RNA–Protein interactions for RNA: ENST00000573955.1

USP43-204, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 1 (best)

Gene USP43, Length 2,641 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-204ENST00000573955 CCDC168Q8NDH2 2452 aa12.58□□□□□ -0.4
USP43-204ENST00000573955 SNAI2O43623 268 aa12.58□□□□□ -0.4
USP43-204ENST00000573955 MGST1P10620 155 aaKnown RBP12.58□□□□□ -0.4
USP43-204ENST00000573955 CYSLTR1Q9Y271 337 aa12.58□□□□□ -0.4
USP43-204ENST00000573955 VWC2LB2RUY7 222 aa12.57□□□□□ -0.4
USP43-204ENST00000573955 NDUFA3O95167 84 aa12.57□□□□□ -0.4
USP43-204ENST00000573955 NDPQ00604 133 aa12.57□□□□□ -0.4
USP43-204ENST00000573955 ZNF562Q6V9R5 426 aa12.57□□□□□ -0.4
USP43-204ENST00000573955 TMEM116Q8NCL8 245 aa12.57□□□□□ -0.4
USP43-204ENST00000573955 NPBQ8NG41 125 aa12.57□□□□□ -0.4
USP43-204ENST00000573955 OR1L4Q8NGR5 311 aa12.57□□□□□ -0.4
USP43-204ENST00000573955 TXNDC17Q9BRA2 123 aa12.57□□□□□ -0.4
USP43-204ENST00000573955 MRPL32Q9BYC8 188 aaKnown RBP12.57□□□□□ -0.4
USP43-204ENST00000573955 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.57□□□□□ -0.4
USP43-204ENST00000573955 SAA4P35542 130 aa12.57□□□□□ -0.4
USP43-204ENST00000573955 SAMD5Q5TGI4 173 aa12.57□□□□□ -0.4
USP43-204ENST00000573955 HIST2H2BCQ6DN03 193 aa12.57□□□□□ -0.4
USP43-204ENST00000573955 RAX2Q96IS3 184 aa12.57□□□□□ -0.4
USP43-204ENST00000573955 A4D1N5 150 aa12.56□□□□□ -0.4
USP43-204ENST00000573955 PVRIGQ6DKI7 326 aa12.56□□□□□ -0.4
USP43-204ENST00000573955 FAM168AQ92567 244 aa12.56□□□□□ -0.4
USP43-204ENST00000573955 NDFIP1Q9BT67 221 aa12.56□□□□□ -0.4
USP43-204ENST00000573955 PAXXQ9BUH6 204 aa12.56□□□□□ -0.4
USP43-204ENST00000573955 CSPG4Q6UVK1 2322 aa12.56□□□□□ -0.4
USP43-204ENST00000573955 IGHV4-61A0A0C4DH41 118 aa12.56□□□□□ -0.4
USP43-204ENST00000573955 H3BTX0 84 aa12.56□□□□□ -0.4
USP43-204ENST00000573955 I3L2K1 104 aa12.56□□□□□ -0.4
USP43-204ENST00000573955 FOXE3Q13461 319 aa12.56□□□□□ -0.4
USP43-204ENST00000573955 TIGITQ495A1 244 aa12.56□□□□□ -0.4
USP43-204ENST00000573955 GRAMD2BQ96HH9 432 aa12.56□□□□□ -0.4
USP43-204ENST00000573955 APCP25054 2843 aa12.55□□□□□ -0.4
USP43-204ENST00000573955 ATP5J2P56134 94 aa12.55□□□□□ -0.4
USP43-204ENST00000573955 TCL1AP56279 114 aa12.55□□□□□ -0.4
USP43-204ENST00000573955 LYZP61626 148 aa12.55□□□□□ -0.4
USP43-204ENST00000573955 MINOS1Q5TGZ0 78 aa12.55□□□□□ -0.4
USP43-204ENST00000573955 TRGV9Q99603 122 aa12.55□□□□□ -0.4
USP43-204ENST00000573955 MINOS1-NBL1R4GNA1 71 aa12.55□□□□□ -0.4
USP43-204ENST00000573955 TLN2Q9Y4G6 2542 aa12.55□□□□□ -0.4
USP43-204ENST00000573955 F8W1H4 67 aa12.55□□□□□ -0.4
USP43-204ENST00000573955 UBE2E1P51965 193 aa12.55□□□□□ -0.4
USP43-204ENST00000573955 TTC9CQ8N5M4 171 aa12.55□□□□□ -0.4
USP43-204ENST00000573955 VGLL1Q99990 258 aa12.55□□□□□ -0.4
USP43-204ENST00000573955 ZNF331Q9NQX6 463 aaPredicted RBP12.55□□□□□ -0.4
USP43-204ENST00000573955 SH2D7A6NKC9 451 aaPredicted RBP12.54□□□□□ -0.4
USP43-204ENST00000573955 PIP4P2Q8N4L2 257 aa12.54□□□□□ -0.4
USP43-204ENST00000573955 ARPC1AQ92747 370 aa12.54□□□□□ -0.4
USP43-204ENST00000573955 GCN1Q92616 2671 aaKnown RBP12.54□□□□□ -0.4
USP43-204ENST00000573955 K7EIM0 57 aa12.54□□□□□ -0.4
USP43-204ENST00000573955 KLF5Q13887 457 aaPredicted RBP12.54□□□□□ -0.4
USP43-204ENST00000573955 ASPHD1Q5U4P2 390 aa12.54□□□□□ -0.4
USP43-204ENST00000573955 AJUBAQ96IF1 538 aa12.54□□□□□ -0.4
USP43-204ENST00000573955 LINC00479Q96M42 142 aa12.54□□□□□ -0.4
USP43-204ENST00000573955 IGHV3-23P01764 117 aa12.53□□□□□ -0.4
USP43-204ENST00000573955 WFDC2Q14508 124 aa12.53□□□□□ -0.4
USP43-204ENST00000573955 C11orf52Q96A22 123 aa12.53□□□□□ -0.4
USP43-204ENST00000573955 RASL11BQ9BPW5 248 aa12.53□□□□□ -0.4
USP43-204ENST00000573955 PIMREGQ9BSJ6 248 aa12.53□□□□□ -0.4
USP43-204ENST00000573955 LY96Q9Y6Y9 160 aa12.53□□□□□ -0.4
USP43-204ENST00000573955 LEPROTL1O95214 131 aa12.53□□□□□ -0.4
USP43-204ENST00000573955 CENPWQ5EE01 88 aa12.53□□□□□ -0.4
USP43-204ENST00000573955 Q8N6K4 173 aa12.53□□□□□ -0.4
USP43-204ENST00000573955 ZNF469Q96JG9 3925 aaPredicted RBP12.52□□□□□ -0.4
USP43-204ENST00000573955 BRD3OSQ6XYD6 125 aa12.52□□□□□ -0.4
USP43-204ENST00000573955 NHLRC2Q8NBF2 726 aa12.52□□□□□ -0.4
USP43-204ENST00000573955 FXYD5Q96DB9 178 aa12.52□□□□□ -0.4
USP43-204ENST00000573955 RABAC1Q9UI14 185 aa12.52□□□□□ -0.4
USP43-204ENST00000573955 FASNP49327 2511 aaKnown RBP12.52□□□□□ -0.41
USP43-204ENST00000573955 IGHV4-30-2A0A087WSY4 118 aa12.52□□□□□ -0.41
USP43-204ENST00000573955 C9JCJ5 164 aa12.52□□□□□ -0.41
USP43-204ENST00000573955 FAM106CPP0CH98 169 aa12.52□□□□□ -0.41
USP43-204ENST00000573955 ETDBQ3ZM63 59 aa12.52□□□□□ -0.41
USP43-204ENST00000573955 CENPVL3A0A0U1RRI6 287 aa12.51□□□□□ -0.41
USP43-204ENST00000573955 OOSP1A8MZH6 123 aa12.51□□□□□ -0.41
USP43-204ENST00000573955 NPFFO15130 113 aa12.51□□□□□ -0.41
USP43-204ENST00000573955 KRTAP10-9P60411 292 aa12.51□□□□□ -0.41
USP43-204ENST00000573955 FAM162BQ5T6X4 162 aa12.51□□□□□ -0.41
USP43-204ENST00000573955 SH2D6Q7Z4S9 175 aa12.51□□□□□ -0.41
USP43-204ENST00000573955 A0A1W2PRE2 83 aa12.51□□□□□ -0.41
USP43-204ENST00000573955 IGKV1-17P01599 117 aa12.51□□□□□ -0.41
USP43-204ENST00000573955 FCGR2BP31994 310 aaPredicted RBP12.51□□□□□ -0.41
USP43-204ENST00000573955 GNG5P63218 68 aa12.51□□□□□ -0.41
USP43-204ENST00000573955 LINC00173Q6ZV60 143 aa12.51□□□□□ -0.41
USP43-204ENST00000573955 Q8N9W7 124 aa12.51□□□□□ -0.41
USP43-204ENST00000573955 SGK494Q96LW2 274 aa12.51□□□□□ -0.41
USP43-204ENST00000573955 C1QTNF4Q9BXJ3 329 aa12.51□□□□□ -0.41
USP43-204ENST00000573955 MAP1LC3CQ9BXW4 147 aa12.51□□□□□ -0.41
USP43-204ENST00000573955 PRB4P10163 310 aaPredicted RBP12.5□□□□□ -0.41
USP43-204ENST00000573955 C10orf105Q8TEF2 133 aa12.5□□□□□ -0.41
USP43-204ENST00000573955 SRSF8Q9BRL6 282 aaKnown RBP12.5□□□□□ -0.41
USP43-204ENST00000573955 HECTD1Q9ULT8 2610 aa12.5□□□□□ -0.41
USP43-204ENST00000573955 IGHV7-81A0A0B4J1V7 117 aa12.5□□□□□ -0.41
USP43-204ENST00000573955 TMEM219Q86XT9 240 aa12.5□□□□□ -0.41
USP43-204ENST00000573955 FANCD2OSQ96PS1 177 aa12.5□□□□□ -0.41
USP43-204ENST00000573955 HIGD1AQ9Y241 93 aa12.5□□□□□ -0.41
USP43-204ENST00000573955 ITPR2Q14571 2701 aa12.5□□□□□ -0.41
USP43-204ENST00000573955 TRAV40A0A0B4J280 105 aa12.49□□□□□ -0.41
USP43-204ENST00000573955 EBI3Q14213 229 aa12.49□□□□□ -0.41
USP43-204ENST00000573955 ECSCRQ19T08 205 aa12.49□□□□□ -0.41
USP43-204ENST00000573955 OR2J3O76001 311 aa12.49□□□□□ -0.41
USP43-204ENST00000573955 MT-ATP8P03928 68 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms