RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 NUFIP1Q9UHK0 495 aaKnown RBP2.79□□□□□ -1.96
LINC00540-201ENST00000611481 IGKV3-7A0A075B6H7 116 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 FAM223BA6NKX1 122 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 KLLNB2CW77 178 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 KRBOX1C9JBD0 128 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 K7EPK0 472 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 COPEO14579 308 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 SLC22A1O15245 554 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 HBZP02008 142 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 HMGN1P05114 100 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 ATP5G1P05496 136 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 CXCL2P19875 107 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 FXYD6P3P58550 94 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 DAD1P61803 113 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 CAV1Q03135 178 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 TMEM183BQ1AE95 376 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 UBE2NLQ5JXB2 153 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 SLC25A30Q5SVS4 291 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 GLYATQ6IB77 296 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 FAM223AQ8IWN6 122 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 TMEM183AQ8IXX5 376 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 Q8IYB0 196 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 GHSRQ92847 366 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 PTX4Q96A99 478 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 TMEM101Q96IK0 257 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 AMELYQ99218 206 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 SIGMAR1Q99720 223 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 GPR84Q9NQS5 396 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 RBM12B-AS1Q9P1G2 102 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 SNX12Q9UMY4 172 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 YTHDF2Q9Y5A9 579 aaKnown RBP2.78□□□□□ -1.96
LINC00540-201ENST00000611481 S4R3C0 116 aa2.78□□□□□ -1.96
LINC00540-201ENST00000611481 DEGS1O15121 323 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 GYG2O15488 501 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 COX7A2P2O60397 106 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 GTF2F2P13984 249 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 PPIBP23284 216 aaKnown RBP2.77□□□□□ -1.97
LINC00540-201ENST00000611481 GADD45AP24522 165 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 CRYBA4P53673 196 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 DEFB131AP59861 70 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 ERCC8Q13216 396 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 C15orf32Q32M92 178 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 ACOT6Q3I5F7 207 aaPredicted RBP2.77□□□□□ -1.97
LINC00540-201ENST00000611481 CENPWQ5EE01 88 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 Q6P435 159 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 ZNF773Q6PK81 442 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 NEGR1Q7Z3B1 354 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 TMEM144Q7Z5S9 345 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 MSRB3Q8IXL7 192 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 C14orf178Q8N769 122 aaPredicted RBP2.77□□□□□ -1.97
LINC00540-201ENST00000611481 ZNF439Q8NDP4 499 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 OR51T1Q8NGJ9 327 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 OR2T4Q8NH00 348 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 TNFAIP8L1Q8WVP5 186 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 ARL11Q969Q4 196 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 LINC01587Q99440 93 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 SOSTQ9BQB4 213 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 UPK3BQ9BT76 320 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 HMG20AQ9NP66 347 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 C14orf166Q9Y224 244 aaKnown RBP2.77□□□□□ -1.97
LINC00540-201ENST00000611481 CARHSP1Q9Y2V2 147 aaKnown RBP2.77□□□□□ -1.97
LINC00540-201ENST00000611481 PRELID3BQ9Y3B1 194 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 UFC1Q9Y3C8 167 aa2.77□□□□□ -1.97
LINC00540-201ENST00000611481 IGLV1-50A0A075B6I6 118 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 TRAV3A0A0B4J244 114 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 TMEM189A5PLL7 270 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 NDUFC2-KCTD14E9PQ53 114 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 OR7C1O76099 320 aaPredicted RBP2.76□□□□□ -1.97
LINC00540-201ENST00000611481 CYB5AP00167 134 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 GYPBP06028 91 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 SCGB1C2P0DMR2 95 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 GPX2P18283 190 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 NMUP48645 174 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 POLR2JP52435 117 aaKnown RBP2.76□□□□□ -1.97
LINC00540-201ENST00000611481 LYZP61626 148 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 CDK10Q15131 360 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 SSX1Q16384 188 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 NXNL2Q5VZ03 156 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 SLC35F6Q8N357 371 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 C20orf203Q8NBC4 194 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 OR9I1Q8NGQ6 314 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 OR4X1Q8NH49 305 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 CIRBP-AS1Q8TBR5 109 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 SCGB1C1Q8TD33 95 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 FXYD5Q96DB9 178 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 ACY3Q96HD9 319 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 SFRP2Q96HF1 295 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 SLC35E1Q96K37 410 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 YPEL4Q96NS1 127 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 ANAPC13Q9BS18 74 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 EIF5A2Q9GZV4 153 aaKnown RBP2.76□□□□□ -1.97
LINC00540-201ENST00000611481 POMPQ9Y244 141 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 UTP11Q9Y3A2 253 aaKnown RBP2.76□□□□□ -1.97
LINC00540-201ENST00000611481 MRPS16Q9Y3D3 137 aaKnown RBP2.76□□□□□ -1.97
LINC00540-201ENST00000611481 FAM32AQ9Y421 112 aaKnown RBP2.76□□□□□ -1.97
LINC00540-201ENST00000611481 SSPOA2VEC9 5147 aa2.76□□□□□ -1.97
LINC00540-201ENST00000611481 A0A1B0GV50 99 aa2.75□□□□□ -1.97
LINC00540-201ENST00000611481 INS-IGF2F8WCM5 200 aa2.75□□□□□ -1.97
LINC00540-201ENST00000611481 TMEM250H0YL14 139 aa2.75□□□□□ -1.97
LINC00540-201ENST00000611481 YIF1AO95070 293 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms