RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 DNAH10Q8IVF4 4471 aa8.81□□□□□ -1
SS18-225ENST00000585121 GCSAMLQ5JQS6 135 aa8.8□□□□□ -1
SS18-225ENST00000585121 RPL7L1Q6DKI1 246 aaKnown RBP8.8□□□□□ -1
SS18-225ENST00000585121 ZNF493Q6ZR52 646 aa8.8□□□□□ -1
SS18-225ENST00000585121 SCGB1C1Q8TD33 95 aa8.8□□□□□ -1
SS18-225ENST00000585121 BLNKQ8WV28 456 aa8.8□□□□□ -1
SS18-225ENST00000585121 PRM2P04554 102 aa8.8□□□□□ -1
SS18-225ENST00000585121 DEFB130BP0DP73 79 aa8.8□□□□□ -1
SS18-225ENST00000585121 DEFB130AP0DP74 79 aa8.8□□□□□ -1
SS18-225ENST00000585121 PYYP10082 97 aa8.8□□□□□ -1
SS18-225ENST00000585121 AZU1P20160 251 aa8.8□□□□□ -1
SS18-225ENST00000585121 NDUFA5Q16718 116 aa8.8□□□□□ -1
SS18-225ENST00000585121 UBE2DNLQ8IWF7 75 aa8.8□□□□□ -1
SS18-225ENST00000585121 POM121L12Q8N7R1 296 aa8.8□□□□□ -1
SS18-225ENST00000585121 ODF3Q96PU9 254 aa8.8□□□□□ -1
SS18-225ENST00000585121 MRPL32Q9BYC8 188 aaKnown RBP8.8□□□□□ -1
SS18-225ENST00000585121 SMIM3Q9BZL3 60 aa8.8□□□□□ -1
SS18-225ENST00000585121 TIMM8BQ9Y5J9 83 aaPredicted RBP8.8□□□□□ -1
SS18-225ENST00000585121 NPIPB6E9PJ23 425 aa8.79□□□□□ -1
SS18-225ENST00000585121 CT45A10P0DMU9 189 aa8.79□□□□□ -1
SS18-225ENST00000585121 RAB14P61106 215 aa8.79□□□□□ -1
SS18-225ENST00000585121 TMEM263Q8WUH6 116 aaKnown RBP8.79□□□□□ -1
SS18-225ENST00000585121 LINC00477Q96M19 166 aa8.79□□□□□ -1
SS18-225ENST00000585121 PAXXQ9BUH6 204 aa8.79□□□□□ -1
SS18-225ENST00000585121 SLC25A2Q9BXI2 301 aa8.79□□□□□ -1
SS18-225ENST00000585121 OR51M1Q9H341 326 aa8.79□□□□□ -1
SS18-225ENST00000585121 WFDC1Q9HC57 220 aa8.79□□□□□ -1
SS18-225ENST00000585121 J3KRW8 73 aa8.78□□□□□ -1
SS18-225ENST00000585121 NBEAP1P0C6P0 100 aa8.78□□□□□ -1
SS18-225ENST00000585121 SEC11BP0C7V7 166 aa8.78□□□□□ -1
SS18-225ENST00000585121 CLLU1Q5K131 121 aa8.78□□□□□ -1
SS18-225ENST00000585121 GFI1BQ5VTD9 330 aa8.78□□□□□ -1
SS18-225ENST00000585121 ALKAL2Q6UX46 152 aa8.78□□□□□ -1
SS18-225ENST00000585121 MIR17HGQ75NE6 70 aa8.78□□□□□ -1
SS18-225ENST00000585121 C15orf53Q8NAA6 179 aa8.78□□□□□ -1
SS18-225ENST00000585121 PARD6GQ9BYG4 376 aaPredicted RBP8.78□□□□□ -1
SS18-225ENST00000585121 FUT9Q9Y231 359 aa8.78□□□□□ -1
SS18-225ENST00000585121 CBY3A6NI87 242 aa8.77□□□□□ -1.01
SS18-225ENST00000585121 M0R3E3 92 aa8.77□□□□□ -1.01
SS18-225ENST00000585121 OR7C2O60412 319 aa8.77□□□□□ -1.01
SS18-225ENST00000585121 NDUFB4O95168 129 aa8.77□□□□□ -1.01
SS18-225ENST00000585121 SLC25A5P05141 298 aaKnown RBP8.77□□□□□ -1.01
SS18-225ENST00000585121 ATP5G1P05496 136 aa8.77□□□□□ -1.01
SS18-225ENST00000585121 ATP5G3P48201 142 aa8.77□□□□□ -1.01
SS18-225ENST00000585121 ICAM4Q14773 271 aa8.77□□□□□ -1.01
SS18-225ENST00000585121 FFAR4Q5NUL3 377 aa8.77□□□□□ -1.01
SS18-225ENST00000585121 TMEM88Q6PEY1 159 aa8.77□□□□□ -1.01
SS18-225ENST00000585121 RNF141Q8WVD5 230 aa8.77□□□□□ -1.01
SS18-225ENST00000585121 GNPNAT1Q96EK6 184 aaPredicted RBP8.77□□□□□ -1.01
SS18-225ENST00000585121 NOP10Q9NPE3 64 aaKnown RBP8.77□□□□□ -1.01
SS18-225ENST00000585121 FRAS1Q86XX4 4008 aa8.77□□□□□ -1.01
SS18-225ENST00000585121 TRAV12-3A0A0B4J271 114 aa8.76□□□□□ -1.01
SS18-225ENST00000585121 SNURFLB1AK76 121 aa8.76□□□□□ -1.01
SS18-225ENST00000585121 F5H768 121 aa8.76□□□□□ -1.01
SS18-225ENST00000585121 CSN1S1P47710 185 aa8.76□□□□□ -1.01
SS18-225ENST00000585121 TAS2R45P59539 299 aa8.76□□□□□ -1.01
SS18-225ENST00000585121 ERCC8Q13216 396 aa8.76□□□□□ -1.01
SS18-225ENST00000585121 KIR3DS1Q14943 382 aa8.76□□□□□ -1.01
SS18-225ENST00000585121 TMEM78Q5T7P6 136 aa8.76□□□□□ -1.01
SS18-225ENST00000585121 EXOC3-AS1Q8N2X6 119 aa8.76□□□□□ -1.01
SS18-225ENST00000585121 RNASE8Q8TDE3 154 aaKnown RBP8.76□□□□□ -1.01
SS18-225ENST00000585121 FAM167A-AS1Q96KT0 104 aa8.76□□□□□ -1.01
SS18-225ENST00000585121 PLAC8L1A1L4L8 177 aa8.75□□□□□ -1.01
SS18-225ENST00000585121 OR10J4P0C629 311 aa8.75□□□□□ -1.01
SS18-225ENST00000585121 FAM122CQ6P4D5 195 aa8.75□□□□□ -1.01
SS18-225ENST00000585121 PYGO2Q9BRQ0 406 aa8.75□□□□□ -1.01
SS18-225ENST00000585121 C7orf71A4D174 169 aa8.75□□□□□ -1.01
SS18-225ENST00000585121 GPX1P07203 203 aa8.75□□□□□ -1.01
SS18-225ENST00000585121 SULT1A2P50226 295 aa8.75□□□□□ -1.01
SS18-225ENST00000585121 RAB5CP51148 216 aa8.75□□□□□ -1.01
SS18-225ENST00000585121 RNF212Q495C1 297 aa8.75□□□□□ -1.01
SS18-225ENST00000585121 KHDC3LQ587J8 217 aa8.75□□□□□ -1.01
SS18-225ENST00000585121 C9orf47Q6ZRZ4 202 aa8.75□□□□□ -1.01
SS18-225ENST00000585121 TMED6Q8WW62 240 aa8.75□□□□□ -1.01
SS18-225ENST00000585121 AGPAT4-IT1Q9H0P7 198 aa8.75□□□□□ -1.01
SS18-225ENST00000585121 UMAD1C9J7I0 102 aa8.74□□□□□ -1.01
SS18-225ENST00000585121 NMBP08949 121 aa8.74□□□□□ -1.01
SS18-225ENST00000585121 ATP6V0CP27449 155 aa8.74□□□□□ -1.01
SS18-225ENST00000585121 RNASE4P34096 147 aaKnown RBP8.74□□□□□ -1.01
SS18-225ENST00000585121 UBE2L3P68036 154 aaKnown RBP8.74□□□□□ -1.01
SS18-225ENST00000585121 SERF2P84101 59 aa8.74□□□□□ -1.01
SS18-225ENST00000585121 ACOT6Q3I5F7 207 aaPredicted RBP8.74□□□□□ -1.01
SS18-225ENST00000585121 LYPD1Q8N2G4 141 aa8.74□□□□□ -1.01
SS18-225ENST00000585121 HSD17B11Q8NBQ5 300 aa8.74□□□□□ -1.01
SS18-225ENST00000585121 FXYD5Q96DB9 178 aa8.74□□□□□ -1.01
SS18-225ENST00000585121 ATG101Q9BSB4 218 aa8.74□□□□□ -1.01
SS18-225ENST00000585121 PSMG3Q9BT73 122 aaPredicted RBP8.74□□□□□ -1.01
SS18-225ENST00000585121 IGKV2-40A0A087WW87 121 aaPredicted RBP8.73□□□□□ -1.01
SS18-225ENST00000585121 A0A1W2PPV4 95 aa8.73□□□□□ -1.01
SS18-225ENST00000585121 LINC00862A6NCI5 91 aa8.73□□□□□ -1.01
SS18-225ENST00000585121 IGKV2D-40P01614 121 aaPredicted RBP8.73□□□□□ -1.01
SS18-225ENST00000585121 RANP62826 216 aaKnown RBP8.73□□□□□ -1.01
SS18-225ENST00000585121 MED9Q9NWA0 146 aa8.73□□□□□ -1.01
SS18-225ENST00000585121 KLLNB2CW77 178 aa8.72□□□□□ -1.01
SS18-225ENST00000585121 NUDT3O95989 172 aa8.72□□□□□ -1.01
SS18-225ENST00000585121 M6PRP20645 277 aa8.72□□□□□ -1.01
SS18-225ENST00000585121 FAM3BP58499 235 aaPredicted RBP8.72□□□□□ -1.01
SS18-225ENST00000585121 BLOC1S1P78537 153 aa8.72□□□□□ -1.01
SS18-225ENST00000585121 LINC00336Q6ZUF6 198 aa8.72□□□□□ -1.01
SS18-225ENST00000585121 EIF4E3Q8N5X7 224 aaKnown RBP8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 140.2 ms