RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 AKAP14Q86UN6 197 aa8.91□□□□□ -0.98
UPF1-203ENST00000594504 POM121L12Q8N7R1 296 aa8.91□□□□□ -0.98
UPF1-203ENST00000594504 NEU1Q99519 415 aa8.91□□□□□ -0.98
UPF1-203ENST00000594504 GOLT1BQ9Y3E0 138 aa8.91□□□□□ -0.98
UPF1-203ENST00000594504 SMIM9A6NGZ8 99 aa8.9□□□□□ -0.98
UPF1-203ENST00000594504 PFDN1O60925 122 aa8.9□□□□□ -0.98
UPF1-203ENST00000594504 INSP01308 110 aa8.9□□□□□ -0.98
UPF1-203ENST00000594504 C1QBP02746 253 aa8.9□□□□□ -0.98
UPF1-203ENST00000594504 ARL14EPLP0DKL9 152 aa8.9□□□□□ -0.98
UPF1-203ENST00000594504 TSPOP30536 169 aa8.9□□□□□ -0.98
UPF1-203ENST00000594504 CDKN1BP46527 198 aa8.9□□□□□ -0.98
UPF1-203ENST00000594504 RANP62826 216 aaKnown RBP8.9□□□□□ -0.98
UPF1-203ENST00000594504 EIF5AP63241 154 aaKnown RBP8.9□□□□□ -0.98
UPF1-203ENST00000594504 C1orf158Q8N1D5 194 aa8.9□□□□□ -0.98
UPF1-203ENST00000594504 ODF3Q96PU9 254 aa8.9□□□□□ -0.98
UPF1-203ENST00000594504 NDUFAF3Q9BU61 184 aa8.9□□□□□ -0.98
UPF1-203ENST00000594504 ZNF471Q9BX82 626 aaPredicted RBP8.9□□□□□ -0.98
UPF1-203ENST00000594504 Q9H3A6 140 aa8.9□□□□□ -0.98
UPF1-203ENST00000594504 RTL8CO15255 209 aa8.89□□□□□ -0.99
UPF1-203ENST00000594504 CRXO43186 299 aaPredicted RBP8.89□□□□□ -0.99
UPF1-203ENST00000594504 CXorf1O96002 111 aa8.89□□□□□ -0.99
UPF1-203ENST00000594504 SPART-AS1P0CW21 52 aa8.89□□□□□ -0.99
UPF1-203ENST00000594504 P0DMU3 169 aa8.89□□□□□ -0.99
UPF1-203ENST00000594504 FAM231AP0DMU4 169 aa8.89□□□□□ -0.99
UPF1-203ENST00000594504 FAM231CP0DMU5 169 aa8.89□□□□□ -0.99
UPF1-203ENST00000594504 CSN1S1P47710 185 aa8.89□□□□□ -0.99
UPF1-203ENST00000594504 FAM74A1Q5RGS3 127 aa8.89□□□□□ -0.99
UPF1-203ENST00000594504 LINC00336Q6ZUF6 198 aa8.89□□□□□ -0.99
UPF1-203ENST00000594504 TMUB2Q71RG4 321 aa8.89□□□□□ -0.99
UPF1-203ENST00000594504 BAP18Q8IXM2 172 aa8.89□□□□□ -0.99
UPF1-203ENST00000594504 LINC00477Q96M19 166 aa8.89□□□□□ -0.99
UPF1-203ENST00000594504 OTORQ9NRC9 128 aa8.89□□□□□ -0.99
UPF1-203ENST00000594504 IGLV2-18A0A075B6J9 118 aa8.88□□□□□ -0.99
UPF1-203ENST00000594504 IGKV2-40A0A087WW87 121 aaPredicted RBP8.88□□□□□ -0.99
UPF1-203ENST00000594504 CTXND1A0A1B0GTU2 59 aa8.88□□□□□ -0.99
UPF1-203ENST00000594504 PRSS29PA6NIE9 313 aa8.88□□□□□ -0.99
UPF1-203ENST00000594504 IGKV2D-40P01614 121 aaPredicted RBP8.88□□□□□ -0.99
UPF1-203ENST00000594504 SEC11BP0C7V7 166 aa8.88□□□□□ -0.99
UPF1-203ENST00000594504 CT45A10P0DMU9 189 aa8.88□□□□□ -0.99
UPF1-203ENST00000594504 GCHFRP30047 84 aa8.88□□□□□ -0.99
UPF1-203ENST00000594504 LEPP41159 167 aa8.88□□□□□ -0.99
UPF1-203ENST00000594504 FAM222AQ5U5X8 452 aa8.88□□□□□ -0.99
UPF1-203ENST00000594504 C9orf47Q6ZRZ4 202 aa8.88□□□□□ -0.99
UPF1-203ENST00000594504 SUN5Q8TC36 379 aa8.88□□□□□ -0.99
UPF1-203ENST00000594504 RXFP4Q8TDU9 374 aa8.88□□□□□ -0.99
UPF1-203ENST00000594504 HYLS1Q96M11 299 aa8.88□□□□□ -0.99
UPF1-203ENST00000594504 TMEM208Q9BTX3 173 aa8.88□□□□□ -0.99
UPF1-203ENST00000594504 TMEM167BQ9NRX6 74 aa8.88□□□□□ -0.99
UPF1-203ENST00000594504 KIAA1109Q2LD37 5005 aa8.88□□□□□ -0.99
UPF1-203ENST00000594504 HECTD4Q9Y4D8 3996 aa8.87□□□□□ -0.99
UPF1-203ENST00000594504 TRAV12-2A0A075B6T6 113 aa8.87□□□□□ -0.99
UPF1-203ENST00000594504 TMEM189A5PLL7 270 aa8.87□□□□□ -0.99
UPF1-203ENST00000594504 RBAKDNA6NC62 111 aa8.87□□□□□ -0.99
UPF1-203ENST00000594504 HBE1P02100 147 aa8.87□□□□□ -0.99
UPF1-203ENST00000594504 PRM2P04554 102 aa8.87□□□□□ -0.99
UPF1-203ENST00000594504 SLC25A5P05141 298 aaKnown RBP8.87□□□□□ -0.99
UPF1-203ENST00000594504 TPT1P13693 172 aaKnown RBP8.87□□□□□ -0.99
UPF1-203ENST00000594504 HTN3P15516 51 aa8.87□□□□□ -0.99
UPF1-203ENST00000594504 ERCC8Q13216 396 aa8.87□□□□□ -0.99
UPF1-203ENST00000594504 ZNF726P1Q15940 193 aa8.87□□□□□ -0.99
UPF1-203ENST00000594504 LGALSLQ3ZCW2 172 aaPredicted RBP8.87□□□□□ -0.99
UPF1-203ENST00000594504 TMEM78Q5T7P6 136 aa8.87□□□□□ -0.99
UPF1-203ENST00000594504 SSX7Q7RTT5 188 aa8.87□□□□□ -0.99
UPF1-203ENST00000594504 TMEM256Q8N2U0 113 aa8.87□□□□□ -0.99
UPF1-203ENST00000594504 ARL6IP6Q8N6S5 226 aa8.87□□□□□ -0.99
UPF1-203ENST00000594504 CMTM2Q8TAZ6 248 aa8.87□□□□□ -0.99
UPF1-203ENST00000594504 C20orf144Q9BQM9 153 aa8.87□□□□□ -0.99
UPF1-203ENST00000594504 AGPAT4-IT1Q9H0P7 198 aa8.87□□□□□ -0.99
UPF1-203ENST00000594504 DKK2Q9UBU2 259 aa8.87□□□□□ -0.99
UPF1-203ENST00000594504 PGPA6NDG6 321 aa8.86□□□□□ -0.99
UPF1-203ENST00000594504 UMAD1C9J7I0 102 aa8.86□□□□□ -0.99
UPF1-203ENST00000594504 RRN3P1Q2M238 152 aa8.86□□□□□ -0.99
UPF1-203ENST00000594504 STOML3Q8TAV4 291 aa8.86□□□□□ -0.99
UPF1-203ENST00000594504 NIPSNAP3BQ9BS92 247 aa8.86□□□□□ -0.99
UPF1-203ENST00000594504 LOC102723971A0A1B0GUV8 181 aa8.85□□□□□ -0.99
UPF1-203ENST00000594504 A0A1B0GVG6 124 aa8.85□□□□□ -0.99
UPF1-203ENST00000594504 MAP1LC3B2A6NCE7 125 aa8.85□□□□□ -0.99
UPF1-203ENST00000594504 DIRC3C9JPN6 131 aa8.85□□□□□ -0.99
UPF1-203ENST00000594504 ZNF138P52744 262 aa8.85□□□□□ -0.99
UPF1-203ENST00000594504 GFI1BQ5VTD9 330 aa8.85□□□□□ -0.99
UPF1-203ENST00000594504 UBE2DNLQ8IWF7 75 aa8.85□□□□□ -0.99
UPF1-203ENST00000594504 IQCF2Q8IXL9 164 aa8.85□□□□□ -0.99
UPF1-203ENST00000594504 FAM19A4Q96LR4 140 aa8.85□□□□□ -0.99
UPF1-203ENST00000594504 VGLL1Q99990 258 aa8.85□□□□□ -0.99
UPF1-203ENST00000594504 MAP1LC3BQ9GZQ8 125 aa8.85□□□□□ -0.99
UPF1-203ENST00000594504 ZNF492Q9P255 531 aa8.85□□□□□ -0.99
UPF1-203ENST00000594504 YTHDF2Q9Y5A9 579 aaKnown RBP8.85□□□□□ -0.99
UPF1-203ENST00000594504 TRBV7-9A0A0J9YWB2 115 aa8.84□□□□□ -0.99
UPF1-203ENST00000594504 KLLNB2CW77 178 aa8.84□□□□□ -0.99
UPF1-203ENST00000594504 H7BYZ3 331 aa8.84□□□□□ -0.99
UPF1-203ENST00000594504 NMBP08949 121 aa8.84□□□□□ -0.99
UPF1-203ENST00000594504 CRISP2P16562 243 aa8.84□□□□□ -0.99
UPF1-203ENST00000594504 TAS2R60P59551 318 aa8.84□□□□□ -0.99
UPF1-203ENST00000594504 CD300CQ08708 224 aa8.84□□□□□ -0.99
UPF1-203ENST00000594504 KIR3DS1Q14943 382 aa8.84□□□□□ -0.99
UPF1-203ENST00000594504 LGALS9BQ3B8N2 356 aa8.84□□□□□ -0.99
UPF1-203ENST00000594504 ZFP69Q49AA0 526 aa8.84□□□□□ -0.99
UPF1-203ENST00000594504 EIF5AL1Q6IS14 154 aaKnown RBP8.84□□□□□ -0.99
UPF1-203ENST00000594504 DPPA3Q6W0C5 159 aa8.84□□□□□ -0.99
UPF1-203ENST00000594504 C5orf17Q8NAS9 161 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms