RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 DNASE2O00115 360 aaPredicted RBP9.4□□□□□ -0.9
UPF1-208ENST00000600012 IGKV2D-40P01614 121 aaPredicted RBP9.4□□□□□ -0.9
UPF1-208ENST00000600012 RBPMS2Q6ZRY4 209 aaKnown RBP9.4□□□□□ -0.9
UPF1-208ENST00000600012 GOLT1AQ6ZVE7 132 aa9.4□□□□□ -0.9
UPF1-208ENST00000600012 HIST1H2BAQ96A08 127 aa9.4□□□□□ -0.9
UPF1-208ENST00000600012 SGK494Q96LW2 274 aa9.4□□□□□ -0.9
UPF1-208ENST00000600012 LINC00479Q96M42 142 aa9.4□□□□□ -0.9
UPF1-208ENST00000600012 SMIM7Q9BQ49 75 aa9.4□□□□□ -0.9
UPF1-208ENST00000600012 TCEAL7Q9BRU2 100 aa9.4□□□□□ -0.9
UPF1-208ENST00000600012 ATG101Q9BSB4 218 aa9.4□□□□□ -0.9
UPF1-208ENST00000600012 SEC11CQ9BY50 192 aa9.4□□□□□ -0.9
UPF1-208ENST00000600012 PRELID1Q9Y255 219 aa9.4□□□□□ -0.9
UPF1-208ENST00000600012 ISLRO14498 428 aa9.39□□□□□ -0.91
UPF1-208ENST00000600012 TSPAN4O14817 238 aa9.39□□□□□ -0.91
UPF1-208ENST00000600012 ZNF688P0C7X2 276 aa9.39□□□□□ -0.91
UPF1-208ENST00000600012 RPL35P42766 123 aaKnown RBP9.39□□□□□ -0.91
UPF1-208ENST00000600012 CSN1S1P47710 185 aa9.39□□□□□ -0.91
UPF1-208ENST00000600012 CNN1P51911 297 aaKnown RBP9.39□□□□□ -0.91
UPF1-208ENST00000600012 DEFB1P60022 68 aa9.39□□□□□ -0.91
UPF1-208ENST00000600012 PSG3Q16557 428 aa9.39□□□□□ -0.91
UPF1-208ENST00000600012 C10orf91Q5T1B1 145 aa9.39□□□□□ -0.91
UPF1-208ENST00000600012 LINC00322Q6ZN03 302 aaPredicted RBP9.39□□□□□ -0.91
UPF1-208ENST00000600012 MRPL53Q96EL3 112 aaKnown RBP9.39□□□□□ -0.91
UPF1-208ENST00000600012 RETNQ9HD89 108 aa9.39□□□□□ -0.91
UPF1-208ENST00000600012 CARHSP1Q9Y2V2 147 aaKnown RBP9.39□□□□□ -0.91
UPF1-208ENST00000600012 AGRNO00468 2067 aa9.38□□□□□ -0.91
UPF1-208ENST00000600012 TRAV8-1A0A0A6YYK1 113 aa9.38□□□□□ -0.91
UPF1-208ENST00000600012 PGPEP1LA6NFU8 196 aa9.38□□□□□ -0.91
UPF1-208ENST00000600012 APOC3P02656 99 aa9.38□□□□□ -0.91
UPF1-208ENST00000600012 S100A1P23297 94 aa9.38□□□□□ -0.91
UPF1-208ENST00000600012 PAFAH1B2P68402 229 aa9.38□□□□□ -0.91
UPF1-208ENST00000600012 GUCA2BQ16661 112 aa9.38□□□□□ -0.91
UPF1-208ENST00000600012 SAMD13Q5VXD3 122 aa9.38□□□□□ -0.91
UPF1-208ENST00000600012 ZNF738Q8NE65 137 aa9.38□□□□□ -0.91
UPF1-208ENST00000600012 TRBV20OR9-2A0A075B6H5 130 aa9.37□□□□□ -0.91
UPF1-208ENST00000600012 ID1P41134 155 aa9.37□□□□□ -0.91
UPF1-208ENST00000600012 UBE2G1P62253 170 aa9.37□□□□□ -0.91
UPF1-208ENST00000600012 TMEM183BQ1AE95 376 aa9.37□□□□□ -0.91
UPF1-208ENST00000600012 CENPWQ5EE01 88 aa9.37□□□□□ -0.91
UPF1-208ENST00000600012 PSMG4Q5JS54 123 aa9.37□□□□□ -0.91
UPF1-208ENST00000600012 IGF2BP2-AS1Q96M15 143 aa9.37□□□□□ -0.91
UPF1-208ENST00000600012 FAM110AQ9BQ89 295 aa9.37□□□□□ -0.91
UPF1-208ENST00000600012 CLEC5AQ9NY25 188 aa9.37□□□□□ -0.91
UPF1-208ENST00000600012 TRAV2A0A0B4J234 112 aa9.36□□□□□ -0.91
UPF1-208ENST00000600012 TRAV25A0A0B4J276 109 aa9.36□□□□□ -0.91
UPF1-208ENST00000600012 F6UB75 175 aa9.36□□□□□ -0.91
UPF1-208ENST00000600012 ZNF705DP0CH99 300 aaPredicted RBP9.36□□□□□ -0.91
UPF1-208ENST00000600012 ZNF705BP0CI00 300 aaPredicted RBP9.36□□□□□ -0.91
UPF1-208ENST00000600012 ERCC8Q13216 396 aa9.36□□□□□ -0.91
UPF1-208ENST00000600012 FAM74A3Q4VXF1 159 aa9.36□□□□□ -0.91
UPF1-208ENST00000600012 PRNTQ86SH4 94 aa9.36□□□□□ -0.91
UPF1-208ENST00000600012 Q86TA4 180 aa9.36□□□□□ -0.91
UPF1-208ENST00000600012 TMEM75Q8N9X5 138 aa9.36□□□□□ -0.91
UPF1-208ENST00000600012 SPAG8Q99932 426 aaPredicted RBP9.36□□□□□ -0.91
UPF1-208ENST00000600012 VGLL1Q99990 258 aa9.36□□□□□ -0.91
UPF1-208ENST00000600012 NIPSNAP3BQ9BS92 247 aa9.36□□□□□ -0.91
UPF1-208ENST00000600012 NAT8Q9UHE5 227 aa9.36□□□□□ -0.91
UPF1-208ENST00000600012 SERTM2A0A1B0GWG4 89 aa9.35□□□□□ -0.91
UPF1-208ENST00000600012 RBMY1BA6NDE4 496 aaKnown RBP9.35□□□□□ -0.91
UPF1-208ENST00000600012 RBMY1EA6NEQ0 496 aaKnown RBP9.35□□□□□ -0.91
UPF1-208ENST00000600012 OR4C46A6NHA9 309 aa9.35□□□□□ -0.91
UPF1-208ENST00000600012 K7EQM0 130 aa9.35□□□□□ -0.91
UPF1-208ENST00000600012 IGLV2-11P01706 119 aa9.35□□□□□ -0.91
UPF1-208ENST00000600012 CD7P09564 240 aa9.35□□□□□ -0.91
UPF1-208ENST00000600012 RBMY1DP0C7P1 496 aaKnown RBP9.35□□□□□ -0.91
UPF1-208ENST00000600012 GNG4P50150 75 aa9.35□□□□□ -0.91
UPF1-208ENST00000600012 TAS2R60P59551 318 aa9.35□□□□□ -0.91
UPF1-208ENST00000600012 SNRPD3P62318 126 aaKnown RBP9.35□□□□□ -0.91
UPF1-208ENST00000600012 FLI1Q01543 452 aaPredicted RBP9.35□□□□□ -0.91
UPF1-208ENST00000600012 DEFB125Q8N687 156 aa9.35□□□□□ -0.91
UPF1-208ENST00000600012 ARL6IP6Q8N6S5 226 aa9.35□□□□□ -0.91
UPF1-208ENST00000600012 NHLRC2Q8NBF2 726 aa9.35□□□□□ -0.91
UPF1-208ENST00000600012 Q8TAT8 98 aa9.35□□□□□ -0.91
UPF1-208ENST00000600012 TVP23CQ96ET8 276 aa9.35□□□□□ -0.91
UPF1-208ENST00000600012 FMC1Q96HJ9 113 aa9.35□□□□□ -0.91
UPF1-208ENST00000600012 SRD5A3Q9H8P0 318 aa9.35□□□□□ -0.91
UPF1-208ENST00000600012 SDF2L1Q9HCN8 221 aa9.35□□□□□ -0.91
UPF1-208ENST00000600012 PSG8Q9UQ74 426 aa9.35□□□□□ -0.91
UPF1-208ENST00000600012 KLF12Q9Y4X4 402 aa9.35□□□□□ -0.91
UPF1-208ENST00000600012 OR11H12B2RN74 326 aa9.34□□□□□ -0.91
UPF1-208ENST00000600012 C9JCJ5 164 aa9.34□□□□□ -0.91
UPF1-208ENST00000600012 M0R036 132 aa9.34□□□□□ -0.91
UPF1-208ENST00000600012 DEFB131AP59861 70 aa9.34□□□□□ -0.91
UPF1-208ENST00000600012 RPL23P62829 140 aaKnown RBP9.34□□□□□ -0.91
UPF1-208ENST00000600012 ADIRFQ15847 76 aa9.34□□□□□ -0.91
UPF1-208ENST00000600012 TMEM241Q24JQ0 296 aa9.34□□□□□ -0.91
UPF1-208ENST00000600012 WFDC10AQ9H1F0 79 aa9.34□□□□□ -0.91
UPF1-208ENST00000600012 MAP6D1Q9H9H5 199 aa9.34□□□□□ -0.91
UPF1-208ENST00000600012 HYDINQ4G0P3 5121 aa9.33□□□□□ -0.92
UPF1-208ENST00000600012 RBAKDNA6NC62 111 aa9.33□□□□□ -0.92
UPF1-208ENST00000600012 IGLV2-8P01709 118 aa9.33□□□□□ -0.92
UPF1-208ENST00000600012 S100A9P06702 114 aaKnown RBP9.33□□□□□ -0.92
UPF1-208ENST00000600012 HIST1H1AQ02539 215 aaPredicted RBP9.33□□□□□ -0.92
UPF1-208ENST00000600012 GDF5OSQ5U4N7 250 aa9.33□□□□□ -0.92
UPF1-208ENST00000600012 BAGE2Q86Y30 109 aa9.33□□□□□ -0.92
UPF1-208ENST00000600012 SVBPQ8N300 66 aa9.33□□□□□ -0.92
UPF1-208ENST00000600012 OR8A1Q8NGG7 326 aa9.33□□□□□ -0.92
UPF1-208ENST00000600012 OCC1Q8TAD7 63 aa9.33□□□□□ -0.92
UPF1-208ENST00000600012 TRBV6-1A0A0K0K1D8 114 aa9.32□□□□□ -0.92
UPF1-208ENST00000600012 NPIPB6E9PJ23 425 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 101.9 ms