RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 E7EUB6 86 aa7.6□□□□□ -1.19
CCDC40-212ENST00000574799 H7C2G1 150 aa7.6□□□□□ -1.19
CCDC40-212ENST00000574799 ATP5LO75964 103 aa7.6□□□□□ -1.19
CCDC40-212ENST00000574799 RRN3P1Q2M238 152 aa7.6□□□□□ -1.19
CCDC40-212ENST00000574799 ZNF474Q6S9Z5 364 aaPredicted RBP7.6□□□□□ -1.19
CCDC40-212ENST00000574799 FAM90A1Q86YD7 464 aa7.6□□□□□ -1.19
CCDC40-212ENST00000574799 MBD3L2Q8NHZ7 208 aaPredicted RBP7.6□□□□□ -1.19
CCDC40-212ENST00000574799 PRSS29PA6NIE9 313 aa7.6□□□□□ -1.19
CCDC40-212ENST00000574799 E9PLD3 99 aa7.6□□□□□ -1.19
CCDC40-212ENST00000574799 SNCGO76070 127 aa7.6□□□□□ -1.19
CCDC40-212ENST00000574799 CCL3L1P16619 93 aa7.6□□□□□ -1.19
CCDC40-212ENST00000574799 PRTN3P24158 256 aa7.6□□□□□ -1.19
CCDC40-212ENST00000574799 FOXI1Q12951 378 aa7.6□□□□□ -1.19
CCDC40-212ENST00000574799 C17orf58Q2M2W7 97 aa7.6□□□□□ -1.19
CCDC40-212ENST00000574799 Q6ZS92 163 aa7.6□□□□□ -1.19
CCDC40-212ENST00000574799 S4R3C0 116 aa7.6□□□□□ -1.19
CCDC40-212ENST00000574799 TRAV8-2A0A0B4J237 113 aa7.59□□□□□ -1.19
CCDC40-212ENST00000574799 GAGE5Q13069 117 aa7.59□□□□□ -1.19
CCDC40-212ENST00000574799 GAGE6Q13070 117 aa7.59□□□□□ -1.19
CCDC40-212ENST00000574799 ZNF562Q6V9R5 426 aa7.59□□□□□ -1.19
CCDC40-212ENST00000574799 SMIM20Q8N5G0 67 aa7.59□□□□□ -1.19
CCDC40-212ENST00000574799 Q8NA96 180 aa7.59□□□□□ -1.19
CCDC40-212ENST00000574799 PTH2Q96A98 100 aa7.59□□□□□ -1.19
CCDC40-212ENST00000574799 C8orf49Q96NF6 230 aa7.59□□□□□ -1.19
CCDC40-212ENST00000574799 SLC25A39Q9BZJ4 359 aaPredicted RBP7.59□□□□□ -1.19
CCDC40-212ENST00000574799 POU2AF1Q16633 256 aa7.59□□□□□ -1.19
CCDC40-212ENST00000574799 Q1RN00 199 aa7.59□□□□□ -1.19
CCDC40-212ENST00000574799 ZCCHC24Q8N2G6 241 aaKnown RBP7.59□□□□□ -1.19
CCDC40-212ENST00000574799 NGBQ9NPG2 151 aa7.59□□□□□ -1.19
CCDC40-212ENST00000574799 MRPL35Q9NZE8 188 aaKnown RBP7.59□□□□□ -1.19
CCDC40-212ENST00000574799 LINC01549A6NIU2 74 aa7.59□□□□□ -1.2
CCDC40-212ENST00000574799 GAGE2BQ13066 116 aa7.59□□□□□ -1.2
CCDC40-212ENST00000574799 GAGE2EQ4V326 116 aa7.59□□□□□ -1.2
CCDC40-212ENST00000574799 VKORC1Q9BQB6 163 aa7.59□□□□□ -1.2
CCDC40-212ENST00000574799 TMEM133Q9H2Q1 129 aa7.59□□□□□ -1.2
CCDC40-212ENST00000574799 GAGE2DQ9UEU5 116 aa7.59□□□□□ -1.2
CCDC40-212ENST00000574799 A0A1W2PPI3 338 aa7.58□□□□□ -1.2
CCDC40-212ENST00000574799 RPL7P18124 248 aaKnown RBP7.58□□□□□ -1.2
CCDC40-212ENST00000574799 Q71RC1 249 aaPredicted RBP7.58□□□□□ -1.2
CCDC40-212ENST00000574799 C17orf77Q96MU5 243 aa7.58□□□□□ -1.2
CCDC40-212ENST00000574799 C1QTNF4Q9BXJ3 329 aa7.58□□□□□ -1.2
CCDC40-212ENST00000574799 TRBV20-1A0A075B6N2 111 aa7.58□□□□□ -1.2
CCDC40-212ENST00000574799 A8MWV9 139 aa7.58□□□□□ -1.2
CCDC40-212ENST00000574799 NXT2Q9NPJ8 142 aaKnown RBP7.58□□□□□ -1.2
CCDC40-212ENST00000574799 HIGD1BQ9P298 99 aa7.58□□□□□ -1.2
CCDC40-212ENST00000574799 SLC25A15Q9Y619 301 aa7.58□□□□□ -1.2
CCDC40-212ENST00000574799 SH2D1AO60880 128 aa7.58□□□□□ -1.2
CCDC40-212ENST00000574799 TRGV9Q99603 122 aa7.58□□□□□ -1.2
CCDC40-212ENST00000574799 RAXQ9Y2V3 346 aa7.58□□□□□ -1.2
CCDC40-212ENST00000574799 TRAV17A0A0B4J275 112 aa7.57□□□□□ -1.2
CCDC40-212ENST00000574799 CCL8P80075 99 aa7.57□□□□□ -1.2
CCDC40-212ENST00000574799 Q8TAT8 98 aa7.57□□□□□ -1.2
CCDC40-212ENST00000574799 IGKV2-40A0A087WW87 121 aaPredicted RBP7.57□□□□□ -1.2
CCDC40-212ENST00000574799 A0A096LNJ9 63 aa7.57□□□□□ -1.2
CCDC40-212ENST00000574799 IGKV2D-40P01614 121 aaPredicted RBP7.57□□□□□ -1.2
CCDC40-212ENST00000574799 GP9P14770 177 aa7.57□□□□□ -1.2
CCDC40-212ENST00000574799 GATA3P23771 443 aa7.57□□□□□ -1.2
CCDC40-212ENST00000574799 KLRD1Q13241 179 aa7.57□□□□□ -1.2
CCDC40-212ENST00000574799 Q6ZUT4 128 aa7.57□□□□□ -1.2
CCDC40-212ENST00000574799 AGRNO00468 2067 aa7.57□□□□□ -1.2
CCDC40-212ENST00000574799 IGKV1D-37A0A075B6S9 117 aa7.57□□□□□ -1.2
CCDC40-212ENST00000574799 ODF1Q14990 250 aa7.57□□□□□ -1.2
CCDC40-212ENST00000574799 C1orf162Q8NEQ5 155 aaPredicted RBP7.57□□□□□ -1.2
CCDC40-212ENST00000574799 PPDPFLQ8WWR9 84 aa7.57□□□□□ -1.2
CCDC40-212ENST00000574799 TPSG1Q9NRR2 321 aa7.57□□□□□ -1.2
CCDC40-212ENST00000574799 FAM90A27PA6NNH2 459 aa7.56□□□□□ -1.2
CCDC40-212ENST00000574799 PRRG2O14669 202 aa7.56□□□□□ -1.2
CCDC40-212ENST00000574799 MYCNOSP40205 109 aa7.56□□□□□ -1.2
CCDC40-212ENST00000574799 HERV-K104P63124 156 aa7.56□□□□□ -1.2
CCDC40-212ENST00000574799 PRB3Q04118 309 aaPredicted RBP7.56□□□□□ -1.2
CCDC40-212ENST00000574799 TMEM167AQ8TBQ9 72 aa7.56□□□□□ -1.2
CCDC40-212ENST00000574799 FCN3O75636 299 aa7.56□□□□□ -1.2
CCDC40-212ENST00000574799 TNFRSF6BO95407 300 aa7.56□□□□□ -1.2
CCDC40-212ENST00000574799 PROCRQ9UNN8 238 aa7.56□□□□□ -1.2
CCDC40-212ENST00000574799 ZNF815PA8K554 130 aa7.56□□□□□ -1.2
CCDC40-212ENST00000574799 GATA1P15976 413 aaPredicted RBP7.56□□□□□ -1.2
CCDC40-212ENST00000574799 THAP8Q8NA92 274 aa7.56□□□□□ -1.2
CCDC40-212ENST00000574799 TMEM262E9PQX1 116 aa7.55□□□□□ -1.2
CCDC40-212ENST00000574799 CD40P25942 277 aa7.55□□□□□ -1.2
CCDC40-212ENST00000574799 XGP55808 180 aa7.55□□□□□ -1.2
CCDC40-212ENST00000574799 TM2D2Q9BX73 214 aa7.55□□□□□ -1.2
CCDC40-212ENST00000574799 COL6A6A6NMZ7 2263 aa7.55□□□□□ -1.2
CCDC40-212ENST00000574799 CCL17Q92583 94 aa7.55□□□□□ -1.2
CCDC40-212ENST00000574799 MSRB1Q9NZV6 116 aa7.55□□□□□ -1.2
CCDC40-212ENST00000574799 CACNA1BQ00975 2339 aa7.55□□□□□ -1.2
CCDC40-212ENST00000574799 DIAPH2-AS1Q14236 149 aa7.55□□□□□ -1.2
CCDC40-212ENST00000574799 SPANXN1Q5VSR9 72 aa7.55□□□□□ -1.2
CCDC40-212ENST00000574799 C1orf122Q6ZSJ8 110 aa7.55□□□□□ -1.2
CCDC40-212ENST00000574799 IGHV3OR16-8A0A075B7F1 116 aa7.54□□□□□ -1.2
CCDC40-212ENST00000574799 NBPF19A0A087WUL8 3843 aa7.54□□□□□ -1.2
CCDC40-212ENST00000574799 ZNF785A8K8V0 405 aa7.54□□□□□ -1.2
CCDC40-212ENST00000574799 NDUFB3O43676 98 aa7.54□□□□□ -1.2
CCDC40-212ENST00000574799 PIP4P2Q8N4L2 257 aa7.54□□□□□ -1.2
CCDC40-212ENST00000574799 MAPKAPK5-AS1Q8N8E1 139 aa7.54□□□□□ -1.2
CCDC40-212ENST00000574799 TMEM75Q8N9X5 138 aa7.54□□□□□ -1.2
CCDC40-212ENST00000574799 SCGB3A1Q96QR1 104 aa7.54□□□□□ -1.2
CCDC40-212ENST00000574799 VCX2Q9H322 139 aa7.54□□□□□ -1.2
CCDC40-212ENST00000574799 BEX4Q9NWD9 120 aaPredicted RBP7.54□□□□□ -1.2
CCDC40-212ENST00000574799 ERG28Q9UKR5 140 aa7.54□□□□□ -1.2
CCDC40-212ENST00000574799 IGHV3-35A0A0C4DH35 117 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms