RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 AGPAT4-IT1Q9H0P7 198 aa10.68□□□□□ -0.7
USP39-220ENST00000613444 AGRNO00468 2067 aa10.68□□□□□ -0.7
USP39-220ENST00000613444 FBLL1A6NHQ2 334 aaKnown RBP10.67□□□□□ -0.7
USP39-220ENST00000613444 MGST1P10620 155 aaKnown RBP10.67□□□□□ -0.7
USP39-220ENST00000613444 COX8CQ7Z4L0 72 aa10.67□□□□□ -0.7
USP39-220ENST00000613444 Q8TAT8 98 aa10.67□□□□□ -0.7
USP39-220ENST00000613444 ANAPC16Q96DE5 110 aa10.67□□□□□ -0.7
USP39-220ENST00000613444 GPR61Q9BZJ8 451 aa10.67□□□□□ -0.7
USP39-220ENST00000613444 CTDSP1Q9GZU7 261 aa10.67□□□□□ -0.7
USP39-220ENST00000613444 TUBA4BQ9H853 241 aa10.67□□□□□ -0.7
USP39-220ENST00000613444 SMCO4Q9NRQ5 59 aa10.67□□□□□ -0.7
USP39-220ENST00000613444 TRAV2A0A0B4J234 112 aa10.67□□□□□ -0.7
USP39-220ENST00000613444 ZNF705DP0CH99 300 aaPredicted RBP10.67□□□□□ -0.7
USP39-220ENST00000613444 ZNF705BP0CI00 300 aaPredicted RBP10.67□□□□□ -0.7
USP39-220ENST00000613444 ID1P41134 155 aa10.67□□□□□ -0.7
USP39-220ENST00000613444 YPEL4Q96NS1 127 aa10.67□□□□□ -0.7
USP39-220ENST00000613444 PRR25Q96S07 402 aa10.67□□□□□ -0.7
USP39-220ENST00000613444 RNASE7Q9H1E1 156 aaKnown RBP10.67□□□□□ -0.7
USP39-220ENST00000613444 IZUMO1RA6ND01 250 aa10.66□□□□□ -0.7
USP39-220ENST00000613444 ZNF688P0C7X2 276 aa10.66□□□□□ -0.7
USP39-220ENST00000613444 ZC2HC1AQ96GY0 325 aa10.66□□□□□ -0.7
USP39-220ENST00000613444 C8orf49Q96NF6 230 aa10.66□□□□□ -0.7
USP39-220ENST00000613444 PPP1R14DQ9NXH3 145 aa10.66□□□□□ -0.7
USP39-220ENST00000613444 F6UB75 175 aa10.66□□□□□ -0.7
USP39-220ENST00000613444 PAFAH1B2P68402 229 aa10.66□□□□□ -0.7
USP39-220ENST00000613444 RBPMS2Q6ZRY4 209 aaKnown RBP10.66□□□□□ -0.7
USP39-220ENST00000613444 FAM231DQ6ZW35 169 aa10.66□□□□□ -0.7
USP39-220ENST00000613444 OR10G8Q8NGN5 311 aa10.66□□□□□ -0.7
USP39-220ENST00000613444 OSTCQ9NRP0 149 aa10.66□□□□□ -0.7
USP39-220ENST00000613444 ZNF256Q9Y2P7 627 aaPredicted RBP10.66□□□□□ -0.7
USP39-220ENST00000613444 V9GYV3 84 aa10.66□□□□□ -0.7
USP39-220ENST00000613444 STAB1Q9NY15 2570 aa10.65□□□□□ -0.7
USP39-220ENST00000613444 TRAV25A0A0B4J276 109 aa10.65□□□□□ -0.7
USP39-220ENST00000613444 C19orf71A6NCJ1 209 aa10.65□□□□□ -0.7
USP39-220ENST00000613444 CXorf65A6NEN9 183 aa10.65□□□□□ -0.7
USP39-220ENST00000613444 NPIPB6E9PJ23 425 aa10.65□□□□□ -0.7
USP39-220ENST00000613444 H7BYZ3 331 aa10.65□□□□□ -0.7
USP39-220ENST00000613444 CRIP1P50238 77 aa10.65□□□□□ -0.7
USP39-220ENST00000613444 ERVFC1-1P60608 527 aa10.65□□□□□ -0.7
USP39-220ENST00000613444 OR8A1Q8NGG7 326 aa10.65□□□□□ -0.7
USP39-220ENST00000613444 SPATA3Q8NHX4 192 aa10.65□□□□□ -0.7
USP39-220ENST00000613444 PPP1R2P9O14990 202 aa10.65□□□□□ -0.71
USP39-220ENST00000613444 PF4P02776 101 aa10.65□□□□□ -0.71
USP39-220ENST00000613444 SNRPD3P62318 126 aaKnown RBP10.65□□□□□ -0.71
USP39-220ENST00000613444 PSMG4Q5JS54 123 aa10.65□□□□□ -0.71
USP39-220ENST00000613444 IBA57Q5T440 356 aaKnown RBP10.65□□□□□ -0.71
USP39-220ENST00000613444 ZNF492Q9P255 531 aa10.65□□□□□ -0.71
USP39-220ENST00000613444 IGLV1-51P01701 117 aa10.64□□□□□ -0.71
USP39-220ENST00000613444 ZNF138P52744 262 aa10.64□□□□□ -0.71
USP39-220ENST00000613444 SAPCD1Q5SSQ6 148 aa10.64□□□□□ -0.71
USP39-220ENST00000613444 GDF5OSQ5U4N7 250 aa10.64□□□□□ -0.71
USP39-220ENST00000613444 PRR27Q6MZM9 219 aa10.64□□□□□ -0.71
USP39-220ENST00000613444 NUDT10Q8NFP7 164 aa10.64□□□□□ -0.71
USP39-220ENST00000613444 NUDT11Q96G61 164 aa10.64□□□□□ -0.71
USP39-220ENST00000613444 SPAG8Q99932 426 aaPredicted RBP10.64□□□□□ -0.71
USP39-220ENST00000613444 COLCA2A8K830 154 aa10.63□□□□□ -0.71
USP39-220ENST00000613444 SAP30O75446 220 aa10.63□□□□□ -0.71
USP39-220ENST00000613444 PFN1P07737 140 aaKnown RBP10.63□□□□□ -0.71
USP39-220ENST00000613444 CT45A10P0DMU9 189 aa10.63□□□□□ -0.71
USP39-220ENST00000613444 TMEM78Q5T7P6 136 aa10.63□□□□□ -0.71
USP39-220ENST00000613444 FAM19A4Q96LR4 140 aa10.63□□□□□ -0.71
USP39-220ENST00000613444 LINC00477Q96M19 166 aa10.63□□□□□ -0.71
USP39-220ENST00000613444 ELOBQ15370 118 aa10.63□□□□□ -0.71
USP39-220ENST00000613444 OR10J6PQ8NGY7 276 aa10.63□□□□□ -0.71
USP39-220ENST00000613444 ZNF747Q9BV97 191 aa10.63□□□□□ -0.71
USP39-220ENST00000613444 NOTCH3Q9UM47 2321 aa10.62□□□□□ -0.71
USP39-220ENST00000613444 COL6A5A8TX70 2615 aa10.62□□□□□ -0.71
USP39-220ENST00000613444 ZNF80P51504 273 aaPredicted RBP10.62□□□□□ -0.71
USP39-220ENST00000613444 HIST1H1AQ02539 215 aaPredicted RBP10.62□□□□□ -0.71
USP39-220ENST00000613444 C15orf54Q8N8G6 183 aa10.62□□□□□ -0.71
USP39-220ENST00000613444 BIN3Q9NQY0 253 aa10.62□□□□□ -0.71
USP39-220ENST00000613444 URGCP-MRPS24S4R325 110 aa10.62□□□□□ -0.71
USP39-220ENST00000613444 CMYA5Q8N3K9 4069 aa10.62□□□□□ -0.71
USP39-220ENST00000613444 A0A0J9YX75 114 aa10.62□□□□□ -0.71
USP39-220ENST00000613444 LENEPQ9Y5L5 61 aa10.62□□□□□ -0.71
USP39-220ENST00000613444 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.61□□□□□ -0.71
USP39-220ENST00000613444 IMMP2LQ96T52 175 aa10.61□□□□□ -0.71
USP39-220ENST00000613444 OR4C46A6NHA9 309 aa10.6□□□□□ -0.71
USP39-220ENST00000613444 CA1P00915 261 aaPredicted RBP10.6□□□□□ -0.71
USP39-220ENST00000613444 NDFIP1Q9BT67 221 aa10.6□□□□□ -0.71
USP39-220ENST00000613444 SAV1Q9H4B6 383 aaPredicted RBP10.6□□□□□ -0.71
USP39-220ENST00000613444 MAP6D1Q9H9H5 199 aa10.6□□□□□ -0.71
USP39-220ENST00000613444 ZNF705GA8MUZ8 300 aaPredicted RBP10.6□□□□□ -0.71
USP39-220ENST00000613444 CD33P20138 364 aa10.6□□□□□ -0.71
USP39-220ENST00000613444 DEFB131AP59861 70 aa10.6□□□□□ -0.71
USP39-220ENST00000613444 SMUG1Q53HV7 270 aa10.6□□□□□ -0.71
USP39-220ENST00000613444 PRR9Q5T870 116 aa10.6□□□□□ -0.71
USP39-220ENST00000613444 FOXI2Q6ZQN5 318 aa10.6□□□□□ -0.71
USP39-220ENST00000613444 ZFAND2AQ8N6M9 145 aa10.6□□□□□ -0.71
USP39-220ENST00000613444 OR2K2Q8NGT1 345 aa10.6□□□□□ -0.71
USP39-220ENST00000613444 IL36BQ9NZH7 164 aa10.6□□□□□ -0.71
USP39-220ENST00000613444 GATCO43716 136 aaKnown RBP10.59□□□□□ -0.71
USP39-220ENST00000613444 CXCL1P09341 107 aa10.59□□□□□ -0.71
USP39-220ENST00000613444 ODF3L2Q3SX64 289 aa10.59□□□□□ -0.71
USP39-220ENST00000613444 TGIF2-C20orf24A0A0A6YYL0 155 aa10.59□□□□□ -0.71
USP39-220ENST00000613444 TRBV7-9A0A0J9YWB2 115 aa10.59□□□□□ -0.71
USP39-220ENST00000613444 SH2D1AO60880 128 aa10.59□□□□□ -0.71
USP39-220ENST00000613444 P01737 135 aa10.59□□□□□ -0.71
USP39-220ENST00000613444 CRISP2P16562 243 aa10.59□□□□□ -0.71
USP39-220ENST00000613444 FAM3BP58499 235 aaPredicted RBP10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms