RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 COL7A1Q02388 2944 aa13.28□□□□□ -0.28
CCDC40-213ENST00000574933 CA1P00915 261 aaPredicted RBP13.28□□□□□ -0.28
CCDC40-213ENST00000574933 CT45A10P0DMU9 189 aa13.28□□□□□ -0.28
CCDC40-213ENST00000574933 GNG5P63218 68 aa13.28□□□□□ -0.28
CCDC40-213ENST00000574933 ERCC8Q13216 396 aa13.28□□□□□ -0.28
CCDC40-213ENST00000574933 CSNK1G2-AS1Q8NCQ2 148 aa13.28□□□□□ -0.28
CCDC40-213ENST00000574933 HIST1H2BAQ96A08 127 aa13.28□□□□□ -0.28
CCDC40-213ENST00000574933 ATG101Q9BSB4 218 aa13.28□□□□□ -0.28
CCDC40-213ENST00000574933 SLC35B3Q9H1N7 401 aa13.28□□□□□ -0.28
CCDC40-213ENST00000574933 ZNF492Q9P255 531 aa13.28□□□□□ -0.28
CCDC40-213ENST00000574933 TAGLN2P37802 199 aaKnown RBP13.27□□□□□ -0.29
CCDC40-213ENST00000574933 ATP5G3P48201 142 aa13.27□□□□□ -0.29
CCDC40-213ENST00000574933 TMEM78Q5T7P6 136 aa13.27□□□□□ -0.29
CCDC40-213ENST00000574933 CST9LP1Q5W188 147 aa13.27□□□□□ -0.29
CCDC40-213ENST00000574933 GOLT1AQ6ZVE7 132 aa13.27□□□□□ -0.29
CCDC40-213ENST00000574933 RNF183Q96D59 192 aa13.27□□□□□ -0.29
CCDC40-213ENST00000574933 ASCL2Q99929 193 aa13.27□□□□□ -0.29
CCDC40-213ENST00000574933 SPATA25Q9BR10 227 aa13.27□□□□□ -0.29
CCDC40-213ENST00000574933 GNG13Q9P2W3 67 aa13.27□□□□□ -0.29
CCDC40-213ENST00000574933 LENEPQ9Y5L5 61 aa13.27□□□□□ -0.29
CCDC40-213ENST00000574933 FBLL1A6NHQ2 334 aaKnown RBP13.26□□□□□ -0.29
CCDC40-213ENST00000574933 CRXO43186 299 aaPredicted RBP13.26□□□□□ -0.29
CCDC40-213ENST00000574933 IFNA1P01562 189 aa13.26□□□□□ -0.29
CCDC40-213ENST00000574933 NMBP08949 121 aa13.26□□□□□ -0.29
CCDC40-213ENST00000574933 CRISP2P16562 243 aa13.26□□□□□ -0.29
CCDC40-213ENST00000574933 TSPOP30536 169 aa13.26□□□□□ -0.29
CCDC40-213ENST00000574933 ZNF138P52744 262 aa13.26□□□□□ -0.29
CCDC40-213ENST00000574933 CYB561D1Q8N8Q1 229 aa13.26□□□□□ -0.29
CCDC40-213ENST00000574933 K7EQM0 130 aa13.25□□□□□ -0.29
CCDC40-213ENST00000574933 PEX7O00628 323 aa13.25□□□□□ -0.29
CCDC40-213ENST00000574933 BCL2P10415 239 aa13.25□□□□□ -0.29
CCDC40-213ENST00000574933 LEPP41159 167 aa13.25□□□□□ -0.29
CCDC40-213ENST00000574933 CDKN1BP46527 198 aa13.25□□□□□ -0.29
CCDC40-213ENST00000574933 IFITM2Q01629 132 aa13.25□□□□□ -0.29
CCDC40-213ENST00000574933 SPINK13Q1W4C9 94 aa13.25□□□□□ -0.29
CCDC40-213ENST00000574933 TMEM75Q8N9X5 138 aa13.25□□□□□ -0.29
CCDC40-213ENST00000574933 OVOL2Q9BRP0 275 aa13.25□□□□□ -0.29
CCDC40-213ENST00000574933 XCL2Q9UBD3 114 aa13.25□□□□□ -0.29
CCDC40-213ENST00000574933 RPH3ALQ9UNE2 315 aa13.25□□□□□ -0.29
CCDC40-213ENST00000574933 TGP01266 2768 aa13.25□□□□□ -0.29
CCDC40-213ENST00000574933 STAB2Q8WWQ8 2551 aa13.25□□□□□ -0.29
CCDC40-213ENST00000574933 KLLNB2CW77 178 aa13.24□□□□□ -0.29
CCDC40-213ENST00000574933 C11orf94C9JXX5 98 aa13.24□□□□□ -0.29
CCDC40-213ENST00000574933 F6UZH7 168 aa13.24□□□□□ -0.29
CCDC40-213ENST00000574933 M0R2Z0 102 aa13.24□□□□□ -0.29
CCDC40-213ENST00000574933 IGLV2-11P01706 119 aa13.24□□□□□ -0.29
CCDC40-213ENST00000574933 FXYD7P58549 80 aa13.24□□□□□ -0.29
CCDC40-213ENST00000574933 DEFB135Q30KP9 77 aa13.24□□□□□ -0.29
CCDC40-213ENST00000574933 ZNF767PQ75MW2 155 aa13.24□□□□□ -0.29
CCDC40-213ENST00000574933 IGF2BP2-AS1Q96M15 143 aa13.24□□□□□ -0.29
CCDC40-213ENST00000574933 RCHY1Q96PM5 261 aa13.24□□□□□ -0.29
CCDC40-213ENST00000574933 KLF12Q9Y4X4 402 aa13.24□□□□□ -0.29
CCDC40-213ENST00000574933 DNAH9Q9NYC9 4486 aa13.23□□□□□ -0.29
CCDC40-213ENST00000574933 SPRY2O43597 315 aa13.23□□□□□ -0.29
CCDC40-213ENST00000574933 MEF2BQ02080 365 aaPredicted RBP13.23□□□□□ -0.29
CCDC40-213ENST00000574933 ZFAND2AQ8N6M9 145 aa13.23□□□□□ -0.29
CCDC40-213ENST00000574933 C11orf52Q96A22 123 aa13.23□□□□□ -0.29
CCDC40-213ENST00000574933 ZMAT4Q9H898 229 aa13.23□□□□□ -0.29
CCDC40-213ENST00000574933 VAX2Q9UIW0 290 aa13.23□□□□□ -0.29
CCDC40-213ENST00000574933 TRAV8-1A0A0A6YYK1 113 aa13.22□□□□□ -0.29
CCDC40-213ENST00000574933 TRBV6-1A0A0K0K1D8 114 aa13.22□□□□□ -0.29
CCDC40-213ENST00000574933 LOC102723971A0A1B0GUV8 181 aa13.22□□□□□ -0.29
CCDC40-213ENST00000574933 NDUFS6O75380 124 aaKnown RBP13.22□□□□□ -0.29
CCDC40-213ENST00000574933 ZNF705AQ6ZN79 300 aaPredicted RBP13.22□□□□□ -0.29
CCDC40-213ENST00000574933 C2CD4CQ8TF44 421 aa13.22□□□□□ -0.29
CCDC40-213ENST00000574933 C20orf144Q9BQM9 153 aa13.22□□□□□ -0.29
CCDC40-213ENST00000574933 PSG8Q9UQ74 426 aa13.22□□□□□ -0.29
CCDC40-213ENST00000574933 INSP01308 110 aa13.21□□□□□ -0.29
CCDC40-213ENST00000574933 FLI1Q01543 452 aaPredicted RBP13.21□□□□□ -0.29
CCDC40-213ENST00000574933 ZNF506Q5JVG8 444 aa13.21□□□□□ -0.29
CCDC40-213ENST00000574933 C1orf158Q8N1D5 194 aa13.21□□□□□ -0.29
CCDC40-213ENST00000574933 Q8TAT8 98 aa13.21□□□□□ -0.29
CCDC40-213ENST00000574933 RBFOX3A6NFN3 312 aa13.2□□□□□ -0.3
CCDC40-213ENST00000574933 KIR3DS1Q14943 382 aa13.2□□□□□ -0.3
CCDC40-213ENST00000574933 TVP23CQ96ET8 276 aa13.2□□□□□ -0.3
CCDC40-213ENST00000574933 LINC00479Q96M42 142 aa13.2□□□□□ -0.3
CCDC40-213ENST00000574933 FAM210AQ96ND0 272 aa13.2□□□□□ -0.3
CCDC40-213ENST00000574933 NEU1Q99519 415 aa13.2□□□□□ -0.3
CCDC40-213ENST00000574933 RETNQ9HD89 108 aa13.2□□□□□ -0.3
CCDC40-213ENST00000574933 TRAV12-2A0A075B6T6 113 aa13.19□□□□□ -0.3
CCDC40-213ENST00000574933 SCO2A0A1W2PP80 73 aa13.19□□□□□ -0.3
CCDC40-213ENST00000574933 PDE6DO43924 150 aa13.19□□□□□ -0.3
CCDC40-213ENST00000574933 S100A9P06702 114 aaKnown RBP13.19□□□□□ -0.3
CCDC40-213ENST00000574933 AKR1C3P42330 323 aa13.19□□□□□ -0.3
CCDC40-213ENST00000574933 TMEM183BQ1AE95 376 aa13.19□□□□□ -0.3
CCDC40-213ENST00000574933 GFI1BQ5VTD9 330 aa13.19□□□□□ -0.3
CCDC40-213ENST00000574933 TMEM256Q8N2U0 113 aa13.19□□□□□ -0.3
CCDC40-213ENST00000574933 PCNPQ8WW12 178 aaKnown RBP13.19□□□□□ -0.3
CCDC40-213ENST00000574933 FMC1Q96HJ9 113 aa13.19□□□□□ -0.3
CCDC40-213ENST00000574933 TRAV34A0A0B4J273 112 aa13.18□□□□□ -0.3
CCDC40-213ENST00000574933 C7orf71A4D174 169 aa13.18□□□□□ -0.3
CCDC40-213ENST00000574933 RBMY1A1P0DJD3 496 aaKnown RBP13.18□□□□□ -0.3
CCDC40-213ENST00000574933 RBMY1CP0DJD4 496 aa13.18□□□□□ -0.3
CCDC40-213ENST00000574933 RBMY1FQ15415 496 aaKnown RBP13.18□□□□□ -0.3
CCDC40-213ENST00000574933 SAPCD1Q5SSQ6 148 aa13.18□□□□□ -0.3
CCDC40-213ENST00000574933 Q86TA4 180 aa13.18□□□□□ -0.3
CCDC40-213ENST00000574933 OR11H2Q8NH07 326 aa13.18□□□□□ -0.3
CCDC40-213ENST00000574933 SGK494Q96LW2 274 aa13.18□□□□□ -0.3
CCDC40-213ENST00000574933 RARRES2Q99969 163 aa13.18□□□□□ -0.3
CCDC40-213ENST00000574933 GOLT1BQ9Y3E0 138 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 101.6 ms