RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 TRAV12-2A0A075B6T6 113 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 IGKV1OR2-108A0A075B7D4 117 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 FXYD6-FXYD2A0A087WZ82 144 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 TRAV8-2A0A0B4J237 113 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 PLAC8L1A1L4L8 177 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 LINC00862A6NCI5 91 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 FNDC10F2Z333 226 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 H3BRN7 92 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 SIVA1O15304 175 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 ARPC5O15511 151 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 SYNGR2O43760 224 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 PITX3O75364 302 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 OR5G3P0C626 314 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 AZU1P20160 251 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 LEPP41159 167 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 PLP1P60201 277 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 DAZ2Q13117 558 aaKnown RBP4.36□□□□□ -1.71
CUX1-220ENST00000607092 CLLU1Q5K131 121 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 CYP2G1PQ6ZSU1 146 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 BPIFA4PQ86YQ2 179 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 LYPD1Q8N2G4 141 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 LINC00612Q8N6U2 182 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 PHYHIPLQ96FC7 376 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 C18orf15Q96N68 181 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 ODF3Q96PU9 254 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 PYGO2Q9BRQ0 406 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 SLC25A39Q9BZJ4 359 aaPredicted RBP4.36□□□□□ -1.71
CUX1-220ENST00000607092 ARL6Q9H0F7 186 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 MED9Q9NWA0 146 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 ZNF586Q9NXT0 402 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 PXMP4Q9Y6I8 212 aa4.36□□□□□ -1.71
CUX1-220ENST00000607092 TRGV2A0A075B6R0 118 aa4.35□□□□□ -1.71
CUX1-220ENST00000607092 KANTRA0A1W2PQU2 76 aa4.35□□□□□ -1.71
CUX1-220ENST00000607092 SMCO3A2RU48 225 aa4.35□□□□□ -1.71
CUX1-220ENST00000607092 FAM25EA8MYX2 175 aa4.35□□□□□ -1.71
CUX1-220ENST00000607092 K7EPK0 472 aa4.35□□□□□ -1.71
CUX1-220ENST00000607092 WRBO00258 174 aa4.35□□□□□ -1.71
CUX1-220ENST00000607092 TSC22D2O75157 780 aa4.35□□□□□ -1.71
CUX1-220ENST00000607092 HOXB5P09067 269 aa4.35□□□□□ -1.71
CUX1-220ENST00000607092 LINC00869P0C866 280 aa4.35□□□□□ -1.71
CUX1-220ENST00000607092 IAPPP10997 89 aa4.35□□□□□ -1.71
CUX1-220ENST00000607092 LINC00315P59091 139 aa4.35□□□□□ -1.71
CUX1-220ENST00000607092 RAB31Q13636 194 aa4.35□□□□□ -1.71
CUX1-220ENST00000607092 GUK1Q16774 197 aa4.35□□□□□ -1.71
CUX1-220ENST00000607092 ESRGQ1W209 222 aa4.35□□□□□ -1.71
CUX1-220ENST00000607092 IAH1Q2TAA2 248 aaPredicted RBP4.35□□□□□ -1.71
CUX1-220ENST00000607092 EIF5AL1Q6IS14 154 aaKnown RBP4.35□□□□□ -1.71
CUX1-220ENST00000607092 RNF182Q8N6D2 247 aa4.35□□□□□ -1.71
CUX1-220ENST00000607092 RAB24Q969Q5 203 aa4.35□□□□□ -1.71
CUX1-220ENST00000607092 AQP10Q96PS8 301 aa4.35□□□□□ -1.71
CUX1-220ENST00000607092 NPVFQ9HCQ7 196 aa4.35□□□□□ -1.71
CUX1-220ENST00000607092 ICOSQ9Y6W8 199 aa4.35□□□□□ -1.71
CUX1-220ENST00000607092 A0A0J9YY99 117 aa4.34□□□□□ -1.71
CUX1-220ENST00000607092 GAGE12BA1L429 117 aa4.34□□□□□ -1.71
CUX1-220ENST00000607092 RNF222A6NCQ9 220 aa4.34□□□□□ -1.71
CUX1-220ENST00000607092 E5RGE8 158 aa4.34□□□□□ -1.71
CUX1-220ENST00000607092 CCSO14618 274 aa4.34□□□□□ -1.71
CUX1-220ENST00000607092 BCL2L11O43521 198 aa4.34□□□□□ -1.71
CUX1-220ENST00000607092 GAGE7O76087 117 aa4.34□□□□□ -1.71
CUX1-220ENST00000607092 SLC25A5P05141 298 aaKnown RBP4.34□□□□□ -1.71
CUX1-220ENST00000607092 GAGE12FP0CL80 117 aa4.34□□□□□ -1.71
CUX1-220ENST00000607092 GAGE12GP0CL81 117 aa4.34□□□□□ -1.71
CUX1-220ENST00000607092 GAGE12IP0CL82 117 aa4.34□□□□□ -1.71
CUX1-220ENST00000607092 EVI2AP22794 236 aa4.34□□□□□ -1.71
CUX1-220ENST00000607092 KRTAP10-2P60368 255 aa4.34□□□□□ -1.71
CUX1-220ENST00000607092 DLK1P80370 383 aa4.34□□□□□ -1.71
CUX1-220ENST00000607092 SPANXN5Q5MJ07 72 aa4.34□□□□□ -1.71
CUX1-220ENST00000607092 SLC7A5P1Q8MH63 180 aa4.34□□□□□ -1.71
CUX1-220ENST00000607092 C10orf126Q8N4M7 172 aa4.34□□□□□ -1.71
CUX1-220ENST00000607092 STOML3Q8TAV4 291 aa4.34□□□□□ -1.71
CUX1-220ENST00000607092 GGACTQ9BVM4 153 aa4.34□□□□□ -1.71
CUX1-220ENST00000607092 ARV1Q9H2C2 271 aa4.34□□□□□ -1.71
CUX1-220ENST00000607092 GSKIPQ9P0R6 139 aa4.34□□□□□ -1.71
CUX1-220ENST00000607092 MBD2Q9UBB5 411 aa4.34□□□□□ -1.71
CUX1-220ENST00000607092 PRSS46E5RG02 174 aa4.33□□□□□ -1.72
CUX1-220ENST00000607092 H0YIZ8 118 aa4.33□□□□□ -1.72
CUX1-220ENST00000607092 COX7A2P2O60397 106 aa4.33□□□□□ -1.72
CUX1-220ENST00000607092 PVALBP20472 110 aaPredicted RBP4.33□□□□□ -1.72
CUX1-220ENST00000607092 GATA2P23769 480 aaPredicted RBP4.33□□□□□ -1.72
CUX1-220ENST00000607092 TAS2R30P59541 319 aa4.33□□□□□ -1.72
CUX1-220ENST00000607092 RAB32Q13637 225 aa4.33□□□□□ -1.72
CUX1-220ENST00000607092 ICAM4Q14773 271 aa4.33□□□□□ -1.72
CUX1-220ENST00000607092 MRPL23Q16540 153 aaKnown RBP4.33□□□□□ -1.72
CUX1-220ENST00000607092 LRRC37A5PQ49AS3 106 aa4.33□□□□□ -1.72
CUX1-220ENST00000607092 Q5VSD8 79 aa4.33□□□□□ -1.72
CUX1-220ENST00000607092 GFI1BQ5VTD9 330 aa4.33□□□□□ -1.72
CUX1-220ENST00000607092 OR10P1Q8NGE3 313 aa4.33□□□□□ -1.72
CUX1-220ENST00000607092 NTN5Q8WTR8 489 aaPredicted RBP4.33□□□□□ -1.72
CUX1-220ENST00000607092 MRPL53Q96EL3 112 aaKnown RBP4.33□□□□□ -1.72
CUX1-220ENST00000607092 C17orf77Q96MU5 243 aa4.33□□□□□ -1.72
CUX1-220ENST00000607092 UHRF2Q96PU4 802 aa4.33□□□□□ -1.72
CUX1-220ENST00000607092 LINC00467Q9BRT7 94 aa4.33□□□□□ -1.72
CUX1-220ENST00000607092 KRTAP1-5Q9BYS1 174 aa4.33□□□□□ -1.72
CUX1-220ENST00000607092 ZNF331Q9NQX6 463 aaPredicted RBP4.33□□□□□ -1.72
CUX1-220ENST00000607092 PRO0255Q9UI72 69 aa4.33□□□□□ -1.72
CUX1-220ENST00000607092 PRELID1Q9Y255 219 aa4.33□□□□□ -1.72
CUX1-220ENST00000607092 LY96Q9Y6Y9 160 aa4.33□□□□□ -1.72
CUX1-220ENST00000607092 A0A087WTM6 91 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 A0A096LPF7 62 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 TRAV5A0A0B4J249 113 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms