RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 UBE2L5PA0A1B0GUS4 154 aa4.83□□□□□ -1.64
CHD3-213ENST00000571249 C17orf112F2Z3M2 114 aa4.83□□□□□ -1.64
CHD3-213ENST00000571249 F8W036 122 aa4.83□□□□□ -1.64
CHD3-213ENST00000571249 SNAPINO95295 136 aa4.83□□□□□ -1.64
CHD3-213ENST00000571249 SRP19P09132 144 aaKnown RBP4.83□□□□□ -1.64
CHD3-213ENST00000571249 GIG44P09565 113 aaPredicted RBP4.83□□□□□ -1.64
CHD3-213ENST00000571249 SFTA3P0C7M3 94 aa4.83□□□□□ -1.64
CHD3-213ENST00000571249 RNASE2P10153 161 aaKnown RBP4.83□□□□□ -1.64
CHD3-213ENST00000571249 MYOD1P15172 320 aa4.83□□□□□ -1.64
CHD3-213ENST00000571249 HTN3P15516 51 aa4.83□□□□□ -1.64
CHD3-213ENST00000571249 FGF7P21781 194 aa4.83□□□□□ -1.64
CHD3-213ENST00000571249 GPX4P36969 197 aaPredicted RBP4.83□□□□□ -1.64
CHD3-213ENST00000571249 OPRK1P41145 380 aa4.83□□□□□ -1.64
CHD3-213ENST00000571249 HOXA1P49639 335 aaPredicted RBP4.83□□□□□ -1.64
CHD3-213ENST00000571249 CCL20P78556 96 aa4.83□□□□□ -1.64
CHD3-213ENST00000571249 AKR1C1Q04828 323 aa4.83□□□□□ -1.64
CHD3-213ENST00000571249 MORN3Q6PF18 240 aaPredicted RBP4.83□□□□□ -1.64
CHD3-213ENST00000571249 ATRAIDQ6UW56 229 aa4.83□□□□□ -1.64
CHD3-213ENST00000571249 SIGLEC15Q6ZMC9 328 aa4.83□□□□□ -1.64
CHD3-213ENST00000571249 STHQ8IWL8 128 aa4.83□□□□□ -1.64
CHD3-213ENST00000571249 SFT2D1Q8WV19 159 aa4.83□□□□□ -1.64
CHD3-213ENST00000571249 SLC35B3Q9H1N7 401 aa4.83□□□□□ -1.64
CHD3-213ENST00000571249 VSIRQ9H7M9 311 aa4.83□□□□□ -1.64
CHD3-213ENST00000571249 NPVFQ9HCQ7 196 aa4.83□□□□□ -1.64
CHD3-213ENST00000571249 ENY2Q9NPA8 101 aa4.83□□□□□ -1.64
CHD3-213ENST00000571249 KCNIP2Q9NS61 270 aa4.83□□□□□ -1.64
CHD3-213ENST00000571249 IGHV3-35A0A0C4DH35 117 aa4.82□□□□□ -1.64
CHD3-213ENST00000571249 A0A0U1RRA0 63 aa4.82□□□□□ -1.64
CHD3-213ENST00000571249 DNASE2O00115 360 aaPredicted RBP4.82□□□□□ -1.64
CHD3-213ENST00000571249 AGPAT2O15120 278 aa4.82□□□□□ -1.64
CHD3-213ENST00000571249 CYB5BO43169 146 aa4.82□□□□□ -1.64
CHD3-213ENST00000571249 SCO1O75880 301 aa4.82□□□□□ -1.64
CHD3-213ENST00000571249 RPL29P47914 159 aaKnown RBP4.82□□□□□ -1.64
CHD3-213ENST00000571249 LINC00310P59036 64 aa4.82□□□□□ -1.64
CHD3-213ENST00000571249 ERHP84090 104 aaKnown RBP4.82□□□□□ -1.64
CHD3-213ENST00000571249 PRSS8Q16651 343 aa4.82□□□□□ -1.64
CHD3-213ENST00000571249 SPINK9Q5DT21 86 aa4.82□□□□□ -1.64
CHD3-213ENST00000571249 SSX7Q7RTT5 188 aa4.82□□□□□ -1.64
CHD3-213ENST00000571249 TMEM144Q7Z5S9 345 aa4.82□□□□□ -1.64
CHD3-213ENST00000571249 MMD2Q8IY49 270 aa4.82□□□□□ -1.64
CHD3-213ENST00000571249 ZNF709Q8N972 641 aa4.82□□□□□ -1.64
CHD3-213ENST00000571249 ZNF114Q8NC26 417 aa4.82□□□□□ -1.64
CHD3-213ENST00000571249 RNASEH2CQ8TDP1 164 aaKnown RBP4.82□□□□□ -1.64
CHD3-213ENST00000571249 NARS2Q96I59 477 aaKnown RBP4.82□□□□□ -1.64
CHD3-213ENST00000571249 MGST2Q99735 147 aa4.82□□□□□ -1.64
CHD3-213ENST00000571249 NKX6-2Q9C056 277 aaPredicted RBP4.82□□□□□ -1.64
CHD3-213ENST00000571249 ACTR3CQ9C0K3 210 aaPredicted RBP4.82□□□□□ -1.64
CHD3-213ENST00000571249 COMMD5Q9GZQ3 224 aa4.82□□□□□ -1.64
CHD3-213ENST00000571249 ZNF430Q9H8G1 570 aaPredicted RBP4.82□□□□□ -1.64
CHD3-213ENST00000571249 SLC39A9Q9NUM3 307 aa4.82□□□□□ -1.64
CHD3-213ENST00000571249 CLEC5AQ9NY25 188 aa4.82□□□□□ -1.64
CHD3-213ENST00000571249 PAM16Q9Y3D7 125 aa4.82□□□□□ -1.64
CHD3-213ENST00000571249 MAP1LC3B2A6NCE7 125 aa4.81□□□□□ -1.64
CHD3-213ENST00000571249 KRTAP9-7A8MTY7 169 aa4.81□□□□□ -1.64
CHD3-213ENST00000571249 YIF1AO95070 293 aa4.81□□□□□ -1.64
CHD3-213ENST00000571249 CRYGCP07315 174 aa4.81□□□□□ -1.64
CHD3-213ENST00000571249 SPART-AS1P0CW21 52 aa4.81□□□□□ -1.64
CHD3-213ENST00000571249 BCL2P10415 239 aa4.81□□□□□ -1.64
CHD3-213ENST00000571249 PPT1P50897 306 aa4.81□□□□□ -1.64
CHD3-213ENST00000571249 WT1-ASQ06250 92 aa4.81□□□□□ -1.64
CHD3-213ENST00000571249 BTN1A1Q13410 526 aa4.81□□□□□ -1.64
CHD3-213ENST00000571249 ACOT6Q3I5F7 207 aaPredicted RBP4.81□□□□□ -1.64
CHD3-213ENST00000571249 FFAR4Q5NUL3 377 aa4.81□□□□□ -1.64
CHD3-213ENST00000571249 C19orf35Q6ZS72 473 aa4.81□□□□□ -1.64
CHD3-213ENST00000571249 THAP8Q8NA92 274 aa4.81□□□□□ -1.64
CHD3-213ENST00000571249 OR10G9Q8NGN4 311 aa4.81□□□□□ -1.64
CHD3-213ENST00000571249 OR10G7Q8NGN6 311 aa4.81□□□□□ -1.64
CHD3-213ENST00000571249 SUN5Q8TC36 379 aa4.81□□□□□ -1.64
CHD3-213ENST00000571249 MAP1LC3BQ9GZQ8 125 aa4.81□□□□□ -1.64
CHD3-213ENST00000571249 EIF5A2Q9GZV4 153 aaKnown RBP4.81□□□□□ -1.64
CHD3-213ENST00000571249 AAMDCQ9H7C9 122 aa4.81□□□□□ -1.64
CHD3-213ENST00000571249 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.81□□□□□ -1.64
CHD3-213ENST00000571249 IGKV3-7A0A075B6H7 116 aa4.8□□□□□ -1.64
CHD3-213ENST00000571249 IGLC7A0M8Q6 106 aa4.8□□□□□ -1.64
CHD3-213ENST00000571249 E7EUB6 86 aa4.8□□□□□ -1.64
CHD3-213ENST00000571249 TMEM250H0YL14 139 aa4.8□□□□□ -1.64
CHD3-213ENST00000571249 IFNA1P01562 189 aa4.8□□□□□ -1.64
CHD3-213ENST00000571249 LINC00869P0C866 280 aa4.8□□□□□ -1.64
CHD3-213ENST00000571249 STAG3L2P0CL84 134 aa4.8□□□□□ -1.64
CHD3-213ENST00000571249 STAG3L3P0CL85 134 aa4.8□□□□□ -1.64
CHD3-213ENST00000571249 CDC34P49427 236 aaPredicted RBP4.8□□□□□ -1.64
CHD3-213ENST00000571249 PSMB3P49720 205 aa4.8□□□□□ -1.64
CHD3-213ENST00000571249 SUB1P53999 127 aaKnown RBP eCLIP4.8□□□□□ -1.64
CHD3-213ENST00000571249 EMP1P54849 157 aa4.8□□□□□ -1.64
CHD3-213ENST00000571249 KRTAP10-4P60372 401 aaPredicted RBP4.8□□□□□ -1.64
CHD3-213ENST00000571249 RAB31Q13636 194 aa4.8□□□□□ -1.64
CHD3-213ENST00000571249 TNXAQ16473 311 aa4.8□□□□□ -1.64
CHD3-213ENST00000571249 LEMD1Q68G75 181 aa4.8□□□□□ -1.64
CHD3-213ENST00000571249 FAM159AQ6UWV7 190 aa4.8□□□□□ -1.64
CHD3-213ENST00000571249 TTC9CQ8N5M4 171 aa4.8□□□□□ -1.64
CHD3-213ENST00000571249 OR10W1Q8NGF6 305 aa4.8□□□□□ -1.64
CHD3-213ENST00000571249 SRSF12Q8WXF0 261 aaKnown RBP4.8□□□□□ -1.64
CHD3-213ENST00000571249 EEF1AKMT3Q96AZ1 226 aa4.8□□□□□ -1.64
CHD3-213ENST00000571249 SLC35E1Q96K37 410 aa4.8□□□□□ -1.64
CHD3-213ENST00000571249 TXNDC17Q9BRA2 123 aa4.8□□□□□ -1.64
CHD3-213ENST00000571249 MANBALQ9NQG1 85 aa4.8□□□□□ -1.64
CHD3-213ENST00000571249 VAX2Q9UIW0 290 aa4.8□□□□□ -1.64
CHD3-213ENST00000571249 CHTOPQ9Y3Y2 248 aaKnown RBP4.8□□□□□ -1.64
CHD3-213ENST00000571249 LINC00588Q9Y4M8 146 aa4.8□□□□□ -1.64
CHD3-213ENST00000571249 PXMP4Q9Y6I8 212 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms