RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 C5orf56Q8N8D9 126 aa7.79□□□□□ -1.16
LIG3-216ENST00000593099 ST20Q9HBF5 79 aa7.79□□□□□ -1.16
LIG3-216ENST00000593099 TRGV2A0A075B6R0 118 aa7.78□□□□□ -1.16
LIG3-216ENST00000593099 TRAV21A0A0B4J279 112 aa7.78□□□□□ -1.16
LIG3-216ENST00000593099 SCO2A0A1W2PP80 73 aa7.78□□□□□ -1.16
LIG3-216ENST00000593099 GAGE12HA6NDE8 117 aa7.78□□□□□ -1.16
LIG3-216ENST00000593099 CCL24O00175 119 aa7.78□□□□□ -1.16
LIG3-216ENST00000593099 LGALS1P09382 135 aaKnown RBP7.78□□□□□ -1.16
LIG3-216ENST00000593099 RPL35AP18077 110 aaKnown RBP7.78□□□□□ -1.16
LIG3-216ENST00000593099 PYY3Q5JQD4 70 aa7.78□□□□□ -1.16
LIG3-216ENST00000593099 FAM74A4Q5TZK3 123 aa7.78□□□□□ -1.16
LIG3-216ENST00000593099 WFDC12Q8WWY7 111 aa7.78□□□□□ -1.16
LIG3-216ENST00000593099 NRN1Q9NPD7 142 aa7.78□□□□□ -1.16
LIG3-216ENST00000593099 DNAJC9-AS1A6NH13 148 aa7.78□□□□□ -1.16
LIG3-216ENST00000593099 NPIPB6E9PJ23 425 aa7.78□□□□□ -1.16
LIG3-216ENST00000593099 MRPL27Q9P0M9 148 aaKnown RBP7.78□□□□□ -1.16
LIG3-216ENST00000593099 PSG8Q9UQ74 426 aa7.78□□□□□ -1.16
LIG3-216ENST00000593099 SNAI2O43623 268 aa7.78□□□□□ -1.16
LIG3-216ENST00000593099 ACTL10Q5JWF8 245 aa7.78□□□□□ -1.16
LIG3-216ENST00000593099 PGLYRP4Q96LB8 373 aa7.78□□□□□ -1.16
LIG3-216ENST00000593099 SHANK2-AS3Q9BTD1 123 aa7.78□□□□□ -1.16
LIG3-216ENST00000593099 CARHSP1Q9Y2V2 147 aaKnown RBP7.78□□□□□ -1.16
LIG3-216ENST00000593099 IGLC7A0M8Q6 106 aa7.78□□□□□ -1.16
LIG3-216ENST00000593099 CGB3P0DN86 165 aa7.78□□□□□ -1.16
LIG3-216ENST00000593099 CGB7P0DN87 165 aa7.78□□□□□ -1.16
LIG3-216ENST00000593099 DEFB131AP59861 70 aa7.78□□□□□ -1.16
LIG3-216ENST00000593099 ZNF295-AS1Q8N0V1 137 aa7.78□□□□□ -1.16
LIG3-216ENST00000593099 ST6GALNAC6Q969X2 333 aa7.78□□□□□ -1.16
LIG3-216ENST00000593099 KLF12Q9Y4X4 402 aa7.78□□□□□ -1.16
LIG3-216ENST00000593099 A6NDX4 124 aa7.77□□□□□ -1.17
LIG3-216ENST00000593099 VPREB1P12018 145 aa7.77□□□□□ -1.17
LIG3-216ENST00000593099 ZNF56Q15929 161 aa7.77□□□□□ -1.17
LIG3-216ENST00000593099 SAMD5Q5TGI4 173 aa7.77□□□□□ -1.17
LIG3-216ENST00000593099 TMEM126AQ9H061 195 aa7.77□□□□□ -1.17
LIG3-216ENST00000593099 LINC00574Q9H8X3 128 aa7.77□□□□□ -1.17
LIG3-216ENST00000593099 DOCK11Q5JSL3 2073 aa7.77□□□□□ -1.17
LIG3-216ENST00000593099 NCKAP5O14513 1909 aa7.77□□□□□ -1.17
LIG3-216ENST00000593099 MUC21Q5SSG8 566 aa7.77□□□□□ -1.17
LIG3-216ENST00000593099 SPATA31B1PQ5VZV4 182 aa7.77□□□□□ -1.17
LIG3-216ENST00000593099 SPANXDQ9BXN6 97 aa7.77□□□□□ -1.17
LIG3-216ENST00000593099 DOPEY1Q5JWR5 2465 aa7.77□□□□□ -1.17
LIG3-216ENST00000593099 SIVA1O15304 175 aa7.77□□□□□ -1.17
LIG3-216ENST00000593099 CD7P09564 240 aa7.77□□□□□ -1.17
LIG3-216ENST00000593099 TRBV7-9A0A0J9YWB2 115 aa7.76□□□□□ -1.17
LIG3-216ENST00000593099 M0R381 172 aa7.76□□□□□ -1.17
LIG3-216ENST00000593099 TMEM101Q96IK0 257 aa7.76□□□□□ -1.17
LIG3-216ENST00000593099 KIAA1549Q9HCM3 1950 aa7.76□□□□□ -1.17
LIG3-216ENST00000593099 ABCA12Q86UK0 2595 aa7.76□□□□□ -1.17
LIG3-216ENST00000593099 ODF3BA8MYP8 253 aa7.76□□□□□ -1.17
LIG3-216ENST00000593099 ZNF502Q8TBZ5 544 aa7.76□□□□□ -1.17
LIG3-216ENST00000593099 SNHG12Q9BXW3 62 aa7.76□□□□□ -1.17
LIG3-216ENST00000593099 VSIRQ9H7M9 311 aa7.76□□□□□ -1.17
LIG3-216ENST00000593099 U3KQE9 123 aa7.76□□□□□ -1.17
LIG3-216ENST00000593099 TRGV11A0A075B6L2 103 aa7.76□□□□□ -1.17
LIG3-216ENST00000593099 IGHG2P01859 326 aa7.76□□□□□ -1.17
LIG3-216ENST00000593099 CKS2P33552 79 aa7.76□□□□□ -1.17
LIG3-216ENST00000593099 C8orf86Q6ZUL3 223 aa7.76□□□□□ -1.17
LIG3-216ENST00000593099 CLUHP3Q96NS8 147 aa7.76□□□□□ -1.17
LIG3-216ENST00000593099 WNK1Q9H4A3 2382 aa7.76□□□□□ -1.17
LIG3-216ENST00000593099 H7C1H1 209 aa7.76□□□□□ -1.17
LIG3-216ENST00000593099 LYPD1Q8N2G4 141 aa7.76□□□□□ -1.17
LIG3-216ENST00000593099 RPP25LQ8N5L8 163 aaKnown RBP7.76□□□□□ -1.17
LIG3-216ENST00000593099 MYOZ3Q8TDC0 251 aa7.76□□□□□ -1.17
LIG3-216ENST00000593099 ZNF479Q96JC4 524 aa7.76□□□□□ -1.17
LIG3-216ENST00000593099 LINC00477Q96M19 166 aa7.76□□□□□ -1.17
LIG3-216ENST00000593099 PTPRBP23467 1997 aa7.75□□□□□ -1.17
LIG3-216ENST00000593099 TRBV20-1A0A075B6N2 111 aa7.75□□□□□ -1.17
LIG3-216ENST00000593099 HLA-DQA1P01909 254 aa7.75□□□□□ -1.17
LIG3-216ENST00000593099 LYL1P12980 280 aa7.75□□□□□ -1.17
LIG3-216ENST00000593099 HOXD3P31249 432 aaPredicted RBP7.75□□□□□ -1.17
LIG3-216ENST00000593099 MRPL23Q16540 153 aaKnown RBP7.75□□□□□ -1.17
LIG3-216ENST00000593099 EXOC3-AS1Q8N2X6 119 aa7.75□□□□□ -1.17
LIG3-216ENST00000593099 A0A1W2PPR1 153 aa7.75□□□□□ -1.17
LIG3-216ENST00000593099 A8MWP6 167 aa7.75□□□□□ -1.17
LIG3-216ENST00000593099 DNAL4O96015 105 aa7.75□□□□□ -1.17
LIG3-216ENST00000593099 CCL20P78556 96 aa7.75□□□□□ -1.17
LIG3-216ENST00000593099 PSG3Q16557 428 aa7.75□□□□□ -1.17
LIG3-216ENST00000593099 SFTA2Q6UW10 78 aa7.75□□□□□ -1.17
LIG3-216ENST00000593099 TCF23Q7RTU1 214 aa7.75□□□□□ -1.17
LIG3-216ENST00000593099 HIST1H2BLQ99880 126 aa7.75□□□□□ -1.17
LIG3-216ENST00000593099 MRPL18Q9H0U6 180 aaKnown RBP7.75□□□□□ -1.17
LIG3-216ENST00000593099 RFNGQ9Y644 331 aa7.75□□□□□ -1.17
LIG3-216ENST00000593099 GRIFINA4D1Z8 144 aa7.75□□□□□ -1.17
LIG3-216ENST00000593099 ZNF138P52744 262 aa7.75□□□□□ -1.17
LIG3-216ENST00000593099 Q6YL49 198 aa7.75□□□□□ -1.17
LIG3-216ENST00000593099 ADAMTSL5Q6ZMM2 481 aa7.75□□□□□ -1.17
LIG3-216ENST00000593099 RITA1Q96K30 269 aa7.75□□□□□ -1.17
LIG3-216ENST00000593099 UBE2L6O14933 153 aa7.75□□□□□ -1.17
LIG3-216ENST00000593099 ZNF324O75467 553 aaPredicted RBP7.75□□□□□ -1.17
LIG3-216ENST00000593099 PAX9P55771 341 aa7.75□□□□□ -1.17
LIG3-216ENST00000593099 ODF3L1Q8IXM7 274 aa7.75□□□□□ -1.17
LIG3-216ENST00000593099 UBE2E2Q96LR5 201 aa7.75□□□□□ -1.17
LIG3-216ENST00000593099 TMEM89A2RUT3 159 aa7.74□□□□□ -1.17
LIG3-216ENST00000593099 NDUFA3O95167 84 aa7.74□□□□□ -1.17
LIG3-216ENST00000593099 SRP19P09132 144 aaKnown RBP7.74□□□□□ -1.17
LIG3-216ENST00000593099 IGLC1P0CG04 106 aa7.74□□□□□ -1.17
LIG3-216ENST00000593099 PDE6HQ13956 83 aa7.74□□□□□ -1.17
LIG3-216ENST00000593099 BRK1Q8WUW1 75 aa7.74□□□□□ -1.17
LIG3-216ENST00000593099 NHP2Q9NX24 153 aaKnown RBP7.74□□□□□ -1.17
LIG3-216ENST00000593099 IGKV2-40A0A087WW87 121 aaPredicted RBP7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms