RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 IGKV2D-40P01614 121 aaPredicted RBP8.55□□□□□ -1.04
LIG3-213ENST00000590630 ERCC8Q13216 396 aa8.55□□□□□ -1.04
LIG3-213ENST00000590630 TMEM78Q5T7P6 136 aa8.55□□□□□ -1.04
LIG3-213ENST00000590630 CEMP1Q6PRD7 247 aaPredicted RBP8.55□□□□□ -1.04
LIG3-213ENST00000590630 PHLDA1Q8WV24 401 aaPredicted RBP8.55□□□□□ -1.04
LIG3-213ENST00000590630 AGPAT4-IT1Q9H0P7 198 aa8.55□□□□□ -1.04
LIG3-213ENST00000590630 KLK5Q9Y337 293 aaPredicted RBP8.55□□□□□ -1.04
LIG3-213ENST00000590630 KANTRA0A1W2PQU2 76 aa8.54□□□□□ -1.04
LIG3-213ENST00000590630 C11orf94C9JXX5 98 aa8.54□□□□□ -1.04
LIG3-213ENST00000590630 H7BYZ3 331 aa8.54□□□□□ -1.04
LIG3-213ENST00000590630 SLC25A5P05141 298 aaKnown RBP8.54□□□□□ -1.04
LIG3-213ENST00000590630 NMBP08949 121 aa8.54□□□□□ -1.04
LIG3-213ENST00000590630 SPART-AS1P0CW21 52 aa8.54□□□□□ -1.04
LIG3-213ENST00000590630 GCHFRP30047 84 aa8.54□□□□□ -1.04
LIG3-213ENST00000590630 EMP1P54849 157 aa8.54□□□□□ -1.04
LIG3-213ENST00000590630 TAS2R60P59551 318 aa8.54□□□□□ -1.04
LIG3-213ENST00000590630 GFI1BQ5VTD9 330 aa8.54□□□□□ -1.04
LIG3-213ENST00000590630 ARL6IP6Q8N6S5 226 aa8.54□□□□□ -1.04
LIG3-213ENST00000590630 CMTM2Q8TAZ6 248 aa8.54□□□□□ -1.04
LIG3-213ENST00000590630 SUN5Q8TC36 379 aa8.54□□□□□ -1.04
LIG3-213ENST00000590630 FAM19A4Q96LR4 140 aa8.54□□□□□ -1.04
LIG3-213ENST00000590630 LINC01587Q99440 93 aa8.54□□□□□ -1.04
LIG3-213ENST00000590630 VGLL1Q99990 258 aa8.54□□□□□ -1.04
LIG3-213ENST00000590630 TMEM167BQ9NRX6 74 aa8.54□□□□□ -1.04
LIG3-213ENST00000590630 CELA1Q9UNI1 258 aa8.54□□□□□ -1.04
LIG3-213ENST00000590630 TRBV7-9A0A0J9YWB2 115 aa8.53□□□□□ -1.04
LIG3-213ENST00000590630 CTXND1A0A1B0GTU2 59 aa8.53□□□□□ -1.04
LIG3-213ENST00000590630 PGPA6NDG6 321 aa8.53□□□□□ -1.04
LIG3-213ENST00000590630 ZNF705GA8MUZ8 300 aaPredicted RBP8.53□□□□□ -1.04
LIG3-213ENST00000590630 KLLNB2CW77 178 aa8.53□□□□□ -1.04
LIG3-213ENST00000590630 DIRC3C9JPN6 131 aa8.53□□□□□ -1.04
LIG3-213ENST00000590630 CRISP2P16562 243 aa8.53□□□□□ -1.04
LIG3-213ENST00000590630 EIF5AP63241 154 aaKnown RBP8.53□□□□□ -1.04
LIG3-213ENST00000590630 KIR3DS1Q14943 382 aa8.53□□□□□ -1.04
LIG3-213ENST00000590630 HYLS1Q96M11 299 aa8.53□□□□□ -1.04
LIG3-213ENST00000590630 ZNF471Q9BX82 626 aaPredicted RBP8.53□□□□□ -1.04
LIG3-213ENST00000590630 ZNF492Q9P255 531 aa8.53□□□□□ -1.04
LIG3-213ENST00000590630 YTHDF2Q9Y5A9 579 aaKnown RBP8.53□□□□□ -1.04
LIG3-213ENST00000590630 C7orf71A4D174 169 aa8.52□□□□□ -1.05
LIG3-213ENST00000590630 J3KRW8 73 aa8.52□□□□□ -1.05
LIG3-213ENST00000590630 SEC11BP0C7V7 166 aa8.52□□□□□ -1.05
LIG3-213ENST00000590630 ZNF138P52744 262 aa8.52□□□□□ -1.05
LIG3-213ENST00000590630 ZNF726P1Q15940 193 aa8.52□□□□□ -1.05
LIG3-213ENST00000590630 FAM222AQ5U5X8 452 aa8.52□□□□□ -1.05
LIG3-213ENST00000590630 Q6ZTC4 211 aa8.52□□□□□ -1.05
LIG3-213ENST00000590630 TMUB2Q71RG4 321 aa8.52□□□□□ -1.05
LIG3-213ENST00000590630 SSX7Q7RTT5 188 aa8.52□□□□□ -1.05
LIG3-213ENST00000590630 TMED6Q8WW62 240 aa8.52□□□□□ -1.05
LIG3-213ENST00000590630 C16orf74Q96GX8 76 aa8.52□□□□□ -1.05
LIG3-213ENST00000590630 NIPSNAP3BQ9BS92 247 aa8.52□□□□□ -1.05
LIG3-213ENST00000590630 DKK2Q9UBU2 259 aa8.52□□□□□ -1.05
LIG3-213ENST00000590630 DYNC2H1Q8NCM8 4307 aaKnown RBP8.52□□□□□ -1.05
LIG3-213ENST00000590630 TRAV10A0A0B4J240 114 aa8.51□□□□□ -1.05
LIG3-213ENST00000590630 TRAV12-3A0A0B4J271 114 aa8.51□□□□□ -1.05
LIG3-213ENST00000590630 UMAD1C9J7I0 102 aa8.51□□□□□ -1.05
LIG3-213ENST00000590630 C1QBP02746 253 aa8.51□□□□□ -1.05
LIG3-213ENST00000590630 GPX1P07203 203 aa8.51□□□□□ -1.05
LIG3-213ENST00000590630 HTN1P15515 57 aa8.51□□□□□ -1.05
LIG3-213ENST00000590630 IFITM2Q01629 132 aa8.51□□□□□ -1.05
LIG3-213ENST00000590630 CD300CQ08708 224 aa8.51□□□□□ -1.05
LIG3-213ENST00000590630 C12orf74Q32Q52 190 aa8.51□□□□□ -1.05
LIG3-213ENST00000590630 ZNF493Q6ZR52 646 aa8.51□□□□□ -1.05
LIG3-213ENST00000590630 SLC7A5P1Q8MH63 180 aa8.51□□□□□ -1.05
LIG3-213ENST00000590630 ZFAND2AQ8N6M9 145 aa8.51□□□□□ -1.05
LIG3-213ENST00000590630 C5orf17Q8NAS9 161 aa8.51□□□□□ -1.05
LIG3-213ENST00000590630 TMEM263Q8WUH6 116 aaKnown RBP8.51□□□□□ -1.05
LIG3-213ENST00000590630 PYGO2Q9BRQ0 406 aa8.51□□□□□ -1.05
LIG3-213ENST00000590630 LENEPQ9Y5L5 61 aa8.51□□□□□ -1.05
LIG3-213ENST00000590630 LCE6AA0A183 80 aa8.5□□□□□ -1.05
LIG3-213ENST00000590630 SERTM2A0A1B0GWG4 89 aa8.5□□□□□ -1.05
LIG3-213ENST00000590630 A0A1W2PRE2 83 aa8.5□□□□□ -1.05
LIG3-213ENST00000590630 LYRM9A8MSI8 78 aa8.5□□□□□ -1.05
LIG3-213ENST00000590630 PRM2P04554 102 aa8.5□□□□□ -1.05
LIG3-213ENST00000590630 TPT1P13693 172 aaKnown RBP8.5□□□□□ -1.05
LIG3-213ENST00000590630 AZU1P20160 251 aa8.5□□□□□ -1.05
LIG3-213ENST00000590630 CCDC28AQ8IWP9 274 aa8.5□□□□□ -1.05
LIG3-213ENST00000590630 IQCF2Q8IXL9 164 aa8.5□□□□□ -1.05
LIG3-213ENST00000590630 Q8TAT8 98 aa8.5□□□□□ -1.05
LIG3-213ENST00000590630 STOML3Q8TAV4 291 aa8.5□□□□□ -1.05
LIG3-213ENST00000590630 RNASE8Q8TDE3 154 aaKnown RBP8.5□□□□□ -1.05
LIG3-213ENST00000590630 C2CD4CQ8TF44 421 aa8.5□□□□□ -1.05
LIG3-213ENST00000590630 RPH3ALQ9UNE2 315 aa8.5□□□□□ -1.05
LIG3-213ENST00000590630 PLECQ15149 4684 aaKnown RBP8.5□□□□□ -1.05
LIG3-213ENST00000590630 PLAC8L1A1L4L8 177 aa8.49□□□□□ -1.05
LIG3-213ENST00000590630 MAP1LC3B2A6NCE7 125 aa8.49□□□□□ -1.05
LIG3-213ENST00000590630 GGTLC3B5MD39 225 aa8.49□□□□□ -1.05
LIG3-213ENST00000590630 K7EQM0 130 aa8.49□□□□□ -1.05
LIG3-213ENST00000590630 ZNF324O75467 553 aaPredicted RBP8.49□□□□□ -1.05
LIG3-213ENST00000590630 RNASE4P34096 147 aaKnown RBP8.49□□□□□ -1.05
LIG3-213ENST00000590630 TCTAP57738 103 aa8.49□□□□□ -1.05
LIG3-213ENST00000590630 BTN1A1Q13410 526 aa8.49□□□□□ -1.05
LIG3-213ENST00000590630 LGALSLQ3ZCW2 172 aaPredicted RBP8.49□□□□□ -1.05
LIG3-213ENST00000590630 DPPA3Q6W0C5 159 aa8.49□□□□□ -1.05
LIG3-213ENST00000590630 GOLT1AQ6ZVE7 132 aa8.49□□□□□ -1.05
LIG3-213ENST00000590630 ZNF767PQ75MW2 155 aa8.49□□□□□ -1.05
LIG3-213ENST00000590630 NKX6-2Q9C056 277 aaPredicted RBP8.49□□□□□ -1.05
LIG3-213ENST00000590630 MAP1LC3BQ9GZQ8 125 aa8.49□□□□□ -1.05
LIG3-213ENST00000590630 TIMM8BQ9Y5J9 83 aaPredicted RBP8.49□□□□□ -1.05
LIG3-213ENST00000590630 DEFB131BA0A096LNP1 70 aa8.48□□□□□ -1.05
LIG3-213ENST00000590630 TCRAP04437 139 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms