RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 FAM24AA6NFZ4 105 aa8.01□□□□□ -1.13
CLIP3-204ENST00000590559 CENPXA8MT69 81 aa8.01□□□□□ -1.13
CLIP3-204ENST00000590559 SIVA1O15304 175 aa8.01□□□□□ -1.13
CLIP3-204ENST00000590559 CST7O76096 145 aa8.01□□□□□ -1.13
CLIP3-204ENST00000590559 NMBP08949 121 aa8.01□□□□□ -1.13
CLIP3-204ENST00000590559 HIST1H1EP10412 219 aaKnown RBP8.01□□□□□ -1.13
CLIP3-204ENST00000590559 INPP1P49441 399 aa8.01□□□□□ -1.13
CLIP3-204ENST00000590559 XGP55808 180 aa8.01□□□□□ -1.13
CLIP3-204ENST00000590559 BTN1A1Q13410 526 aa8.01□□□□□ -1.13
CLIP3-204ENST00000590559 RAB31Q13636 194 aa8.01□□□□□ -1.13
CLIP3-204ENST00000590559 IBA57Q5T440 356 aaKnown RBP8.01□□□□□ -1.13
CLIP3-204ENST00000590559 PRR9Q5T870 116 aa8.01□□□□□ -1.13
CLIP3-204ENST00000590559 ZFAND2AQ8N6M9 145 aa8.01□□□□□ -1.13
CLIP3-204ENST00000590559 ST6GAL2Q96JF0 529 aa8.01□□□□□ -1.13
CLIP3-204ENST00000590559 PGPEP1Q9NXJ5 209 aa8.01□□□□□ -1.13
CLIP3-204ENST00000590559 FUT9Q9Y231 359 aa8.01□□□□□ -1.13
CLIP3-204ENST00000590559 PRELID1Q9Y255 219 aa8.01□□□□□ -1.13
CLIP3-204ENST00000590559 TRGV2A0A075B6R0 118 aa8□□□□□ -1.13
CLIP3-204ENST00000590559 CCDC160A6NGH7 325 aa8□□□□□ -1.13
CLIP3-204ENST00000590559 L7N2F9 121 aa8□□□□□ -1.13
CLIP3-204ENST00000590559 S100A11P31949 105 aa8□□□□□ -1.13
CLIP3-204ENST00000590559 SULT1A1P50225 295 aa8□□□□□ -1.13
CLIP3-204ENST00000590559 VAMP2P63027 116 aa8□□□□□ -1.13
CLIP3-204ENST00000590559 Q6ZQT7 251 aa8□□□□□ -1.13
CLIP3-204ENST00000590559 LYRM2Q9NU23 88 aaPredicted RBP8□□□□□ -1.13
CLIP3-204ENST00000590559 TP53TG3Q9ULZ0 132 aa8□□□□□ -1.13
CLIP3-204ENST00000590559 LSM5Q9Y4Y9 91 aaKnown RBP8□□□□□ -1.13
CLIP3-204ENST00000590559 TRGV1A0A0A0MS02 117 aa7.99□□□□□ -1.13
CLIP3-204ENST00000590559 IGSF23A1L1A6 192 aa7.99□□□□□ -1.13
CLIP3-204ENST00000590559 MPDU1O75352 247 aa7.99□□□□□ -1.13
CLIP3-204ENST00000590559 NXPH4O95158 308 aa7.99□□□□□ -1.13
CLIP3-204ENST00000590559 PYYP10082 97 aa7.99□□□□□ -1.13
CLIP3-204ENST00000590559 CAV2P51636 162 aa7.99□□□□□ -1.13
CLIP3-204ENST00000590559 FHL2Q14192 279 aa7.99□□□□□ -1.13
CLIP3-204ENST00000590559 LYPD1Q8N2G4 141 aa7.99□□□□□ -1.13
CLIP3-204ENST00000590559 EXOC3-AS1Q8N2X6 119 aa7.99□□□□□ -1.13
CLIP3-204ENST00000590559 C12orf45Q8N5I9 185 aaPredicted RBP7.99□□□□□ -1.13
CLIP3-204ENST00000590559 TMEM252Q8N6L7 170 aa7.99□□□□□ -1.13
CLIP3-204ENST00000590559 FAM167A-AS1Q96KT0 104 aa7.99□□□□□ -1.13
CLIP3-204ENST00000590559 C2orf50Q96LR7 162 aa7.99□□□□□ -1.13
CLIP3-204ENST00000590559 VGLL1Q99990 258 aa7.99□□□□□ -1.13
CLIP3-204ENST00000590559 TNFRSF18Q9Y5U5 241 aa7.99□□□□□ -1.13
CLIP3-204ENST00000590559 DMBT1Q9UGM3 2413 aaPredicted RBP7.98□□□□□ -1.13
CLIP3-204ENST00000590559 UBE2L5PA0A1B0GUS4 154 aa7.98□□□□□ -1.13
CLIP3-204ENST00000590559 TCRBP04435 133 aa7.98□□□□□ -1.13
CLIP3-204ENST00000590559 RNASE4P34096 147 aaKnown RBP7.98□□□□□ -1.13
CLIP3-204ENST00000590559 BCAP31P51572 246 aa7.98□□□□□ -1.13
CLIP3-204ENST00000590559 CRYBA4P53673 196 aa7.98□□□□□ -1.13
CLIP3-204ENST00000590559 ZNF846Q147U1 533 aa7.98□□□□□ -1.13
CLIP3-204ENST00000590559 GCSAMLQ5JQS6 135 aa7.98□□□□□ -1.13
CLIP3-204ENST00000590559 CDPF1Q6NVV7 123 aa7.98□□□□□ -1.13
CLIP3-204ENST00000590559 LYPD5Q6UWN5 251 aa7.98□□□□□ -1.13
CLIP3-204ENST00000590559 SLC25A2Q9BXI2 301 aa7.98□□□□□ -1.13
CLIP3-204ENST00000590559 ZNF492Q9P255 531 aa7.98□□□□□ -1.13
CLIP3-204ENST00000590559 PRO0255Q9UI72 69 aa7.98□□□□□ -1.13
CLIP3-204ENST00000590559 ICOSQ9Y6W8 199 aa7.98□□□□□ -1.13
CLIP3-204ENST00000590559 IGHV1OR15-1A0A075B7D0 117 aa7.97□□□□□ -1.13
CLIP3-204ENST00000590559 TRBV7-9A0A0J9YWB2 115 aa7.97□□□□□ -1.13
CLIP3-204ENST00000590559 EPM2AB3EWF7 344 aa7.97□□□□□ -1.13
CLIP3-204ENST00000590559 PAX4O43316 350 aa7.97□□□□□ -1.13
CLIP3-204ENST00000590559 LYRM1O43325 122 aa7.97□□□□□ -1.13
CLIP3-204ENST00000590559 GPX1P07203 203 aa7.97□□□□□ -1.13
CLIP3-204ENST00000590559 FUSP35637 526 aaKnown RBP eCLIP7.97□□□□□ -1.13
CLIP3-204ENST00000590559 BAXQ07812 192 aa7.97□□□□□ -1.13
CLIP3-204ENST00000590559 RAB32Q13637 225 aa7.97□□□□□ -1.13
CLIP3-204ENST00000590559 ICAM4Q14773 271 aa7.97□□□□□ -1.13
CLIP3-204ENST00000590559 ATP6V1FQ16864 119 aa7.97□□□□□ -1.13
CLIP3-204ENST00000590559 IQCF2Q8IXL9 164 aa7.97□□□□□ -1.13
CLIP3-204ENST00000590559 SEC22CQ9BRL7 303 aa7.97□□□□□ -1.13
CLIP3-204ENST00000590559 NPCDR1Q9BY65 106 aa7.97□□□□□ -1.13
CLIP3-204ENST00000590559 TIMM9Q9Y5J7 89 aa7.97□□□□□ -1.13
CLIP3-204ENST00000590559 TRAV6A0A075B6T7 132 aa7.96□□□□□ -1.14
CLIP3-204ENST00000590559 A0A087WTM6 91 aa7.96□□□□□ -1.14
CLIP3-204ENST00000590559 IGKV2-40A0A087WW87 121 aaPredicted RBP7.96□□□□□ -1.14
CLIP3-204ENST00000590559 C5orf51A6NDU8 294 aa7.96□□□□□ -1.14
CLIP3-204ENST00000590559 FAM25EA8MYX2 175 aa7.96□□□□□ -1.14
CLIP3-204ENST00000590559 IGKV2D-40P01614 121 aaPredicted RBP7.96□□□□□ -1.14
CLIP3-204ENST00000590559 PVALBP20472 110 aaPredicted RBP7.96□□□□□ -1.14
CLIP3-204ENST00000590559 FGF7P21781 194 aa7.96□□□□□ -1.14
CLIP3-204ENST00000590559 SLAQ13239 276 aa7.96□□□□□ -1.14
CLIP3-204ENST00000590559 BLNKQ8WV28 456 aa7.96□□□□□ -1.14
CLIP3-204ENST00000590559 MRPL32Q9BYC8 188 aaKnown RBP7.96□□□□□ -1.14
CLIP3-204ENST00000590559 MRPL16Q9NX20 251 aaKnown RBP7.96□□□□□ -1.14
CLIP3-204ENST00000590559 HHLA3Q9XRX5 114 aa7.96□□□□□ -1.14
CLIP3-204ENST00000590559 K7EP13 123 aa7.95□□□□□ -1.14
CLIP3-204ENST00000590559 PRAF2O60831 178 aa7.95□□□□□ -1.14
CLIP3-204ENST00000590559 IGHV3-53P01767 116 aa7.95□□□□□ -1.14
CLIP3-204ENST00000590559 NBEAP1P0C6P0 100 aa7.95□□□□□ -1.14
CLIP3-204ENST00000590559 DNAH10OSP0CZ25 163 aa7.95□□□□□ -1.14
CLIP3-204ENST00000590559 KRTAP10-1P60331 282 aa7.95□□□□□ -1.14
CLIP3-204ENST00000590559 ERVFC1-1P60608 527 aa7.95□□□□□ -1.14
CLIP3-204ENST00000590559 HBG1P69891 147 aa7.95□□□□□ -1.14
CLIP3-204ENST00000590559 HBG2P69892 147 aa7.95□□□□□ -1.14
CLIP3-204ENST00000590559 MRPL23Q16540 153 aaKnown RBP7.95□□□□□ -1.14
CLIP3-204ENST00000590559 TMEM78Q5T7P6 136 aa7.95□□□□□ -1.14
CLIP3-204ENST00000590559 MIR17HGQ75NE6 70 aa7.95□□□□□ -1.14
CLIP3-204ENST00000590559 NFE4Q86UQ8 179 aa7.95□□□□□ -1.14
CLIP3-204ENST00000590559 STX12Q86Y82 276 aa7.95□□□□□ -1.14
CLIP3-204ENST00000590559 FXYD5Q96DB9 178 aa7.95□□□□□ -1.14
CLIP3-204ENST00000590559 AAMDCQ9H7C9 122 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms