RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 TMED6Q8WW62 240 aa10.21□□□□□ -0.77
SHKBP1-217ENST00000598558 LINC00477Q96M19 166 aa10.21□□□□□ -0.77
SHKBP1-217ENST00000598558 PPP1R14DQ9NXH3 145 aa10.21□□□□□ -0.77
SHKBP1-217ENST00000598558 CELA1Q9UNI1 258 aa10.21□□□□□ -0.77
SHKBP1-217ENST00000598558 CSMD3Q7Z407 3707 aa10.21□□□□□ -0.78
SHKBP1-217ENST00000598558 PRR9Q5T870 116 aa10.2□□□□□ -0.78
SHKBP1-217ENST00000598558 Q8TAT8 98 aa10.2□□□□□ -0.78
SHKBP1-217ENST00000598558 STOML3Q8TAV4 291 aa10.2□□□□□ -0.78
SHKBP1-217ENST00000598558 GOLT1BQ9Y3E0 138 aa10.2□□□□□ -0.78
SHKBP1-217ENST00000598558 YTHDF2Q9Y5A9 579 aaKnown RBP10.2□□□□□ -0.78
SHKBP1-217ENST00000598558 GGTLC3B5MD39 225 aa10.19□□□□□ -0.78
SHKBP1-217ENST00000598558 INSP01308 110 aa10.19□□□□□ -0.78
SHKBP1-217ENST00000598558 NKX2-5P52952 324 aaPredicted RBP10.19□□□□□ -0.78
SHKBP1-217ENST00000598558 ZFAND2AQ8N6M9 145 aa10.19□□□□□ -0.78
SHKBP1-217ENST00000598558 ODF3Q96PU9 254 aa10.19□□□□□ -0.78
SHKBP1-217ENST00000598558 ZNF492Q9P255 531 aa10.19□□□□□ -0.78
SHKBP1-217ENST00000598558 PLAC8L1A1L4L8 177 aa10.18□□□□□ -0.78
SHKBP1-217ENST00000598558 MAP1LC3B2A6NCE7 125 aa10.18□□□□□ -0.78
SHKBP1-217ENST00000598558 SMIM9A6NGZ8 99 aa10.18□□□□□ -0.78
SHKBP1-217ENST00000598558 KLLNB2CW77 178 aa10.18□□□□□ -0.78
SHKBP1-217ENST00000598558 TPT1P13693 172 aaKnown RBP10.18□□□□□ -0.78
SHKBP1-217ENST00000598558 SUMO1P63165 101 aaKnown RBP10.18□□□□□ -0.78
SHKBP1-217ENST00000598558 PMS2P11Q13670 270 aa10.18□□□□□ -0.78
SHKBP1-217ENST00000598558 GOLT1AQ6ZVE7 132 aa10.18□□□□□ -0.78
SHKBP1-217ENST00000598558 FAM213BQ8TBF2 198 aa10.18□□□□□ -0.78
SHKBP1-217ENST00000598558 MBD3L1Q8WWY6 194 aa10.18□□□□□ -0.78
SHKBP1-217ENST00000598558 TVP23CQ96ET8 276 aa10.18□□□□□ -0.78
SHKBP1-217ENST00000598558 MAP1LC3BQ9GZQ8 125 aa10.18□□□□□ -0.78
SHKBP1-217ENST00000598558 TMEM167BQ9NRX6 74 aa10.18□□□□□ -0.78
SHKBP1-217ENST00000598558 RPH3ALQ9UNE2 315 aa10.18□□□□□ -0.78
SHKBP1-217ENST00000598558 TRAV8-1A0A0A6YYK1 113 aa10.17□□□□□ -0.78
SHKBP1-217ENST00000598558 TRAV12-3A0A0B4J271 114 aa10.17□□□□□ -0.78
SHKBP1-217ENST00000598558 RBAKDNA6NC62 111 aa10.17□□□□□ -0.78
SHKBP1-217ENST00000598558 ZNF324O75467 553 aaPredicted RBP10.17□□□□□ -0.78
SHKBP1-217ENST00000598558 SLC25A5P05141 298 aaKnown RBP10.17□□□□□ -0.78
SHKBP1-217ENST00000598558 CRISP2P16562 243 aa10.17□□□□□ -0.78
SHKBP1-217ENST00000598558 TSPOP30536 169 aa10.17□□□□□ -0.78
SHKBP1-217ENST00000598558 LEPP41159 167 aa10.17□□□□□ -0.78
SHKBP1-217ENST00000598558 CSN1S1P47710 185 aa10.17□□□□□ -0.78
SHKBP1-217ENST00000598558 ZNF138P52744 262 aa10.17□□□□□ -0.78
SHKBP1-217ENST00000598558 EMP1P54849 157 aa10.17□□□□□ -0.78
SHKBP1-217ENST00000598558 UBE2G2P60604 165 aa10.17□□□□□ -0.78
SHKBP1-217ENST00000598558 BTN1A1Q13410 526 aa10.17□□□□□ -0.78
SHKBP1-217ENST00000598558 ZFP69Q49AA0 526 aa10.17□□□□□ -0.78
SHKBP1-217ENST00000598558 ZNF767PQ75MW2 155 aa10.17□□□□□ -0.78
SHKBP1-217ENST00000598558 IQCF2Q8IXL9 164 aa10.17□□□□□ -0.78
SHKBP1-217ENST00000598558 C11orf45Q8TAV5 145 aa10.17□□□□□ -0.78
SHKBP1-217ENST00000598558 RXFP4Q8TDU9 374 aa10.17□□□□□ -0.78
SHKBP1-217ENST00000598558 SGK494Q96LW2 274 aa10.17□□□□□ -0.78
SHKBP1-217ENST00000598558 LINC01587Q99440 93 aa10.17□□□□□ -0.78
SHKBP1-217ENST00000598558 TMEM208Q9BTX3 173 aa10.17□□□□□ -0.78
SHKBP1-217ENST00000598558 BOLA1Q9Y3E2 137 aa10.17□□□□□ -0.78
SHKBP1-217ENST00000598558 LOC102723971A0A1B0GUV8 181 aa10.16□□□□□ -0.78
SHKBP1-217ENST00000598558 HBE1P02100 147 aa10.16□□□□□ -0.78
SHKBP1-217ENST00000598558 RNASE4P34096 147 aaKnown RBP10.16□□□□□ -0.78
SHKBP1-217ENST00000598558 EIF5AP63241 154 aaKnown RBP10.16□□□□□ -0.78
SHKBP1-217ENST00000598558 RRN3P1Q2M238 152 aa10.16□□□□□ -0.78
SHKBP1-217ENST00000598558 C12orf74Q32Q52 190 aa10.16□□□□□ -0.78
SHKBP1-217ENST00000598558 TMEM78Q5T7P6 136 aa10.16□□□□□ -0.78
SHKBP1-217ENST00000598558 A0A1B0GV50 99 aa10.15□□□□□ -0.78
SHKBP1-217ENST00000598558 A0A1W2PRE2 83 aa10.15□□□□□ -0.78
SHKBP1-217ENST00000598558 FAM74A7A6NL05 159 aa10.15□□□□□ -0.78
SHKBP1-217ENST00000598558 UMAD1C9J7I0 102 aa10.15□□□□□ -0.78
SHKBP1-217ENST00000598558 IGLV2-11P01706 119 aa10.15□□□□□ -0.78
SHKBP1-217ENST00000598558 TCRAP04437 139 aa10.15□□□□□ -0.78
SHKBP1-217ENST00000598558 HTN1P15515 57 aa10.15□□□□□ -0.78
SHKBP1-217ENST00000598558 CCL20P78556 96 aa10.15□□□□□ -0.78
SHKBP1-217ENST00000598558 SLC51BQ86UW2 128 aa10.15□□□□□ -0.78
SHKBP1-217ENST00000598558 ARL6IP6Q8N6S5 226 aa10.15□□□□□ -0.78
SHKBP1-217ENST00000598558 CMTM2Q8TAZ6 248 aa10.15□□□□□ -0.78
SHKBP1-217ENST00000598558 SFT2D1Q8WV19 159 aa10.15□□□□□ -0.78
SHKBP1-217ENST00000598558 LINC00479Q96M42 142 aa10.15□□□□□ -0.78
SHKBP1-217ENST00000598558 EPDR1Q9UM22 224 aa10.15□□□□□ -0.78
SHKBP1-217ENST00000598558 DYNC2H1Q8NCM8 4307 aaKnown RBP10.14□□□□□ -0.79
SHKBP1-217ENST00000598558 KMT2CQ8NEZ4 4911 aaKnown RBP10.14□□□□□ -0.79
SHKBP1-217ENST00000598558 C7orf71A4D174 169 aa10.14□□□□□ -0.79
SHKBP1-217ENST00000598558 CXorf65A6NEN9 183 aa10.14□□□□□ -0.79
SHKBP1-217ENST00000598558 TAS2R60P59551 318 aa10.14□□□□□ -0.79
SHKBP1-217ENST00000598558 FAM74A1Q5RGS3 127 aa10.14□□□□□ -0.79
SHKBP1-217ENST00000598558 Q6ZTC4 211 aa10.14□□□□□ -0.79
SHKBP1-217ENST00000598558 C5orf17Q8NAS9 161 aa10.14□□□□□ -0.79
SHKBP1-217ENST00000598558 PHLDA1Q8WV24 401 aaPredicted RBP10.14□□□□□ -0.79
SHKBP1-217ENST00000598558 DKK2Q9UBU2 259 aa10.14□□□□□ -0.79
SHKBP1-217ENST00000598558 PLECQ15149 4684 aaKnown RBP10.13□□□□□ -0.79
SHKBP1-217ENST00000598558 H7BYZ3 331 aa10.13□□□□□ -0.79
SHKBP1-217ENST00000598558 GPX1P07203 203 aa10.13□□□□□ -0.79
SHKBP1-217ENST00000598558 NMBP08949 121 aa10.13□□□□□ -0.79
SHKBP1-217ENST00000598558 SULT1A2P50226 295 aa10.13□□□□□ -0.79
SHKBP1-217ENST00000598558 FAM222AQ5U5X8 452 aa10.13□□□□□ -0.79
SHKBP1-217ENST00000598558 CEMP1Q6PRD7 247 aaPredicted RBP10.13□□□□□ -0.79
SHKBP1-217ENST00000598558 CCDC28AQ8IWP9 274 aa10.13□□□□□ -0.79
SHKBP1-217ENST00000598558 TMEM256Q8N2U0 113 aa10.13□□□□□ -0.79
SHKBP1-217ENST00000598558 C20orf144Q9BQM9 153 aa10.13□□□□□ -0.79
SHKBP1-217ENST00000598558 TRAV34A0A0B4J273 112 aa10.12□□□□□ -0.79
SHKBP1-217ENST00000598558 TRBV7-9A0A0J9YWB2 115 aa10.12□□□□□ -0.79
SHKBP1-217ENST00000598558 H2AFB1P0C5Y9 115 aa10.12□□□□□ -0.79
SHKBP1-217ENST00000598558 ATP5G3P48201 142 aa10.12□□□□□ -0.79
SHKBP1-217ENST00000598558 DPPA3Q6W0C5 159 aa10.12□□□□□ -0.79
SHKBP1-217ENST00000598558 RNASE8Q8TDE3 154 aaKnown RBP10.12□□□□□ -0.79
SHKBP1-217ENST00000598558 TP53TG3Q9ULZ0 132 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms