RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 MBPP02686 304 aaPredicted RBP12.92□□□□□ -0.34
NUP88-203ENST00000572019 OR4E1P0C645 316 aa12.92□□□□□ -0.34
NUP88-203ENST00000572019 NRARPQ7Z6K4 114 aa12.92□□□□□ -0.34
NUP88-203ENST00000572019 NFE4Q86UQ8 179 aa12.92□□□□□ -0.34
NUP88-203ENST00000572019 ZFAND2AQ8N6M9 145 aa12.92□□□□□ -0.34
NUP88-203ENST00000572019 GSKIPQ9P0R6 139 aa12.92□□□□□ -0.34
NUP88-203ENST00000572019 PRO0255Q9UI72 69 aa12.92□□□□□ -0.34
NUP88-203ENST00000572019 HHLA3Q9XRX5 114 aa12.92□□□□□ -0.34
NUP88-203ENST00000572019 TRBV19A0A075B6N1 114 aa12.91□□□□□ -0.34
NUP88-203ENST00000572019 IGKV2-40A0A087WW87 121 aaPredicted RBP12.91□□□□□ -0.34
NUP88-203ENST00000572019 NDUFB6O95139 128 aa12.91□□□□□ -0.34
NUP88-203ENST00000572019 IGKV2D-40P01614 121 aaPredicted RBP12.91□□□□□ -0.34
NUP88-203ENST00000572019 CAMLGP49069 296 aa12.91□□□□□ -0.34
NUP88-203ENST00000572019 TAS2R30P59541 319 aa12.91□□□□□ -0.34
NUP88-203ENST00000572019 Q6ZSN1 163 aa12.91□□□□□ -0.34
NUP88-203ENST00000572019 EXOC3-AS1Q8N2X6 119 aa12.91□□□□□ -0.34
NUP88-203ENST00000572019 BCL7BQ9BQE9 202 aa12.91□□□□□ -0.34
NUP88-203ENST00000572019 FAM30AQ9NZY2 134 aa12.91□□□□□ -0.34
NUP88-203ENST00000572019 LY96Q9Y6Y9 160 aa12.91□□□□□ -0.34
NUP88-203ENST00000572019 E5RGE8 158 aa12.9□□□□□ -0.34
NUP88-203ENST00000572019 MPDU1O75352 247 aa12.9□□□□□ -0.34
NUP88-203ENST00000572019 SFTA3P0C7M3 94 aa12.9□□□□□ -0.34
NUP88-203ENST00000572019 PYYP10082 97 aa12.9□□□□□ -0.34
NUP88-203ENST00000572019 GUK1Q16774 197 aa12.9□□□□□ -0.34
NUP88-203ENST00000572019 NEGR1Q7Z3B1 354 aa12.9□□□□□ -0.34
NUP88-203ENST00000572019 VGLL1Q99990 258 aa12.9□□□□□ -0.34
NUP88-203ENST00000572019 GGACTQ9BVM4 153 aa12.9□□□□□ -0.34
NUP88-203ENST00000572019 K7EQD1 137 aa12.89□□□□□ -0.35
NUP88-203ENST00000572019 CCSO14618 274 aa12.89□□□□□ -0.35
NUP88-203ENST00000572019 ZNF253O75346 499 aa12.89□□□□□ -0.35
NUP88-203ENST00000572019 CRISP2P16562 243 aa12.89□□□□□ -0.35
NUP88-203ENST00000572019 MRPL23Q16540 153 aaKnown RBP12.89□□□□□ -0.35
NUP88-203ENST00000572019 IBA57Q5T440 356 aaKnown RBP12.89□□□□□ -0.35
NUP88-203ENST00000572019 MRPL53Q96EL3 112 aaKnown RBP12.89□□□□□ -0.35
NUP88-203ENST00000572019 LRCOL1A6NCL2 159 aa12.88□□□□□ -0.35
NUP88-203ENST00000572019 CST7O76096 145 aa12.88□□□□□ -0.35
NUP88-203ENST00000572019 GPX1P07203 203 aa12.88□□□□□ -0.35
NUP88-203ENST00000572019 BTCP35070 178 aa12.88□□□□□ -0.35
NUP88-203ENST00000572019 ZNF479Q96JC4 524 aa12.88□□□□□ -0.35
NUP88-203ENST00000572019 FAM229AH3BQW9 127 aa12.87□□□□□ -0.35
NUP88-203ENST00000572019 RGS13O14921 159 aa12.87□□□□□ -0.35
NUP88-203ENST00000572019 BAK1Q16611 211 aa12.87□□□□□ -0.35
NUP88-203ENST00000572019 BLNKQ8WV28 456 aa12.87□□□□□ -0.35
NUP88-203ENST00000572019 DEDD2Q8WXF8 326 aa12.87□□□□□ -0.35
NUP88-203ENST00000572019 LINC00477Q96M19 166 aa12.87□□□□□ -0.35
NUP88-203ENST00000572019 SRRQ9GZT4 340 aa12.87□□□□□ -0.35
NUP88-203ENST00000572019 C11orf1Q9H5F2 150 aa12.87□□□□□ -0.35
NUP88-203ENST00000572019 WDR83OSQ9Y284 106 aa12.87□□□□□ -0.35
NUP88-203ENST00000572019 IGHV1OR15-1A0A075B7D0 117 aa12.86□□□□□ -0.35
NUP88-203ENST00000572019 FAM24AA6NFZ4 105 aa12.86□□□□□ -0.35
NUP88-203ENST00000572019 J3QL48 77 aa12.86□□□□□ -0.35
NUP88-203ENST00000572019 GCSAMLQ5JQS6 135 aa12.86□□□□□ -0.35
NUP88-203ENST00000572019 Q6ZRG5 221 aa12.86□□□□□ -0.35
NUP88-203ENST00000572019 C9orf47Q6ZRZ4 202 aa12.86□□□□□ -0.35
NUP88-203ENST00000572019 Q8TAT8 98 aa12.86□□□□□ -0.35
NUP88-203ENST00000572019 MRPL32Q9BYC8 188 aaKnown RBP12.86□□□□□ -0.35
NUP88-203ENST00000572019 SLC39A9Q9NUM3 307 aa12.86□□□□□ -0.35
NUP88-203ENST00000572019 TRAV9-2A0A087WT02 112 aa12.85□□□□□ -0.35
NUP88-203ENST00000572019 IGLV5-52A0A0A0MRZ9 124 aa12.85□□□□□ -0.35
NUP88-203ENST00000572019 LOC100131303A0A0U1RQF7 123 aa12.85□□□□□ -0.35
NUP88-203ENST00000572019 GYPEP15421 78 aa12.85□□□□□ -0.35
NUP88-203ENST00000572019 FAM122CQ6P4D5 195 aa12.85□□□□□ -0.35
NUP88-203ENST00000572019 OR1L4Q8NGR5 311 aa12.85□□□□□ -0.35
NUP88-203ENST00000572019 LSM5Q9Y4Y9 91 aaKnown RBP12.85□□□□□ -0.35
NUP88-203ENST00000572019 TRGV4A0A0C4DH28 118 aa12.84□□□□□ -0.35
NUP88-203ENST00000572019 UBE2L5PA0A1B0GUS4 154 aa12.84□□□□□ -0.35
NUP88-203ENST00000572019 CRYGDP07320 174 aa12.84□□□□□ -0.35
NUP88-203ENST00000572019 HIST1H1EP10412 219 aaKnown RBP12.84□□□□□ -0.35
NUP88-203ENST00000572019 SRIP30626 198 aa12.84□□□□□ -0.35
NUP88-203ENST00000572019 MUC21Q5SSG8 566 aa12.84□□□□□ -0.35
NUP88-203ENST00000572019 TMEM70Q9BUB7 260 aa12.84□□□□□ -0.35
NUP88-203ENST00000572019 TMEM14CQ9P0S9 112 aa12.84□□□□□ -0.35
NUP88-203ENST00000572019 EVI2AP22794 236 aa12.83□□□□□ -0.36
NUP88-203ENST00000572019 ZNF415Q09FC8 603 aa12.83□□□□□ -0.36
NUP88-203ENST00000572019 VWC2Q2TAL6 325 aa12.83□□□□□ -0.36
NUP88-203ENST00000572019 MITD1Q8WV92 249 aa12.83□□□□□ -0.36
NUP88-203ENST00000572019 PFDN5Q99471 154 aa12.83□□□□□ -0.36
NUP88-203ENST00000572019 SDHCQ99643 169 aaPredicted RBP12.83□□□□□ -0.36
NUP88-203ENST00000572019 ARPC5LQ9BPX5 153 aa12.83□□□□□ -0.36
NUP88-203ENST00000572019 SLC25A2Q9BXI2 301 aa12.83□□□□□ -0.36
NUP88-203ENST00000572019 UQCC1Q9NVA1 299 aa12.83□□□□□ -0.36
NUP88-203ENST00000572019 ZNF492Q9P255 531 aa12.83□□□□□ -0.36
NUP88-203ENST00000572019 TIMM9Q9Y5J7 89 aa12.83□□□□□ -0.36
NUP88-203ENST00000572019 RPL29P47914 159 aaKnown RBP12.82□□□□□ -0.36
NUP88-203ENST00000572019 BCAP31P51572 246 aa12.82□□□□□ -0.36
NUP88-203ENST00000572019 CAV2P51636 162 aa12.82□□□□□ -0.36
NUP88-203ENST00000572019 SLAQ13239 276 aa12.82□□□□□ -0.36
NUP88-203ENST00000572019 FAM167A-AS1Q96KT0 104 aa12.82□□□□□ -0.36
NUP88-203ENST00000572019 PRELID1Q9Y255 219 aa12.82□□□□□ -0.36
NUP88-203ENST00000572019 IGSF23A1L1A6 192 aa12.81□□□□□ -0.36
NUP88-203ENST00000572019 L7N2F9 121 aa12.81□□□□□ -0.36
NUP88-203ENST00000572019 NOL3O60936 208 aaKnown RBP12.81□□□□□ -0.36
NUP88-203ENST00000572019 VAMP2P63027 116 aa12.81□□□□□ -0.36
NUP88-203ENST00000572019 BAXQ07812 192 aa12.81□□□□□ -0.36
NUP88-203ENST00000572019 RAB31Q13636 194 aa12.81□□□□□ -0.36
NUP88-203ENST00000572019 LRP1Q07954 4544 aaKnown RBP12.81□□□□□ -0.36
NUP88-203ENST00000572019 NMBP08949 121 aa12.8□□□□□ -0.36
NUP88-203ENST00000572019 PDE6HQ13956 83 aa12.8□□□□□ -0.36
NUP88-203ENST00000572019 IQCF2Q8IXL9 164 aa12.8□□□□□ -0.36
NUP88-203ENST00000572019 Q8N814 137 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms