RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 MEGF9Q9H1U4 602 aa10.94□□□□□ -0.66
GGA3-220ENST00000613421 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.94□□□□□ -0.665e-7■■■■□ 20.8
GGA3-220ENST00000613421 ZNF491Q8N8L2 437 aa10.94□□□□□ -0.66
GGA3-220ENST00000613421 Q5PR19 223 aa10.94□□□□□ -0.66
GGA3-220ENST00000613421 SYNJ2BPP57105 145 aa10.93□□□□□ -0.66
GGA3-220ENST00000613421 DOPEY2Q9Y3R5 2298 aa10.93□□□□□ -0.66
GGA3-220ENST00000613421 LTAP01374 205 aa10.93□□□□□ -0.66
GGA3-220ENST00000613421 A0A087WWL8 130 aa10.93□□□□□ -0.66
GGA3-220ENST00000613421 SNHG12Q9BXW3 62 aa10.93□□□□□ -0.66
GGA3-220ENST00000613421 IGHV1-24A0A0C4DH33 117 aa10.92□□□□□ -0.66
GGA3-220ENST00000613421 GRNP28799 593 aaKnown RBP10.92□□□□□ -0.66
GGA3-220ENST00000613421 MRPL51Q4U2R6 128 aaKnown RBP10.92□□□□□ -0.66
GGA3-220ENST00000613421 STPG4Q8N801 248 aa10.92□□□□□ -0.66
GGA3-220ENST00000613421 KMT2EQ8IZD2 1858 aa10.92□□□□□ -0.66
GGA3-220ENST00000613421 SAP30O75446 220 aa10.92□□□□□ -0.66
GGA3-220ENST00000613421 SEM1Q6ZVN7 128 aa10.92□□□□□ -0.66
GGA3-220ENST00000613421 PYGO2Q9BRQ0 406 aa10.92□□□□□ -0.66
GGA3-220ENST00000613421 CMC4P56277 68 aaPredicted RBP10.92□□□□□ -0.66
GGA3-220ENST00000613421 NSUN5P1Q3KNT7 163 aa10.92□□□□□ -0.66
GGA3-220ENST00000613421 IGLC2P0DOY2 106 aa10.91□□□□□ -0.66
GGA3-220ENST00000613421 IGLC3P0DOY3 106 aa10.91□□□□□ -0.66
GGA3-220ENST00000613421 KLHL30-AS1Q8NEE0 82 aa10.91□□□□□ -0.66
GGA3-220ENST00000613421 NDUFA4O00483 81 aa10.91□□□□□ -0.66
GGA3-220ENST00000613421 C1orf122Q6ZSJ8 110 aa10.91□□□□□ -0.66
GGA3-220ENST00000613421 LCNL1Q6ZST4 164 aa10.91□□□□□ -0.66
GGA3-220ENST00000613421 PCNX3Q9H6A9 2034 aa10.91□□□□□ -0.66
GGA3-220ENST00000613421 TMEM238C9JI98 176 aa10.91□□□□□ -0.66
GGA3-220ENST00000613421 HTN3P15516 51 aa10.91□□□□□ -0.66
GGA3-220ENST00000613421 KIR3DS1Q14943 382 aa10.91□□□□□ -0.66
GGA3-220ENST00000613421 C11orf1Q9H5F2 150 aa10.91□□□□□ -0.66
GGA3-220ENST00000613421 TRBV7-9A0A0J9YWB2 115 aa10.9□□□□□ -0.66
GGA3-220ENST00000613421 CD5LO43866 347 aa10.9□□□□□ -0.66
GGA3-220ENST00000613421 UBE2V1Q13404 147 aa10.9□□□□□ -0.66
GGA3-220ENST00000613421 FAM120AOSQ5T036 256 aa10.9□□□□□ -0.66
GGA3-220ENST00000613421 PLEKHB2Q96CS7 222 aa10.9□□□□□ -0.66
GGA3-220ENST00000613421 SCGB1A1P11684 91 aa10.9□□□□□ -0.66
GGA3-220ENST00000613421 TEX43Q6ZNM6 134 aa10.9□□□□□ -0.66
GGA3-220ENST00000613421 Q8N8P6 123 aa10.9□□□□□ -0.66
GGA3-220ENST00000613421 IGHV4-39P01824 125 aa10.9□□□□□ -0.66
GGA3-220ENST00000613421 TCF15Q12870 199 aa10.9□□□□□ -0.66
GGA3-220ENST00000613421 CFAP161Q6P656 301 aa10.9□□□□□ -0.66
GGA3-220ENST00000613421 PRSS57Q6UWY2 283 aa10.9□□□□□ -0.66
GGA3-220ENST00000613421 TRGV1A0A0A0MS02 117 aa10.9□□□□□ -0.66
GGA3-220ENST00000613421 ADARB2-AS1A8MUL3 147 aa10.9□□□□□ -0.66
GGA3-220ENST00000613421 RNF223E7ERA6 249 aa10.9□□□□□ -0.66
GGA3-220ENST00000613421 INSP01308 110 aa10.9□□□□□ -0.66
GGA3-220ENST00000613421 C17orf77Q96MU5 243 aa10.9□□□□□ -0.66
GGA3-220ENST00000613421 VGLL1Q99990 258 aa10.9□□□□□ -0.66
GGA3-220ENST00000613421 CHAC1Q9BUX1 264 aa10.9□□□□□ -0.66
GGA3-220ENST00000613421 HOXB4P17483 251 aaPredicted RBP10.89□□□□□ -0.67
GGA3-220ENST00000613421 GAGE13Q4V321 117 aa10.89□□□□□ -0.67
GGA3-220ENST00000613421 CRIP3Q6Q6R5 217 aa10.89□□□□□ -0.67
GGA3-220ENST00000613421 OR11H6Q8NGC7 330 aa10.89□□□□□ -0.67
GGA3-220ENST00000613421 RIPPLY3P57055 190 aa10.89□□□□□ -0.67
GGA3-220ENST00000613421 RPL36AP83881 106 aaKnown RBP10.89□□□□□ -0.67
GGA3-220ENST00000613421 MTURNQ8N3F0 131 aa10.89□□□□□ -0.67
GGA3-220ENST00000613421 WIPF2Q8TF74 440 aaPredicted RBP10.89□□□□□ -0.67
GGA3-220ENST00000613421 RPL36ALQ969Q0 106 aaKnown RBP10.89□□□□□ -0.67
GGA3-220ENST00000613421 CHCHD5Q9BSY4 110 aa10.89□□□□□ -0.67
GGA3-220ENST00000613421 COA6Q5JTJ3 125 aaKnown RBP10.88□□□□□ -0.67
GGA3-220ENST00000613421 SIGLEC8Q9NYZ4 499 aa10.88□□□□□ -0.67
GGA3-220ENST00000613421 ERG28Q9UKR5 140 aa10.88□□□□□ -0.67
GGA3-220ENST00000613421 COX11Q9Y6N1 276 aa10.88□□□□□ -0.67
GGA3-220ENST00000613421 DEFB131AP59861 70 aa10.88□□□□□ -0.67
GGA3-220ENST00000613421 PAX2Q02962 417 aa10.88□□□□□ -0.67
GGA3-220ENST00000613421 NDUFS7O75251 213 aa10.88□□□□□ -0.67
GGA3-220ENST00000613421 WISP2O76076 250 aa10.88□□□□□ -0.67
GGA3-220ENST00000613421 RBMY1BA6NDE4 496 aaKnown RBP10.88□□□□□ -0.67
GGA3-220ENST00000613421 RBMY1EA6NEQ0 496 aaKnown RBP10.88□□□□□ -0.67
GGA3-220ENST00000613421 TSPAN13O95857 204 aa10.88□□□□□ -0.67
GGA3-220ENST00000613421 RBMY1DP0C7P1 496 aaKnown RBP10.88□□□□□ -0.67
GGA3-220ENST00000613421 RBMY1A1P0DJD3 496 aaKnown RBP10.88□□□□□ -0.67
GGA3-220ENST00000613421 RBMY1CP0DJD4 496 aa10.88□□□□□ -0.67
GGA3-220ENST00000613421 IGLL1P15814 213 aa10.88□□□□□ -0.67
GGA3-220ENST00000613421 EML6Q6ZMW3 1958 aa10.87□□□□□ -0.67
GGA3-220ENST00000613421 TRAV8-2A0A0B4J237 113 aa10.87□□□□□ -0.67
GGA3-220ENST00000613421 A0A0U1RRA0 63 aa10.87□□□□□ -0.67
GGA3-220ENST00000613421 Q6ZPA2 131 aa10.87□□□□□ -0.67
GGA3-220ENST00000613421 RITA1Q96K30 269 aa10.87□□□□□ -0.67
GGA3-220ENST00000613421 NCKAP5O14513 1909 aa10.87□□□□□ -0.67
GGA3-220ENST00000613421 MSMPQ1L6U9 139 aa10.87□□□□□ -0.67
GGA3-220ENST00000613421 SP5Q6BEB4 398 aaPredicted RBP10.87□□□□□ -0.67
GGA3-220ENST00000613421 MAPK1IP1LQ8NDC0 245 aa10.87□□□□□ -0.67
GGA3-220ENST00000613421 PLCE1Q9P212 2302 aa10.87□□□□□ -0.67
GGA3-220ENST00000613421 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.87□□□□□ -0.67
GGA3-220ENST00000613421 A8MWV9 139 aa10.87□□□□□ -0.67
GGA3-220ENST00000613421 MORN5Q5VZ52 161 aa10.87□□□□□ -0.67
GGA3-220ENST00000613421 MORN3Q6PF18 240 aaPredicted RBP10.87□□□□□ -0.67
GGA3-220ENST00000613421 C2orf66Q6UXQ4 117 aa10.87□□□□□ -0.67
GGA3-220ENST00000613421 TRPT1Q86TN4 253 aaKnown RBP10.87□□□□□ -0.67
GGA3-220ENST00000613421 NPYP01303 97 aa10.87□□□□□ -0.67
GGA3-220ENST00000613421 GP9P14770 177 aa10.87□□□□□ -0.67
GGA3-220ENST00000613421 PATE2Q6UY27 113 aa10.87□□□□□ -0.67
GGA3-220ENST00000613421 I3L2K1 104 aa10.86□□□□□ -0.67
GGA3-220ENST00000613421 SPINK13Q1W4C9 94 aa10.86□□□□□ -0.67
GGA3-220ENST00000613421 ANXA2RQ3ZCQ2 193 aa10.86□□□□□ -0.67
GGA3-220ENST00000613421 CDPF1Q6NVV7 123 aa10.86□□□□□ -0.67
GGA3-220ENST00000613421 ODF3L1Q8IXM7 274 aa10.86□□□□□ -0.67
GGA3-220ENST00000613421 PRADC1Q9BSG0 188 aa10.86□□□□□ -0.67
GGA3-220ENST00000613421 NOTCH3Q9UM47 2321 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms