST00000614678 NUTF2P61970 127 aaKnown RBP4.03□□□□□ -1.76
CPNE3-208ENST00000614678 UBE2L3P68036 154 aaKnown RBP4.03□□□□□ -1.76
CPNE3-208ENST00000614678 OR10G4Q8NGN3 311 aa4.03□□□□□ -1.76
CPNE3-208ENST00000614678 OR10G9Q8NGN4 311 aa4.03□□□□□ -1.76
CPNE3-208ENST00000614678 OR10G7Q8NGN6 311 aa4.03□□□□□ -1.76
CPNE3-208ENST00000614678 APLNQ9ULZ1 77 aa4.03□□□□□ -1.76
CPNE3-208ENST00000614678 DEFB131BA0A096LNP1 70 aa4.03□□□□□ -1.76
CPNE3-208ENST00000614678 F6UZH7 168 aa4.03□□□□□ -1.76
CPNE3-208ENST00000614678 CDKN1BP46527 198 aa4.03□□□□□ -1.76
CPNE3-208ENST00000614678 MEOX2P50222 304 aa4.03□□□□□ -1.76
CPNE3-208ENST00000614678 ZFAND2AQ8N6M9 145 aa4.03□□□□□ -1.76
CPNE3-208ENST00000614678 RAB24Q969Q5 203 aa4.03□□□□□ -1.76
CPNE3-208ENST00000614678 GPR82Q96P67 336 aa4.03□□□□□ -1.76
CPNE3-208ENST00000614678 PFDN5Q99471 154 aa4.03□□□□□ -1.76
CPNE3-208ENST00000614678 TIMM9Q9Y5J7 89 aa4.03□□□□□ -1.76
CPNE3-208ENST00000614678 IGHV4-4A0A075B6R2 117 aa4.03□□□□□ -1.76
CPNE3-208ENST00000614678 NUP62P37198 522 aaPredicted RBP4.03□□□□□ -1.76
CPNE3-208ENST00000614678 SCGB1C1Q8TD33 95 aa4.03□□□□□ -1.76
CPNE3-208ENST00000614678 KLK5Q9Y337 293 aaPredicted RBP4.03□□□□□ -1.76
CPNE3-208ENST00000614678 TRAV34A0A0B4J273 112 aa4.02□□□□□ -1.77
CPNE3-208ENST00000614678 M0R2N4 97 aa4.02□□□□□ -1.77
CPNE3-208ENST00000614678 ZNF324O75467 553 aaPredicted RBP4.02□□□□□ -1.77
CPNE3-208ENST00000614678 IFNA5P01569 189 aa4.02□□□□□ -1.77
CPNE3-208ENST00000614678 UBE2G2P60604 165 aa4.02□□□□□ -1.77
CPNE3-208ENST00000614678 TMEM14CQ9P0S9 112 aa4.02□□□□□ -1.77
CPNE3-208ENST00000614678 KLF12Q9Y4X4 402 aa4.02□□□□□ -1.77
CPNE3-208ENST00000614678 PGPA6NDG6 321 aa4.02□□□□□ -1.77
CPNE3-208ENST00000614678 GGTLC3B5MD39 225 aa4.02□□□□□ -1.77
CPNE3-208ENST00000614678 NPIPB6E9PJ23 425 aa4.02□□□□□ -1.77
CPNE3-208ENST00000614678 MPDU1O75352 247 aa4.02□□□□□ -1.77
CPNE3-208ENST00000614678 ZNF80P51504 273 aaPredicted RBP4.02□□□□□ -1.77
CPNE3-208ENST00000614678 RRN3P1Q2M238 152 aa4.02□□□□□ -1.77
CPNE3-208ENST00000614678 PXDC1Q5TGL8 231 aa4.02□□□□□ -1.77
CPNE3-208ENST00000614678 Q6ZTI0 123 aa4.02□□□□□ -1.77
CPNE3-208ENST00000614678 LINC00518Q8N0U6 118 aa4.02□□□□□ -1.77
CPNE3-208ENST00000614678 RNASE8Q8TDE3 154 aaKnown RBP4.02□□□□□ -1.77
CPNE3-208ENST00000614678 C8orf49Q96NF6 230 aa4.02□□□□□ -1.77
CPNE3-208ENST00000614678 GSN-AS1Q9NRJ2 163 aa4.02□□□□□ -1.77
CPNE3-208ENST00000614678 IGLV2-18A0A075B6J9 118 aa4.02□□□□□ -1.77
CPNE3-208ENST00000614678 HOXA5P20719 270 aa4.02□□□□□ -1.77
CPNE3-208ENST00000614678 GOLT1AQ6ZVE7 132 aa4.02□□□□□ -1.77
CPNE3-208ENST00000614678 FAM19A4Q96LR4 140 aa4.02□□□□□ -1.77
CPNE3-208ENST00000614678 LINC00477Q96M19 166 aa4.02□□□□□ -1.77
CPNE3-208ENST00000614678 PPP1R14DQ9NXH3 145 aa4.02□□□□□ -1.77
CPNE3-208ENST00000614678 MDFICQ9P1T7 246 aa4.02□□□□□ -1.77
CPNE3-208ENST00000614678 INSP01308 110 aa4.01□□□□□ -1.77
CPNE3-208ENST00000614678 HBE1P02100 147 aa4.01□□□□□ -1.77
CPNE3-208ENST00000614678 PET100P0DJ07 73 aa4.01□□□□□ -1.77
CPNE3-208ENST00000614678 OR10J6PQ8NGY7 276 aa4.01□□□□□ -1.77
CPNE3-208ENST00000614678 SLC50A1Q9BRV3 221 aa4.01□□□□□ -1.77
CPNE3-208ENST00000614678 C11orf21Q9P2W6 132 aa4.01□□□□□ -1.77
CPNE3-208ENST00000614678 A0A0J9YY99 117 aa4.01□□□□□ -1.77
CPNE3-208ENST00000614678 IGHV3-53P01767 116 aa4.01□□□□□ -1.77
CPNE3-208ENST00000614678 OR2G3Q8NGZ4 309 aa4.01□□□□□ -1.77
CPNE3-208ENST00000614678 GAGE12BA1L429 117 aa4.01□□□□□ -1.77
CPNE3-208ENST00000614678 GNRH2O43555 120 aa4.01□□□□□ -1.77
CPNE3-208ENST00000614678 GAGE7O76087 117 aa4.01□□□□□ -1.77
CPNE3-208ENST00000614678 GAGE12FP0CL80 117 aa4.01□□□□□ -1.77
CPNE3-208ENST00000614678 GAGE12GP0CL81 117 aa4.01□□□□□ -1.77
CPNE3-208ENST00000614678 GAGE12IP0CL82 117 aa4.01□□□□□ -1.77
CPNE3-208ENST00000614678 TMEM88Q6PEY1 159 aa4.01□□□□□ -1.77
CPNE3-208ENST00000614678 C11orf72Q8NBR9 251 aa4.01□□□□□ -1.77
CPNE3-208ENST00000614678 C2CD4CQ8TF44 421 aa4.01□□□□□ -1.77
CPNE3-208ENST00000614678 C1QTNF4Q9BXJ3 329 aa4.01□□□□□ -1.77
CPNE3-208ENST00000614678 NUPR2A6NF83 97 aa4□□□□□ -1.77
CPNE3-208ENST00000614678 DIRC3C9JPN6 131 aa4□□□□□ -1.77
CPNE3-208ENST00000614678 C17orf112F2Z3M2 114 aa4□□□□□ -1.77
CPNE3-208ENST00000614678 CDC34P49427 236 aaPredicted RBP4□□□□□ -1.77
CPNE3-208ENST00000614678 NIPSNAP3BQ9BS92 247 aa4□□□□□ -1.77
CPNE3-208ENST00000614678 ZNF492Q9P255 531 aa4□□□□□ -1.77
CPNE3-208ENST00000614678 GOLT1BQ9Y3E0 138 aa4□□□□□ -1.77
CPNE3-208ENST00000614678 A0A1W2PPV4 95 aa4□□□□□ -1.77
CPNE3-208ENST00000614678 KLLNB2CW77 178 aa4□□□□□ -1.77
CPNE3-208ENST00000614678 SCO1O75880 301 aa4□□□□□ -1.77
CPNE3-208ENST00000614678 IGLV2-11P01706 119 aa4□□□□□ -1.77
CPNE3-208ENST00000614678 SFTA3P0C7M3 94 aa4□□□□□ -1.77
CPNE3-208ENST00000614678 STAG3L2P0CL84 134 aa4□□□□□ -1.77
CPNE3-208ENST00000614678 STAG3L3P0CL85 134 aa4□□□□□ -1.77
CPNE3-208ENST00000614678 SUMO1P63165 101 aaKnown RBP4□□□□□ -1.77
CPNE3-208ENST00000614678 INO80EQ8NBZ0 244 aaPredicted RBP4□□□□□ -1.77
CPNE3-208ENST00000614678 DNAH11Q96DT5 4516 aa4□□□□□ -1.77
CPNE3-208ENST00000614678 CLUHP3Q96NS8 147 aa4□□□□□ -1.77
CPNE3-208ENST00000614678 MRPL16Q9NX20 251 aaKnown RBP4□□□□□ -1.77
CPNE3-208ENST00000614678 DNAH17Q9UFH2 4485 aa4□□□□□ -1.77
CPNE3-208ENST00000614678 DUSP14O95147 198 aaKnown RBP4□□□□□ -1.77
CPNE3-208ENST00000614678 SPART-AS1P0CW21 52 aa4□□□□□ -1.77
CPNE3-208ENST00000614678 CCL20P78556 96 aa4□□□□□ -1.77
CPNE3-208ENST00000614678 LGALSLQ3ZCW2 172 aaPredicted RBP4□□□□□ -1.77
CPNE3-208ENST00000614678 NEU1Q99519 415 aa4□□□□□ -1.77
CPNE3-208ENST00000614678 NAGKQ9UJ70 344 aa4□□□□□ -1.77
CPNE3-208ENST00000614678 A0A096LPF7 62 aa4□□□□□ -1.77
CPNE3-208ENST00000614678 GPX1P07203 203 aa4□□□□□ -1.77
CPNE3-208ENST00000614678 GCHFRP30047 84 aa4□□□□□ -1.77
CPNE3-208ENST00000614678 FAM74A1Q5RGS3 127 aa4□□□□□ -1.77
CPNE3-208ENST00000614678 NHLRC2Q8NBF2 726 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms