RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 FAM122CQ6P4D5 195 aa10.7□□□□□ -0.7
TRIM28-205ENST00000595028 ZNF493Q6ZR52 646 aa10.7□□□□□ -0.7
TRIM28-205ENST00000595028 C9orf47Q6ZRZ4 202 aa10.7□□□□□ -0.7
TRIM28-205ENST00000595028 FAM19A4Q96LR4 140 aa10.7□□□□□ -0.7
TRIM28-205ENST00000595028 TRAV12-3A0A0B4J271 114 aa10.69□□□□□ -0.7
TRIM28-205ENST00000595028 KLLNB2CW77 178 aa10.69□□□□□ -0.7
TRIM28-205ENST00000595028 SLC25A5P05141 298 aaKnown RBP10.69□□□□□ -0.7
TRIM28-205ENST00000595028 DEFB130BP0DP73 79 aa10.69□□□□□ -0.7
TRIM28-205ENST00000595028 DEFB130AP0DP74 79 aa10.69□□□□□ -0.7
TRIM28-205ENST00000595028 RAB2AP61019 212 aa10.69□□□□□ -0.7
TRIM28-205ENST00000595028 ZNF266Q14584 549 aa10.69□□□□□ -0.7
TRIM28-205ENST00000595028 LINC00477Q96M19 166 aa10.69□□□□□ -0.7
TRIM28-205ENST00000595028 AGPAT4-IT1Q9H0P7 198 aa10.69□□□□□ -0.7
TRIM28-205ENST00000595028 C7orf71A4D174 169 aa10.68□□□□□ -0.7
TRIM28-205ENST00000595028 EIF3GO75821 320 aaKnown RBP eCLIP10.68□□□□□ -0.7
TRIM28-205ENST00000595028 M6PRP20645 277 aa10.68□□□□□ -0.7
TRIM28-205ENST00000595028 ACOT6Q3I5F7 207 aaPredicted RBP10.68□□□□□ -0.7
TRIM28-205ENST00000595028 Q5BKY6 102 aa10.68□□□□□ -0.7
TRIM28-205ENST00000595028 Q9H3A6 140 aa10.68□□□□□ -0.7
TRIM28-205ENST00000595028 TIMM8BQ9Y5J9 83 aaPredicted RBP10.68□□□□□ -0.7
TRIM28-205ENST00000595028 P0DMU3 169 aa10.67□□□□□ -0.7
TRIM28-205ENST00000595028 FAM231AP0DMU4 169 aa10.67□□□□□ -0.7
TRIM28-205ENST00000595028 FAM231CP0DMU5 169 aa10.67□□□□□ -0.7
TRIM28-205ENST00000595028 CRISP2P16562 243 aa10.67□□□□□ -0.7
TRIM28-205ENST00000595028 TMEM78Q5T7P6 136 aa10.67□□□□□ -0.7
TRIM28-205ENST00000595028 TMEM88Q6PEY1 159 aa10.67□□□□□ -0.7
TRIM28-205ENST00000595028 CCDC28AQ8IWP9 274 aa10.67□□□□□ -0.7
TRIM28-205ENST00000595028 LYPD1Q8N2G4 141 aa10.67□□□□□ -0.7
TRIM28-205ENST00000595028 HSD17B11Q8NBQ5 300 aa10.67□□□□□ -0.7
TRIM28-205ENST00000595028 OR2G3Q8NGZ4 309 aa10.67□□□□□ -0.7
TRIM28-205ENST00000595028 VGLL1Q99990 258 aa10.67□□□□□ -0.7
TRIM28-205ENST00000595028 PYGO2Q9BRQ0 406 aa10.67□□□□□ -0.7
TRIM28-205ENST00000595028 NOP10Q9NPE3 64 aaKnown RBP10.67□□□□□ -0.7
TRIM28-205ENST00000595028 MUC4Q99102 2169 aa10.66□□□□□ -0.7
TRIM28-205ENST00000595028 NMBP08949 121 aa10.66□□□□□ -0.7
TRIM28-205ENST00000595028 CSN1S1P47710 185 aa10.66□□□□□ -0.7
TRIM28-205ENST00000595028 RANP62826 216 aaKnown RBP10.66□□□□□ -0.7
TRIM28-205ENST00000595028 BTN1A1Q13410 526 aa10.66□□□□□ -0.7
TRIM28-205ENST00000595028 PQLC2Q6ZP29 291 aa10.66□□□□□ -0.7
TRIM28-205ENST00000595028 ZFAND2AQ8N6M9 145 aa10.66□□□□□ -0.7
TRIM28-205ENST00000595028 PSMG3Q9BT73 122 aaPredicted RBP10.66□□□□□ -0.7
TRIM28-205ENST00000595028 ZNF492Q9P255 531 aa10.66□□□□□ -0.7
TRIM28-205ENST00000595028 DNAH2Q9P225 4427 aa10.66□□□□□ -0.7
TRIM28-205ENST00000595028 FXYD6-FXYD2A0A087WZ82 144 aa10.65□□□□□ -0.7
TRIM28-205ENST00000595028 A0A1W2PPV4 95 aa10.65□□□□□ -0.7
TRIM28-205ENST00000595028 RNF222A6NCQ9 220 aa10.65□□□□□ -0.7
TRIM28-205ENST00000595028 ATP5G1P05496 136 aa10.65□□□□□ -0.7
TRIM28-205ENST00000595028 ATP6V0CP27449 155 aa10.65□□□□□ -0.7
TRIM28-205ENST00000595028 ATP5G3P48201 142 aa10.65□□□□□ -0.7
TRIM28-205ENST00000595028 CD300CQ08708 224 aa10.65□□□□□ -0.7
TRIM28-205ENST00000595028 PRR9Q5T870 116 aa10.65□□□□□ -0.7
TRIM28-205ENST00000595028 LINC00612Q8N6U2 182 aa10.65□□□□□ -0.7
TRIM28-205ENST00000595028 POM121L12Q8N7R1 296 aa10.65□□□□□ -0.7
TRIM28-205ENST00000595028 INO80EQ8NBZ0 244 aaPredicted RBP10.65□□□□□ -0.7
TRIM28-205ENST00000595028 OR10G4Q8NGN3 311 aa10.65□□□□□ -0.7
TRIM28-205ENST00000595028 OR10G9Q8NGN4 311 aa10.65□□□□□ -0.7
TRIM28-205ENST00000595028 OR10G7Q8NGN6 311 aa10.65□□□□□ -0.7
TRIM28-205ENST00000595028 OR2T35Q8NGX2 323 aa10.65□□□□□ -0.7
TRIM28-205ENST00000595028 Q8TAT8 98 aa10.65□□□□□ -0.7
TRIM28-205ENST00000595028 DYNC1H1Q14204 4646 aaKnown RBP10.65□□□□□ -0.71
TRIM28-205ENST00000595028 FAT2Q9NYQ8 4349 aa10.65□□□□□ -0.71
TRIM28-205ENST00000595028 TRBV7-9A0A0J9YWB2 115 aa10.64□□□□□ -0.71
TRIM28-205ENST00000595028 RBAKDNA6NC62 111 aa10.64□□□□□ -0.71
TRIM28-205ENST00000595028 CBY3A6NI87 242 aa10.64□□□□□ -0.71
TRIM28-205ENST00000595028 SNURFLB1AK76 121 aa10.64□□□□□ -0.71
TRIM28-205ENST00000595028 GPX1P07203 203 aa10.64□□□□□ -0.71
TRIM28-205ENST00000595028 RNASE4P34096 147 aaKnown RBP10.64□□□□□ -0.71
TRIM28-205ENST00000595028 CDC34P49427 236 aaPredicted RBP10.64□□□□□ -0.71
TRIM28-205ENST00000595028 ZNF138P52744 262 aa10.64□□□□□ -0.71
TRIM28-205ENST00000595028 LINC00467Q9BRT7 94 aa10.64□□□□□ -0.71
TRIM28-205ENST00000595028 OTORQ9NRC9 128 aa10.64□□□□□ -0.71
TRIM28-205ENST00000595028 TNFSF18Q9UNG2 199 aa10.64□□□□□ -0.71
TRIM28-205ENST00000595028 NACAE9PAV3 2078 aa10.63□□□□□ -0.71
TRIM28-205ENST00000595028 F5H768 121 aa10.63□□□□□ -0.71
TRIM28-205ENST00000595028 G3V3Q6 166 aa10.63□□□□□ -0.71
TRIM28-205ENST00000595028 HMGB3O15347 200 aaKnown RBP10.63□□□□□ -0.71
TRIM28-205ENST00000595028 ZNF324O75467 553 aaPredicted RBP10.63□□□□□ -0.71
TRIM28-205ENST00000595028 EIF4E3Q8N5X7 224 aaKnown RBP10.63□□□□□ -0.71
TRIM28-205ENST00000595028 C15orf53Q8NAA6 179 aa10.63□□□□□ -0.71
TRIM28-205ENST00000595028 ZNF680Q8NEM1 530 aa10.63□□□□□ -0.71
TRIM28-205ENST00000595028 RXFP4Q8TDU9 374 aa10.63□□□□□ -0.71
TRIM28-205ENST00000595028 SH3BGRL3Q9H299 93 aa10.63□□□□□ -0.71
TRIM28-205ENST00000595028 DNAH17Q9UFH2 4485 aa10.62□□□□□ -0.71
TRIM28-205ENST00000595028 DIRC3C9JPN6 131 aa10.62□□□□□ -0.71
TRIM28-205ENST00000595028 STAG3L2P0CL84 134 aa10.62□□□□□ -0.71
TRIM28-205ENST00000595028 STAG3L3P0CL85 134 aa10.62□□□□□ -0.71
TRIM28-205ENST00000595028 ARL14EPLP0DKL9 152 aa10.62□□□□□ -0.71
TRIM28-205ENST00000595028 SERF2P84101 59 aa10.62□□□□□ -0.71
TRIM28-205ENST00000595028 DAZ2Q13117 558 aaKnown RBP10.62□□□□□ -0.71
TRIM28-205ENST00000595028 ANXA2RQ3ZCQ2 193 aa10.62□□□□□ -0.71
TRIM28-205ENST00000595028 UBE2DNLQ8IWF7 75 aa10.62□□□□□ -0.71
TRIM28-205ENST00000595028 C11orf72Q8NBR9 251 aa10.62□□□□□ -0.71
TRIM28-205ENST00000595028 MBP02144 154 aa10.61□□□□□ -0.71
TRIM28-205ENST00000595028 FAM74A1Q5RGS3 127 aa10.61□□□□□ -0.71
TRIM28-205ENST00000595028 RPL7L1Q6DKI1 246 aaKnown RBP10.61□□□□□ -0.71
TRIM28-205ENST00000595028 CMTM2Q8TAZ6 248 aa10.61□□□□□ -0.71
TRIM28-205ENST00000595028 HYLS1Q96M11 299 aa10.61□□□□□ -0.71
TRIM28-205ENST00000595028 BORCS7-ASMTA0A0B4J1R7 106 aa10.6□□□□□ -0.71
TRIM28-205ENST00000595028 GAGE12BA1L429 117 aa10.6□□□□□ -0.71
TRIM28-205ENST00000595028 PGPA6NDG6 321 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms