RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 ACOT7LQ6ZUV0 252 aa11.77□□□□□ -0.53
CLK3-227ENST00000570296 MARCH1Q8TCQ1 289 aa11.77□□□□□ -0.53
CLK3-227ENST00000570296 DEDD2Q8WXF8 326 aa11.77□□□□□ -0.53
CLK3-227ENST00000570296 MCUBQ9NWR8 336 aa11.77□□□□□ -0.53
CLK3-227ENST00000570296 RNF24Q9Y225 148 aa11.77□□□□□ -0.53
CLK3-227ENST00000570296 PLP1P60201 277 aa11.76□□□□□ -0.53
CLK3-227ENST00000570296 PRRT1Q99946 306 aa11.76□□□□□ -0.53
CLK3-227ENST00000570296 SCP2D1Q9UJQ7 156 aa11.76□□□□□ -0.53
CLK3-227ENST00000570296 C14orf166Q9Y224 244 aaKnown RBP11.76□□□□□ -0.53
CLK3-227ENST00000570296 CENPXA8MT69 81 aa11.75□□□□□ -0.53
CLK3-227ENST00000570296 CCNKO75909 580 aa11.75□□□□□ -0.53
CLK3-227ENST00000570296 IGHV3-30P01768 117 aa11.75□□□□□ -0.53
CLK3-227ENST00000570296 IGHV3-33P01772 117 aa11.75□□□□□ -0.53
CLK3-227ENST00000570296 IGHV3-30-3P0DP02 117 aa11.75□□□□□ -0.53
CLK3-227ENST00000570296 IGHV3-30-5P0DP03 117 aa11.75□□□□□ -0.53
CLK3-227ENST00000570296 C4orf46Q504U0 113 aa11.75□□□□□ -0.53
CLK3-227ENST00000570296 Q8N976 141 aa11.75□□□□□ -0.53
CLK3-227ENST00000570296 TRIM63Q969Q1 353 aa11.75□□□□□ -0.53
CLK3-227ENST00000570296 ZNF479Q96JC4 524 aa11.75□□□□□ -0.53
CLK3-227ENST00000570296 RTBDNQ9BSG5 229 aaPredicted RBP11.75□□□□□ -0.53
CLK3-227ENST00000570296 CCDC32Q9BV29 185 aa11.75□□□□□ -0.53
CLK3-227ENST00000570296 PAIP2BQ9ULR5 123 aaKnown RBP11.75□□□□□ -0.53
CLK3-227ENST00000570296 KLLNB2CW77 178 aa11.74□□□□□ -0.53
CLK3-227ENST00000570296 PRSS46E5RG02 174 aa11.74□□□□□ -0.53
CLK3-227ENST00000570296 MPDU1O75352 247 aa11.74□□□□□ -0.53
CLK3-227ENST00000570296 OR5G3P0C626 314 aa11.74□□□□□ -0.53
CLK3-227ENST00000570296 SFTA3P0C7M3 94 aa11.74□□□□□ -0.53
CLK3-227ENST00000570296 AKR1C4P17516 323 aa11.74□□□□□ -0.53
CLK3-227ENST00000570296 ANXA7P20073 488 aaKnown RBP11.74□□□□□ -0.53
CLK3-227ENST00000570296 AKR1C1Q04828 323 aa11.74□□□□□ -0.53
CLK3-227ENST00000570296 BAK1Q16611 211 aa11.74□□□□□ -0.53
CLK3-227ENST00000570296 OR4D10Q8NGI6 311 aa11.74□□□□□ -0.53
CLK3-227ENST00000570296 OR10G4Q8NGN3 311 aa11.74□□□□□ -0.53
CLK3-227ENST00000570296 MUC2Q02817 5179 aa11.73□□□□□ -0.53
CLK3-227ENST00000570296 TRAV8-3A0A0A6YYJ7 113 aa11.73□□□□□ -0.53
CLK3-227ENST00000570296 NAP1L6A6NFF2 107 aa11.73□□□□□ -0.53
CLK3-227ENST00000570296 IL5P05113 134 aa11.73□□□□□ -0.53
CLK3-227ENST00000570296 IL7P13232 177 aa11.73□□□□□ -0.53
CLK3-227ENST00000570296 OR10J3Q5JRS4 329 aa11.73□□□□□ -0.53
CLK3-227ENST00000570296 FAAP20Q6NZ36 180 aa11.73□□□□□ -0.53
CLK3-227ENST00000570296 CYP2G1PQ6ZSU1 146 aa11.73□□□□□ -0.53
CLK3-227ENST00000570296 BAALCQ8WXS3 180 aa11.73□□□□□ -0.53
CLK3-227ENST00000570296 SCGB3A2Q96PL1 93 aa11.73□□□□□ -0.53
CLK3-227ENST00000570296 TP53TG3Q9ULZ0 132 aa11.73□□□□□ -0.53
CLK3-227ENST00000570296 PXMP4Q9Y6I8 212 aa11.73□□□□□ -0.53
CLK3-227ENST00000570296 LINC00869P0C866 280 aa11.72□□□□□ -0.53
CLK3-227ENST00000570296 BTN1A1Q13410 526 aa11.72□□□□□ -0.53
CLK3-227ENST00000570296 NHLRC2Q8NBF2 726 aa11.72□□□□□ -0.53
CLK3-227ENST00000570296 OR51S1Q8NGJ8 323 aa11.72□□□□□ -0.53
CLK3-227ENST00000570296 SDHCQ99643 169 aaPredicted RBP11.72□□□□□ -0.53
CLK3-227ENST00000570296 COX11Q9Y6N1 276 aa11.72□□□□□ -0.53
CLK3-227ENST00000570296 A0A0B4J2A0 478 aa11.71□□□□□ -0.53
CLK3-227ENST00000570296 RNF222A6NCQ9 220 aa11.71□□□□□ -0.53
CLK3-227ENST00000570296 SLC17A3O00476 420 aa11.71□□□□□ -0.53
CLK3-227ENST00000570296 RGS13O14921 159 aa11.71□□□□□ -0.53
CLK3-227ENST00000570296 CD300CQ08708 224 aa11.71□□□□□ -0.53
CLK3-227ENST00000570296 SURF2Q15527 256 aaPredicted RBP11.71□□□□□ -0.53
CLK3-227ENST00000570296 LELP1Q5T871 98 aa11.71□□□□□ -0.53
CLK3-227ENST00000570296 ATP6V0E2Q8NHE4 81 aa11.71□□□□□ -0.53
CLK3-227ENST00000570296 ARPC5LQ9BPX5 153 aa11.71□□□□□ -0.53
CLK3-227ENST00000570296 SHPKQ9UHJ6 478 aa11.71□□□□□ -0.53
CLK3-227ENST00000570296 IAPPP10997 89 aa11.7□□□□□ -0.54
CLK3-227ENST00000570296 SELENOTP62341 195 aa11.7□□□□□ -0.54
CLK3-227ENST00000570296 RPP30P78346 268 aaKnown RBP11.7□□□□□ -0.54
CLK3-227ENST00000570296 OR10P1Q8NGE3 313 aa11.7□□□□□ -0.54
CLK3-227ENST00000570296 LOC100131303A0A0U1RQF7 123 aa11.69□□□□□ -0.54
CLK3-227ENST00000570296 SNRPCP09234 159 aaKnown RBP11.69□□□□□ -0.54
CLK3-227ENST00000570296 RNASE4P34096 147 aaKnown RBP11.69□□□□□ -0.54
CLK3-227ENST00000570296 HSD17B11Q8NBQ5 300 aa11.69□□□□□ -0.54
CLK3-227ENST00000570296 FAM19A4Q96LR4 140 aa11.69□□□□□ -0.54
CLK3-227ENST00000570296 SLC25A21Q9BQT8 299 aaPredicted RBP11.69□□□□□ -0.54
CLK3-227ENST00000570296 LPAP08519 4548 aa11.68□□□□□ -0.54
CLK3-227ENST00000570296 IGHV1OR15-1A0A075B7D0 117 aa11.68□□□□□ -0.54
CLK3-227ENST00000570296 UPK1BO75841 260 aa11.68□□□□□ -0.54
CLK3-227ENST00000570296 TOR2AQ5JU69 321 aa11.68□□□□□ -0.54
CLK3-227ENST00000570296 MZT2BQ6NZ67 158 aa11.68□□□□□ -0.54
CLK3-227ENST00000570296 LYZL2Q7Z4W2 148 aa11.68□□□□□ -0.54
CLK3-227ENST00000570296 BPIFA4PQ86YQ2 179 aa11.68□□□□□ -0.54
CLK3-227ENST00000570296 RASL10AQ92737 203 aa11.68□□□□□ -0.54
CLK3-227ENST00000570296 CIB3Q96Q77 187 aaPredicted RBP11.68□□□□□ -0.54
CLK3-227ENST00000570296 ARV1Q9H2C2 271 aa11.68□□□□□ -0.54
CLK3-227ENST00000570296 DPH3P1Q9H4G8 78 aa11.68□□□□□ -0.54
CLK3-227ENST00000570296 RPH3ALQ9UNE2 315 aa11.68□□□□□ -0.54
CLK3-227ENST00000570296 KCNIP3Q9Y2W7 256 aa11.68□□□□□ -0.54
CLK3-227ENST00000570296 LYRM1O43325 122 aa11.67□□□□□ -0.54
CLK3-227ENST00000570296 PFN1P07737 140 aaKnown RBP11.67□□□□□ -0.54
CLK3-227ENST00000570296 OR4E1P0C645 316 aa11.67□□□□□ -0.54
CLK3-227ENST00000570296 OPCMLQ14982 345 aa11.67□□□□□ -0.54
CLK3-227ENST00000570296 PATE2Q6UY27 113 aa11.67□□□□□ -0.54
CLK3-227ENST00000570296 ARL6Q9H0F7 186 aa11.67□□□□□ -0.54
CLK3-227ENST00000570296 PRR13Q9NZ81 148 aa11.67□□□□□ -0.54
CLK3-227ENST00000570296 H3BTX0 84 aa11.66□□□□□ -0.54
CLK3-227ENST00000570296 PITX3O75364 302 aa11.66□□□□□ -0.54
CLK3-227ENST00000570296 NMBP08949 121 aa11.66□□□□□ -0.54
CLK3-227ENST00000570296 CRISP2P16562 243 aa11.66□□□□□ -0.54
CLK3-227ENST00000570296 DEFA1P59665 94 aa11.66□□□□□ -0.54
CLK3-227ENST00000570296 DEFA3P59666 94 aa11.66□□□□□ -0.54
CLK3-227ENST00000570296 SAT2Q96F10 170 aaPredicted RBP11.66□□□□□ -0.54
CLK3-227ENST00000570296 GPR132Q9UNW8 380 aa11.66□□□□□ -0.54
CLK3-227ENST00000570296 TRAV4A0A0B4J268 109 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 228.2 ms