RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 SCGB1C1Q8TD33 95 aa18.3■□□□□ 0.52
PNKP-216ENST00000601816 FXYD5Q96DB9 178 aa18.3■□□□□ 0.52
PNKP-216ENST00000601816 ATG101Q9BSB4 218 aa18.3■□□□□ 0.52
PNKP-216ENST00000601816 SMIM3Q9BZL3 60 aa18.3■□□□□ 0.52
PNKP-216ENST00000601816 AGPAT4-IT1Q9H0P7 198 aa18.3■□□□□ 0.52
PNKP-216ENST00000601816 MBD2Q9UBB5 411 aa18.3■□□□□ 0.52
PNKP-216ENST00000601816 IGKV2-40A0A087WW87 121 aaPredicted RBP18.29■□□□□ 0.52
PNKP-216ENST00000601816 IGKV2D-40P01614 121 aaPredicted RBP18.29■□□□□ 0.52
PNKP-216ENST00000601816 FFAR4Q5NUL3 377 aa18.29■□□□□ 0.52
PNKP-216ENST00000601816 C9orf47Q6ZRZ4 202 aa18.29■□□□□ 0.52
PNKP-216ENST00000601816 RNF141Q8WVD5 230 aa18.29■□□□□ 0.52
PNKP-216ENST00000601816 FAM19A4Q96LR4 140 aa18.29■□□□□ 0.52
PNKP-216ENST00000601816 KLLNB2CW77 178 aa18.28■□□□□ 0.52
PNKP-216ENST00000601816 OR7C2O60412 319 aa18.28■□□□□ 0.52
PNKP-216ENST00000601816 NUDT3O95989 172 aa18.28■□□□□ 0.52
PNKP-216ENST00000601816 LINC00612Q8N6U2 182 aa18.28■□□□□ 0.52
PNKP-216ENST00000601816 FAM3BP58499 235 aaPredicted RBP18.27■□□□□ 0.52
PNKP-216ENST00000601816 BTN1A1Q13410 526 aa18.27■□□□□ 0.52
PNKP-216ENST00000601816 TMEM78Q5T7P6 136 aa18.27■□□□□ 0.52
PNKP-216ENST00000601816 PHYHIPLQ96FC7 376 aa18.27■□□□□ 0.52
PNKP-216ENST00000601816 GAGE12BA1L429 117 aa18.26■□□□□ 0.51
PNKP-216ENST00000601816 GAGE7O76087 117 aa18.26■□□□□ 0.51
PNKP-216ENST00000601816 GAGE12FP0CL80 117 aa18.26■□□□□ 0.51
PNKP-216ENST00000601816 GAGE12GP0CL81 117 aa18.26■□□□□ 0.51
PNKP-216ENST00000601816 GAGE12IP0CL82 117 aa18.26■□□□□ 0.51
PNKP-216ENST00000601816 CRISP2P16562 243 aa18.26■□□□□ 0.51
PNKP-216ENST00000601816 CD300CQ08708 224 aa18.26■□□□□ 0.51
PNKP-216ENST00000601816 DNAH2Q9P225 4427 aa18.25■□□□□ 0.51
PNKP-216ENST00000601816 RNASE4P34096 147 aaKnown RBP18.25■□□□□ 0.51
PNKP-216ENST00000601816 UBE2L3P68036 154 aaKnown RBP18.25■□□□□ 0.51
PNKP-216ENST00000601816 Q6ZR54 194 aa18.25■□□□□ 0.51
PNKP-216ENST00000601816 VGLL1Q99990 258 aa18.25■□□□□ 0.51
PNKP-216ENST00000601816 ALG5Q9Y673 324 aa18.25■□□□□ 0.51
PNKP-216ENST00000601816 RTL8CO15255 209 aa18.24■□□□□ 0.51
PNKP-216ENST00000601816 ZNF324O75467 553 aaPredicted RBP18.24■□□□□ 0.51
PNKP-216ENST00000601816 GPX1P07203 203 aa18.24■□□□□ 0.51
PNKP-216ENST00000601816 NMBP08949 121 aa18.24■□□□□ 0.51
PNKP-216ENST00000601816 TAS2R45P59539 299 aa18.24■□□□□ 0.51
PNKP-216ENST00000601816 DAZ2Q13117 558 aaKnown RBP18.24■□□□□ 0.51
PNKP-216ENST00000601816 KHDC3LQ587J8 217 aa18.24■□□□□ 0.51
PNKP-216ENST00000601816 ZNF680Q8NEM1 530 aa18.24■□□□□ 0.51
PNKP-216ENST00000601816 LINC00467Q9BRT7 94 aa18.24■□□□□ 0.51
PNKP-216ENST00000601816 CSN1S1P47710 185 aa18.23■□□□□ 0.51
PNKP-216ENST00000601816 OR5I1Q13606 314 aa18.23■□□□□ 0.51
PNKP-216ENST00000601816 ZNF503Q96F45 646 aa18.23■□□□□ 0.51
PNKP-216ENST00000601816 ZNF492Q9P255 531 aa18.23■□□□□ 0.51
PNKP-216ENST00000601816 NACAE9PAV3 2078 aa18.22■□□□□ 0.51
PNKP-216ENST00000601816 FAT2Q9NYQ8 4349 aa18.22■□□□□ 0.51
PNKP-216ENST00000601816 PRSS29PA6NIE9 313 aa18.22■□□□□ 0.51
PNKP-216ENST00000601816 RANP62826 216 aaKnown RBP18.22■□□□□ 0.51
PNKP-216ENST00000601816 LYPD1Q8N2G4 141 aa18.22■□□□□ 0.51
PNKP-216ENST00000601816 EIF4E3Q8N5X7 224 aaKnown RBP18.22■□□□□ 0.51
PNKP-216ENST00000601816 ZFAND2AQ8N6M9 145 aa18.22■□□□□ 0.51
PNKP-216ENST00000601816 WFDC1Q9HC57 220 aa18.22■□□□□ 0.51
PNKP-216ENST00000601816 GSN-AS1Q9NRJ2 163 aa18.22■□□□□ 0.51
PNKP-216ENST00000601816 PTTG1O95997 202 aa18.21■□□□□ 0.51
PNKP-216ENST00000601816 M6PRP20645 277 aa18.21■□□□□ 0.51
PNKP-216ENST00000601816 ZNF138P52744 262 aa18.21■□□□□ 0.51
PNKP-216ENST00000601816 CCL18P55774 89 aa18.21■□□□□ 0.51
PNKP-216ENST00000601816 Q6ZTI0 123 aa18.21■□□□□ 0.51
PNKP-216ENST00000601816 Q9H3A6 140 aa18.21■□□□□ 0.51
PNKP-216ENST00000601816 DNAH17Q9UFH2 4485 aa18.21■□□□□ 0.51
PNKP-216ENST00000601816 TRAV26-1A0A087WT03 109 aa18.2■□□□□ 0.5
PNKP-216ENST00000601816 ANXA2RQ3ZCQ2 193 aa18.2■□□□□ 0.5
PNKP-216ENST00000601816 SOHLH1Q5JUK2 328 aa18.2■□□□□ 0.5
PNKP-216ENST00000601816 C11orf72Q8NBR9 251 aa18.2■□□□□ 0.5
PNKP-216ENST00000601816 GNPNAT1Q96EK6 184 aaPredicted RBP18.2■□□□□ 0.5
PNKP-216ENST00000601816 ACOT6Q3I5F7 207 aaPredicted RBP18.19■□□□□ 0.5
PNKP-216ENST00000601816 PRR9Q5T870 116 aa18.19■□□□□ 0.5
PNKP-216ENST00000601816 Q8TAT8 98 aa18.19■□□□□ 0.5
PNKP-216ENST00000601816 TRBV7-9A0A0J9YWB2 115 aa18.18■□□□□ 0.5
PNKP-216ENST00000601816 A0A1B0GVY2 172 aa18.18■□□□□ 0.5
PNKP-216ENST00000601816 RBAKDNA6NC62 111 aa18.18■□□□□ 0.5
PNKP-216ENST00000601816 RGS13O14921 159 aa18.18■□□□□ 0.5
PNKP-216ENST00000601816 HOXA5P20719 270 aa18.18■□□□□ 0.5
PNKP-216ENST00000601816 TMPRSS5Q9H3S3 457 aa18.18■□□□□ 0.5
PNKP-216ENST00000601816 TRGV2A0A075B6R0 118 aa18.17■□□□□ 0.5
PNKP-216ENST00000601816 EIF3GO75821 320 aaKnown RBP eCLIP18.17■□□□□ 0.5
PNKP-216ENST00000601816 ZNRF2Q8NHG8 242 aa18.17■□□□□ 0.5
PNKP-216ENST00000601816 RXFP4Q8TDU9 374 aa18.17■□□□□ 0.5
PNKP-216ENST00000601816 TRGV1A0A0A0MS02 117 aa18.16■□□□□ 0.5
PNKP-216ENST00000601816 A0A0J9YY99 117 aa18.16■□□□□ 0.5
PNKP-216ENST00000601816 A0A1W2PPV4 95 aa18.16■□□□□ 0.5
PNKP-216ENST00000601816 TCL1AP56279 114 aa18.16■□□□□ 0.5
PNKP-216ENST00000601816 C1orf134Q5TEV5 83 aa18.16■□□□□ 0.5
PNKP-216ENST00000601816 MED28Q9H204 178 aa18.16■□□□□ 0.5
PNKP-216ENST00000601816 LINC00588Q9Y4M8 146 aa18.16■□□□□ 0.5
PNKP-216ENST00000601816 IGHV1OR15-1A0A075B7D0 117 aa18.15■□□□□ 0.5
PNKP-216ENST00000601816 IBA57Q5T440 356 aaKnown RBP18.15■□□□□ 0.5
PNKP-216ENST00000601816 ARPC5LQ9BPX5 153 aa18.15■□□□□ 0.5
PNKP-216ENST00000601816 KLF12Q9Y4X4 402 aa18.15■□□□□ 0.5
PNKP-216ENST00000601816 DIRC3C9JPN6 131 aa18.14■□□□□ 0.49
PNKP-216ENST00000601816 RAB2AP61019 212 aa18.14■□□□□ 0.49
PNKP-216ENST00000601816 PQLC2Q6ZP29 291 aa18.14■□□□□ 0.49
PNKP-216ENST00000601816 Q6ZQT7 251 aa18.14■□□□□ 0.49
PNKP-216ENST00000601816 SSX7Q7RTT5 188 aa18.14■□□□□ 0.49
PNKP-216ENST00000601816 HYLS1Q96M11 299 aa18.14■□□□□ 0.49
PNKP-216ENST00000601816 C18orf15Q96N68 181 aa18.14■□□□□ 0.49
PNKP-216ENST00000601816 OTORQ9NRC9 128 aa18.14■□□□□ 0.49
PNKP-216ENST00000601816 TP53TG3Q9ULZ0 132 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms