RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 SHANK2-AS3Q9BTD1 123 aa9.08□□□□□ -0.96
CLN3-238ENST00000569430 TNFRSF6BO95407 300 aa9.07□□□□□ -0.96
CLN3-238ENST00000569430 FAM74A4Q5TZK3 123 aa9.07□□□□□ -0.96
CLN3-238ENST00000569430 ARPC1AQ92747 370 aa9.07□□□□□ -0.96
CLN3-238ENST00000569430 VWC2LB2RUY7 222 aa9.07□□□□□ -0.96
CLN3-238ENST00000569430 EMP1P54849 157 aa9.07□□□□□ -0.96
CLN3-238ENST00000569430 THAP8Q8NA92 274 aa9.07□□□□□ -0.96
CLN3-238ENST00000569430 METTL26Q96S19 204 aa9.07□□□□□ -0.96
CLN3-238ENST00000569430 COL12A1Q99715 3063 aa9.07□□□□□ -0.96
CLN3-238ENST00000569430 ANKRD11Q6UB99 2663 aaPredicted RBP9.07□□□□□ -0.96
CLN3-238ENST00000569430 A0A1B0GXF2 115 aa9.07□□□□□ -0.96
CLN3-238ENST00000569430 ZNF815PA8K554 130 aa9.07□□□□□ -0.96
CLN3-238ENST00000569430 ZNF883P0CG24 379 aa9.06□□□□□ -0.96
CLN3-238ENST00000569430 GATA1P15976 413 aaPredicted RBP9.06□□□□□ -0.96
CLN3-238ENST00000569430 ADIPOQQ15848 244 aa9.06□□□□□ -0.96
CLN3-238ENST00000569430 CLEC19AQ6UXS0 136 aa9.06□□□□□ -0.96
CLN3-238ENST00000569430 MSRB1Q9NZV6 116 aa9.06□□□□□ -0.96
CLN3-238ENST00000569430 TNRC6AQ8NDV7 1962 aaKnown RBP9.06□□□□□ -0.96
CLN3-238ENST00000569430 EXPH5Q8NEV8 1989 aa9.06□□□□□ -0.96
CLN3-238ENST00000569430 OTOGLQ3ZCN5 2332 aa9.06□□□□□ -0.96
CLN3-238ENST00000569430 MUC6Q6W4X9 2439 aa9.06□□□□□ -0.96
CLN3-238ENST00000569430 LY6HO94772 140 aa9.06□□□□□ -0.96
CLN3-238ENST00000569430 CCDC144NLQ6NUI1 221 aa9.06□□□□□ -0.96
CLN3-238ENST00000569430 GLMPQ8WWB7 406 aa9.06□□□□□ -0.96
CLN3-238ENST00000569430 AKAP13Q12802 2813 aa9.06□□□□□ -0.96
CLN3-238ENST00000569430 MAP1AP78559 2803 aaPredicted RBP9.06□□□□□ -0.96
CLN3-238ENST00000569430 A0A1W2PNU3 283 aaPredicted RBP9.06□□□□□ -0.96
CLN3-238ENST00000569430 NPIPB6E9PJ23 425 aa9.06□□□□□ -0.96
CLN3-238ENST00000569430 GP9P14770 177 aa9.06□□□□□ -0.96
CLN3-238ENST00000569430 FXYD2P54710 66 aa9.06□□□□□ -0.96
CLN3-238ENST00000569430 VGLL1Q99990 258 aa9.06□□□□□ -0.96
CLN3-238ENST00000569430 PGPEP1Q9NXJ5 209 aa9.06□□□□□ -0.96
CLN3-238ENST00000569430 NDUFS8O00217 210 aa9.05□□□□□ -0.96
CLN3-238ENST00000569430 SRSF1Q07955 248 aaKnown RBP eCLIP9.05□□□□□ -0.96
CLN3-238ENST00000569430 KLRD1Q13241 179 aa9.05□□□□□ -0.96
CLN3-238ENST00000569430 MRPL35Q9NZE8 188 aaKnown RBP9.05□□□□□ -0.96
CLN3-238ENST00000569430 TRAV26-2A0A0B4J265 109 aa9.05□□□□□ -0.96
CLN3-238ENST00000569430 GAGE12HA6NDE8 117 aa9.05□□□□□ -0.96
CLN3-238ENST00000569430 HLA-DMBP28068 263 aa9.05□□□□□ -0.96
CLN3-238ENST00000569430 WFDC2Q14508 124 aa9.05□□□□□ -0.96
CLN3-238ENST00000569430 LAGE3Q14657 143 aa9.05□□□□□ -0.96
CLN3-238ENST00000569430 NPFFR1Q9GZQ6 430 aa9.05□□□□□ -0.96
CLN3-238ENST00000569430 UBTD1Q9HAC8 227 aa9.05□□□□□ -0.96
CLN3-238ENST00000569430 CHTOPQ9Y3Y2 248 aaKnown RBP9.05□□□□□ -0.96
CLN3-238ENST00000569430 ATRXP46100 2492 aa9.05□□□□□ -0.96
CLN3-238ENST00000569430 IGKV1D-37A0A075B6S9 117 aa9.05□□□□□ -0.96
CLN3-238ENST00000569430 PSMG4Q5JS54 123 aa9.05□□□□□ -0.96
CLN3-238ENST00000569430 RNF182Q8N6D2 247 aa9.05□□□□□ -0.96
CLN3-238ENST00000569430 OR10J6PQ8NGY7 276 aa9.05□□□□□ -0.96
CLN3-238ENST00000569430 KLF12Q9Y4X4 402 aa9.05□□□□□ -0.96
CLN3-238ENST00000569430 BUB1B-PAK6H3BSN5 160 aa9.04□□□□□ -0.96
CLN3-238ENST00000569430 GATA4P43694 442 aa9.04□□□□□ -0.96
CLN3-238ENST00000569430 EFNA4P52798 201 aa9.04□□□□□ -0.96
CLN3-238ENST00000569430 LHBP01229 141 aa9.04□□□□□ -0.96
CLN3-238ENST00000569430 IGKV3-20P01619 116 aa9.04□□□□□ -0.96
CLN3-238ENST00000569430 LOXP28300 417 aaPredicted RBP9.04□□□□□ -0.96
CLN3-238ENST00000569430 PRR25Q96S07 402 aa9.04□□□□□ -0.96
CLN3-238ENST00000569430 WNK1Q9H4A3 2382 aa9.04□□□□□ -0.96
CLN3-238ENST00000569430 PSMB11A5LHX3 300 aa9.03□□□□□ -0.96
CLN3-238ENST00000569430 MBD3L4A6NDZ8 208 aaPredicted RBP9.03□□□□□ -0.96
CLN3-238ENST00000569430 MBD3L3A6NE82 208 aaPredicted RBP9.03□□□□□ -0.96
CLN3-238ENST00000569430 MBD3L5A6NJ08 208 aaPredicted RBP9.03□□□□□ -0.96
CLN3-238ENST00000569430 LGALS3P17931 250 aaKnown RBP9.03□□□□□ -0.96
CLN3-238ENST00000569430 APOBEC3AP31941 199 aaPredicted RBP9.03□□□□□ -0.96
CLN3-238ENST00000569430 LYPD1Q8N2G4 141 aa9.03□□□□□ -0.96
CLN3-238ENST00000569430 MBD3L2Q8NHZ7 208 aaPredicted RBP9.03□□□□□ -0.96
CLN3-238ENST00000569430 LINC00527Q9UJ94 153 aa9.03□□□□□ -0.96
CLN3-238ENST00000569430 NACAE9PAV3 2078 aa9.03□□□□□ -0.96
CLN3-238ENST00000569430 IGLV3-9A0A075B6K5 115 aa9.03□□□□□ -0.96
CLN3-238ENST00000569430 IGHV3OR16-10A0A075B7F0 116 aa9.03□□□□□ -0.96
CLN3-238ENST00000569430 C19orf71A6NCJ1 209 aa9.03□□□□□ -0.96
CLN3-238ENST00000569430 EGR2P11161 476 aaPredicted RBP9.03□□□□□ -0.96
CLN3-238ENST00000569430 TTC32Q5I0X7 151 aa9.03□□□□□ -0.96
CLN3-238ENST00000569430 SMPXQ9UHP9 88 aa9.03□□□□□ -0.96
CLN3-238ENST00000569430 TRBV25-1A0A075B6N4 114 aa9.03□□□□□ -0.96
CLN3-238ENST00000569430 IGKV1-17P01599 117 aa9.03□□□□□ -0.96
CLN3-238ENST00000569430 SPINK8P0C7L1 97 aa9.03□□□□□ -0.96
CLN3-238ENST00000569430 NCOR1P1Q9H4R4 102 aa9.03□□□□□ -0.96
CLN3-238ENST00000569430 TET2Q6N021 2002 aaPredicted RBP9.02□□□□□ -0.96
CLN3-238ENST00000569430 TRAV8-2A0A0B4J237 113 aa9.02□□□□□ -0.97
CLN3-238ENST00000569430 ZZEF1O43149 2961 aa9.02□□□□□ -0.97
CLN3-238ENST00000569430 SPRY2O43597 315 aa9.02□□□□□ -0.97
CLN3-238ENST00000569430 CGB3P0DN86 165 aa9.02□□□□□ -0.97
CLN3-238ENST00000569430 CGB7P0DN87 165 aa9.02□□□□□ -0.97
CLN3-238ENST00000569430 RPL13AP40429 203 aaKnown RBP9.02□□□□□ -0.97
CLN3-238ENST00000569430 URB1-AS1Q96HZ7 61 aa9.02□□□□□ -0.97
CLN3-238ENST00000569430 PRSS22Q9GZN4 317 aa9.02□□□□□ -0.97
CLN3-238ENST00000569430 ARHGAP32A7KAX9 2087 aa9.02□□□□□ -0.97
CLN3-238ENST00000569430 DSCAMO60469 2012 aa9.02□□□□□ -0.97
CLN3-238ENST00000569430 B9A039 149 aa9.02□□□□□ -0.97
CLN3-238ENST00000569430 G3V4G9 280 aa9.02□□□□□ -0.97
CLN3-238ENST00000569430 TMEM155Q4W5P6 130 aa9.02□□□□□ -0.97
CLN3-238ENST00000569430 BOD1L2Q8IYS8 172 aa9.02□□□□□ -0.97
CLN3-238ENST00000569430 ZNF491Q8N8L2 437 aa9.02□□□□□ -0.97
CLN3-238ENST00000569430 MLST8Q9BVC4 326 aa9.02□□□□□ -0.97
CLN3-238ENST00000569430 ZNF256Q9Y2P7 627 aaPredicted RBP9.02□□□□□ -0.97
CLN3-238ENST00000569430 IGHV3-64A0A075B6Q5 118 aa9.02□□□□□ -0.97
CLN3-238ENST00000569430 PRTN3P24158 256 aa9.02□□□□□ -0.97
CLN3-238ENST00000569430 NDPQ00604 133 aa9.02□□□□□ -0.97
CLN3-238ENST00000569430 FAM57AQ8TBR7 257 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms