RNA–Protein interactions for RNA: ENST00000593093.5

CIRBP-242, Transcript of cold inducible RNA binding protein, human

TSL 2

Gene CIRBP, Length 3,528 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIRBP-242	ENST00000593093	TGFA	P01135	160 aa		11.28	□□□□□ -0.6
CIRBP-242	ENST00000593093	HLA-DMB	P28068	263 aa		11.28	□□□□□ -0.6
CIRBP-242	ENST00000593093	PPP1R27	Q86WC6	154 aa		11.28	□□□□□ -0.6
CIRBP-242	ENST00000593093	OR4X2	Q8NGF9	303 aa		11.28	□□□□□ -0.6
CIRBP-242	ENST00000593093	HIST1H4G	Q99525	98 aa		11.28	□□□□□ -0.6
CIRBP-242	ENST00000593093	SPAG8	Q99932	426 aa	Predicted RBP	11.28	□□□□□ -0.6
CIRBP-242	ENST00000593093	DKK4	Q9UBT3	224 aa		11.28	□□□□□ -0.6
CIRBP-242	ENST00000593093	CSMD1	Q96PZ7	3565 aa		11.28	□□□□□ -0.6
CIRBP-242	ENST00000593093	TRBV7-9	A0A0J9YWB2	115 aa		11.27	□□□□□ -0.6
CIRBP-242	ENST00000593093	FAM104B	Q5XKR9	115 aa		11.27	□□□□□ -0.6
CIRBP-242	ENST00000593093	MRPL16	Q9NX20	251 aa	Known RBP	11.27	□□□□□ -0.6
CIRBP-242	ENST00000593093	OR9G4	Q8NGQ1	327 aa		11.27	□□□□□ -0.61
CIRBP-242	ENST00000593093	C20orf78	Q9BR46	151 aa		11.27	□□□□□ -0.61
CIRBP-242	ENST00000593093	RELN	P78509	3460 aa		11.27	□□□□□ -0.61
CIRBP-242	ENST00000593093	NCBP2L	A6PVI3	153 aa	Known RBP	11.27	□□□□□ -0.61
CIRBP-242	ENST00000593093	IGLV2-23	P01705	113 aa		11.27	□□□□□ -0.61
CIRBP-242	ENST00000593093	CHAC1	Q9BUX1	264 aa		11.27	□□□□□ -0.61
CIRBP-242	ENST00000593093		A0A1B0GWB2	263 aa		11.26	□□□□□ -0.61
CIRBP-242	ENST00000593093	FGF6	P10767	208 aa		11.26	□□□□□ -0.61
CIRBP-242	ENST00000593093	ONECUT1	Q9UBC0	465 aa		11.26	□□□□□ -0.61
CIRBP-242	ENST00000593093	TRBV19	A0A075B6N1	114 aa		11.26	□□□□□ -0.61
CIRBP-242	ENST00000593093		A0A096LNJ9	63 aa		11.26	□□□□□ -0.61
CIRBP-242	ENST00000593093	RNF125	Q96EQ8	232 aa		11.26	□□□□□ -0.61
CIRBP-242	ENST00000593093	MAP1LC3A	Q9H492	121 aa		11.26	□□□□□ -0.61
CIRBP-242	ENST00000593093	SIGLEC9	Q9Y336	463 aa		11.26	□□□□□ -0.61
CIRBP-242	ENST00000593093	NOTCH3	Q9UM47	2321 aa		11.26	□□□□□ -0.61
CIRBP-242	ENST00000593093	TRAV40	A0A0B4J280	105 aa		11.26	□□□□□ -0.61
CIRBP-242	ENST00000593093	NPIPB6	E9PJ23	425 aa		11.26	□□□□□ -0.61
CIRBP-242	ENST00000593093	SPRY2	O43597	315 aa		11.26	□□□□□ -0.61
CIRBP-242	ENST00000593093	IGLV2-11	P01706	119 aa		11.26	□□□□□ -0.61
CIRBP-242	ENST00000593093	AGRN	O00468	2067 aa		11.25	□□□□□ -0.61
CIRBP-242	ENST00000593093	ODF1	Q14990	250 aa		11.25	□□□□□ -0.61
CIRBP-242	ENST00000593093	C5orf64	Q2M2E5	130 aa		11.25	□□□□□ -0.61
CIRBP-242	ENST00000593093	SEM1	Q6ZVN7	128 aa		11.25	□□□□□ -0.61
CIRBP-242	ENST00000593093	ZNF785	A8K8V0	405 aa		11.25	□□□□□ -0.61
CIRBP-242	ENST00000593093	LGALS9B	Q3B8N2	356 aa		11.25	□□□□□ -0.61
CIRBP-242	ENST00000593093	LGALS9C	Q6DKI2	356 aa		11.25	□□□□□ -0.61
CIRBP-242	ENST00000593093	PIP4P2	Q8N4L2	257 aa		11.25	□□□□□ -0.61
CIRBP-242	ENST00000593093	SYT8	Q8NBV8	401 aa		11.25	□□□□□ -0.61
CIRBP-242	ENST00000593093	LOC107984156	A0A0G2JMH3	177 aa		11.24	□□□□□ -0.61
CIRBP-242	ENST00000593093	C17orf100	A8MU93	164 aa		11.24	□□□□□ -0.61
CIRBP-242	ENST00000593093	IGKV1-17	P01599	117 aa		11.24	□□□□□ -0.61
CIRBP-242	ENST00000593093	IGHG3	P01860	377 aa		11.24	□□□□□ -0.61
CIRBP-242	ENST00000593093	ID1	P41134	155 aa		11.24	□□□□□ -0.61
CIRBP-242	ENST00000593093	ARL17A	Q8IVW1	177 aa		11.24	□□□□□ -0.61
CIRBP-242	ENST00000593093	PRSS33	Q8NF86	280 aa		11.24	□□□□□ -0.61
CIRBP-242	ENST00000593093	TMEM158	Q8WZ71	300 aa		11.24	□□□□□ -0.61
CIRBP-242	ENST00000593093	TRAV26-2	A0A0B4J265	109 aa		11.24	□□□□□ -0.61
CIRBP-242	ENST00000593093	ERCC8	Q13216	396 aa		11.23	□□□□□ -0.61
CIRBP-242	ENST00000593093	CTSZ	Q9UBR2	303 aa		11.23	□□□□□ -0.61
CIRBP-242	ENST00000593093	TMEM8B	A6NDV4	472 aa		11.23	□□□□□ -0.61
CIRBP-242	ENST00000593093	EGR2	P11161	476 aa	Predicted RBP	11.23	□□□□□ -0.61
CIRBP-242	ENST00000593093	BSPH1	Q075Z2	132 aa		11.23	□□□□□ -0.61
CIRBP-242	ENST00000593093	IGHV1-8	P0DP01	117 aa		11.23	□□□□□ -0.61
CIRBP-242	ENST00000593093	VGLL1	Q99990	258 aa		11.23	□□□□□ -0.61
CIRBP-242	ENST00000593093	ANKHD1	Q8IWZ3	2542 aa	Known RBP	11.23	□□□□□ -0.61
CIRBP-242	ENST00000593093	IGKC	P01834	107 aa		11.22	□□□□□ -0.61
CIRBP-242	ENST00000593093	MT-ATP8	P03928	68 aa		11.22	□□□□□ -0.61
CIRBP-242	ENST00000593093	TCTEX1D4	Q5JR98	221 aa		11.22	□□□□□ -0.61
CIRBP-242	ENST00000593093	ZNF418	Q8TF45	676 aa	Predicted RBP	11.22	□□□□□ -0.61
CIRBP-242	ENST00000593093	PGPEP1	Q9NXJ5	209 aa		11.22	□□□□□ -0.61
CIRBP-242	ENST00000593093	SIGLEC15	Q6ZMC9	328 aa		11.22	□□□□□ -0.61
CIRBP-242	ENST00000593093	IGLV3-9	A0A075B6K5	115 aa		11.22	□□□□□ -0.61
CIRBP-242	ENST00000593093	TRBV25-1	A0A075B6N4	114 aa		11.22	□□□□□ -0.61
CIRBP-242	ENST00000593093	ABHD17A	Q96GS6	310 aa		11.22	□□□□□ -0.61
CIRBP-242	ENST00000593093	ZZEF1	O43149	2961 aa		11.21	□□□□□ -0.61
CIRBP-242	ENST00000593093	CYSLTR1	Q9Y271	337 aa		11.21	□□□□□ -0.61
CIRBP-242	ENST00000593093	FAM90A27P	A6NNH2	459 aa		11.21	□□□□□ -0.62
CIRBP-242	ENST00000593093	GAGE5	Q13069	117 aa		11.21	□□□□□ -0.62
CIRBP-242	ENST00000593093	GAGE6	Q13070	117 aa		11.21	□□□□□ -0.62
CIRBP-242	ENST00000593093	MYOZ3	Q8TDC0	251 aa		11.21	□□□□□ -0.62
CIRBP-242	ENST00000593093	SHANK2-AS3	Q9BTD1	123 aa		11.21	□□□□□ -0.62
CIRBP-242	ENST00000593093	PTPRQ	Q9UMZ3	2332 aa		11.21	□□□□□ -0.62
CIRBP-242	ENST00000593093	IGHV1-3	A0A0C4DH29	117 aa		11.21	□□□□□ -0.62
CIRBP-242	ENST00000593093	FCN3	O75636	299 aa		11.21	□□□□□ -0.62
CIRBP-242	ENST00000593093	LY6H	O94772	140 aa		11.21	□□□□□ -0.62
CIRBP-242	ENST00000593093	GATA4	P43694	442 aa		11.21	□□□□□ -0.62
CIRBP-242	ENST00000593093	EFNA4	P52798	201 aa		11.21	□□□□□ -0.62
CIRBP-242	ENST00000593093	ADIPOQ	Q15848	244 aa		11.21	□□□□□ -0.62
CIRBP-242	ENST00000593093	MRPL35	Q9NZE8	188 aa	Known RBP	11.21	□□□□□ -0.62
CIRBP-242	ENST00000593093	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	11.2	□□□□□ -0.62	9e-15	■■■■□ 22
CIRBP-242	ENST00000593093	TRBV20-1	A0A075B6N2	111 aa		11.2	□□□□□ -0.62
CIRBP-242	ENST00000593093	LOX	P28300	417 aa	Predicted RBP	11.2	□□□□□ -0.62
CIRBP-242	ENST00000593093	MAP1A	P78559	2803 aa	Predicted RBP	11.2	□□□□□ -0.62
CIRBP-242	ENST00000593093	TMEM178B	H3BS89	294 aa		11.2	□□□□□ -0.62
CIRBP-242	ENST00000593093	TIMM23	O14925	209 aa		11.2	□□□□□ -0.62
CIRBP-242	ENST00000593093	C8orf86	Q6ZUL3	223 aa		11.2	□□□□□ -0.62
CIRBP-242	ENST00000593093	C3orf56	Q8N813	242 aa		11.2	□□□□□ -0.62
CIRBP-242	ENST00000593093		H3BVH4	76 aa		11.19	□□□□□ -0.62
CIRBP-242	ENST00000593093	TNFRSF6B	O95407	300 aa		11.19	□□□□□ -0.62
CIRBP-242	ENST00000593093	ZNF80	P51504	273 aa	Predicted RBP	11.19	□□□□□ -0.62
CIRBP-242	ENST00000593093	SCGB1D4	Q6XE38	83 aa		11.19	□□□□□ -0.62
CIRBP-242	ENST00000593093	RNF182	Q8N6D2	247 aa		11.19	□□□□□ -0.62
CIRBP-242	ENST00000593093	ZNF491	Q8N8L2	437 aa		11.19	□□□□□ -0.62
CIRBP-242	ENST00000593093	COL12A1	Q99715	3063 aa		11.19	□□□□□ -0.62
CIRBP-242	ENST00000593093	APOM	O95445	188 aa		11.19	□□□□□ -0.62
CIRBP-242	ENST00000593093	SPANXB1	Q9NS25	103 aa	Predicted RBP	11.19	□□□□□ -0.62
CIRBP-242	ENST00000593093	SPG11	Q96JI7	2443 aa		11.19	□□□□□ -0.62
CIRBP-242	ENST00000593093	IGKV3-7	A0A075B6H7	116 aa		11.19	□□□□□ -0.62
CIRBP-242	ENST00000593093	DPM2	O94777	84 aa		11.19	□□□□□ -0.62

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