RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 RBFOX2O43251 390 aaKnown RBP eCLIP8.07□□□□□ -1.12
CDH3-208ENST00000569036 TNFSF12O43508 249 aa8.07□□□□□ -1.12
CDH3-208ENST00000569036 STAG3L2P0CL84 134 aa8.07□□□□□ -1.12
CDH3-208ENST00000569036 STAG3L3P0CL85 134 aa8.07□□□□□ -1.12
CDH3-208ENST00000569036 APELAP0DMC3 54 aa8.07□□□□□ -1.12
CDH3-208ENST00000569036 CRISP2P16562 243 aa8.07□□□□□ -1.12
CDH3-208ENST00000569036 ATP5IP56385 69 aaPredicted RBP8.07□□□□□ -1.12
CDH3-208ENST00000569036 ATP5G2Q06055 141 aa8.07□□□□□ -1.12
CDH3-208ENST00000569036 RASL11AQ6T310 242 aa8.07□□□□□ -1.12
CDH3-208ENST00000569036 GPHB5Q86YW7 130 aa8.07□□□□□ -1.12
CDH3-208ENST00000569036 ARL6IP6Q8N6S5 226 aa8.07□□□□□ -1.12
CDH3-208ENST00000569036 NECAP1Q8NC96 275 aa8.07□□□□□ -1.12
CDH3-208ENST00000569036 OR2D3Q8NGH3 330 aa8.07□□□□□ -1.12
CDH3-208ENST00000569036 OR10G8Q8NGN5 311 aa8.07□□□□□ -1.12
CDH3-208ENST00000569036 UHRF2Q96PU4 802 aa8.07□□□□□ -1.12
CDH3-208ENST00000569036 TMEM208Q9BTX3 173 aa8.07□□□□□ -1.12
CDH3-208ENST00000569036 RAB9BQ9NP90 201 aa8.07□□□□□ -1.12
CDH3-208ENST00000569036 ZFP30Q9Y2G7 519 aa8.07□□□□□ -1.12
CDH3-208ENST00000569036 A0A1W2PPV4 95 aa8.06□□□□□ -1.12
CDH3-208ENST00000569036 ZNF705FA8MVS1 300 aaPredicted RBP8.06□□□□□ -1.12
CDH3-208ENST00000569036 IL6RP08887 468 aaPredicted RBP8.06□□□□□ -1.12
CDH3-208ENST00000569036 OR5G3P0C626 314 aa8.06□□□□□ -1.12
CDH3-208ENST00000569036 ZNF705DP0CH99 300 aaPredicted RBP8.06□□□□□ -1.12
CDH3-208ENST00000569036 ZNF705BP0CI00 300 aaPredicted RBP8.06□□□□□ -1.12
CDH3-208ENST00000569036 CT45A6P0DMU7 189 aa8.06□□□□□ -1.12
CDH3-208ENST00000569036 CT45A5P0DMU8 189 aa8.06□□□□□ -1.12
CDH3-208ENST00000569036 CT45A7P0DMV0 189 aa8.06□□□□□ -1.12
CDH3-208ENST00000569036 DMRTA1Q5VZB9 504 aa8.06□□□□□ -1.12
CDH3-208ENST00000569036 OR8G2PQ6IF36 304 aa8.06□□□□□ -1.12
CDH3-208ENST00000569036 APRG1Q8IVJ8 170 aa8.06□□□□□ -1.12
CDH3-208ENST00000569036 TMEM190Q8WZ59 177 aa8.06□□□□□ -1.12
CDH3-208ENST00000569036 RNF5Q99942 180 aa8.06□□□□□ -1.12
CDH3-208ENST00000569036 TRAPPC2LQ9UL33 140 aa8.06□□□□□ -1.12
CDH3-208ENST00000569036 SLC45A2Q9UMX9 530 aa8.06□□□□□ -1.12
CDH3-208ENST00000569036 WASHC3Q9Y3C0 194 aa8.06□□□□□ -1.12
CDH3-208ENST00000569036 KRTAP29-1A8MX34 341 aaPredicted RBP8.05□□□□□ -1.12
CDH3-208ENST00000569036 CA1P00915 261 aaPredicted RBP8.05□□□□□ -1.12
CDH3-208ENST00000569036 C8orf88P0DMB2 117 aa8.05□□□□□ -1.12
CDH3-208ENST00000569036 MC5RP33032 325 aa8.05□□□□□ -1.12
CDH3-208ENST00000569036 RPS20P60866 119 aaKnown RBP8.05□□□□□ -1.12
CDH3-208ENST00000569036 RAB31Q13636 194 aa8.05□□□□□ -1.12
CDH3-208ENST00000569036 C12orf74Q32Q52 190 aa8.05□□□□□ -1.12
CDH3-208ENST00000569036 FAM162BQ5T6X4 162 aa8.05□□□□□ -1.12
CDH3-208ENST00000569036 FAM71F2Q6NXP2 309 aa8.05□□□□□ -1.12
CDH3-208ENST00000569036 C19orf35Q6ZS72 473 aa8.05□□□□□ -1.12
CDH3-208ENST00000569036 H2BFWTQ7Z2G1 175 aa8.05□□□□□ -1.12
CDH3-208ENST00000569036 OR52L2PQ8NGH6 319 aa8.05□□□□□ -1.12
CDH3-208ENST00000569036 ORAOV1Q8WV07 137 aa8.05□□□□□ -1.12
CDH3-208ENST00000569036 GALMQ96C23 342 aa8.05□□□□□ -1.12
CDH3-208ENST00000569036 QTRT1Q9BXR0 403 aaKnown RBP8.05□□□□□ -1.12
CDH3-208ENST00000569036 IFI27L2Q9H2X8 130 aa8.05□□□□□ -1.12
CDH3-208ENST00000569036 OR1A1Q9P1Q5 309 aa8.05□□□□□ -1.12
CDH3-208ENST00000569036 UQCR10Q9UDW1 63 aa8.05□□□□□ -1.12
CDH3-208ENST00000569036 CELA1Q9UNI1 258 aa8.05□□□□□ -1.12
CDH3-208ENST00000569036 NXPH3O95157 252 aa8.04□□□□□ -1.12
CDH3-208ENST00000569036 HLA-DQA1P01909 254 aa8.04□□□□□ -1.12
CDH3-208ENST00000569036 OR9G9P0C7N8 305 aa8.04□□□□□ -1.12
CDH3-208ENST00000569036 RPL29P47914 159 aaKnown RBP8.04□□□□□ -1.12
CDH3-208ENST00000569036 RHOBP62745 196 aa8.04□□□□□ -1.12
CDH3-208ENST00000569036 PMCHL1Q16048 86 aa8.04□□□□□ -1.12
CDH3-208ENST00000569036 RPL39P5Q59GN2 51 aa8.04□□□□□ -1.12
CDH3-208ENST00000569036 OR4A47Q6IF82 309 aa8.04□□□□□ -1.12
CDH3-208ENST00000569036 ZNF705AQ6ZN79 300 aaPredicted RBP8.04□□□□□ -1.12
CDH3-208ENST00000569036 OSTCQ9NRP0 149 aa8.04□□□□□ -1.12
CDH3-208ENST00000569036 TMEM167BQ9NRX6 74 aa8.04□□□□□ -1.12
CDH3-208ENST00000569036 MRPL27Q9P0M9 148 aaKnown RBP8.04□□□□□ -1.12
CDH3-208ENST00000569036 ITGB1BP1O14713 200 aa8.03□□□□□ -1.12
CDH3-208ENST00000569036 IGKV1-16P04430 117 aa8.03□□□□□ -1.12
CDH3-208ENST00000569036 NPPCP23582 126 aa8.03□□□□□ -1.12
CDH3-208ENST00000569036 HTD2P86397 168 aa8.03□□□□□ -1.12
CDH3-208ENST00000569036 ZNF90Q03938 601 aa8.03□□□□□ -1.12
CDH3-208ENST00000569036 C15orf32Q32M92 178 aa8.03□□□□□ -1.12
CDH3-208ENST00000569036 FAM106AQ4KMX7 169 aa8.03□□□□□ -1.12
CDH3-208ENST00000569036 OR5AN1Q8NGI8 311 aa8.03□□□□□ -1.12
CDH3-208ENST00000569036 IL1F10Q8WWZ1 152 aa8.03□□□□□ -1.12
CDH3-208ENST00000569036 KCNS1Q96KK3 526 aa8.03□□□□□ -1.12
CDH3-208ENST00000569036 C17orf77Q96MU5 243 aa8.03□□□□□ -1.12
CDH3-208ENST00000569036 MRPL18Q9H0U6 180 aaKnown RBP8.03□□□□□ -1.12
CDH3-208ENST00000569036 JPT1Q9UK76 154 aa8.03□□□□□ -1.12
CDH3-208ENST00000569036 MRPS16Q9Y3D3 137 aaKnown RBP8.03□□□□□ -1.12
CDH3-208ENST00000569036 LRP1Q07954 4544 aaKnown RBP8.03□□□□□ -1.12
CDH3-208ENST00000569036 C15orf62A8K5M9 175 aa8.02□□□□□ -1.13
CDH3-208ENST00000569036 ZNF253O75346 499 aa8.02□□□□□ -1.13
CDH3-208ENST00000569036 NDUFB4O95168 129 aa8.02□□□□□ -1.13
CDH3-208ENST00000569036 MIFP14174 115 aa8.02□□□□□ -1.13
CDH3-208ENST00000569036 ARL3P36405 182 aa8.02□□□□□ -1.13
CDH3-208ENST00000569036 UNQ9165/PRO28630Q6UXU0 137 aa8.02□□□□□ -1.13
CDH3-208ENST00000569036 Q6ZSN1 163 aa8.02□□□□□ -1.13
CDH3-208ENST00000569036 BAGE3Q86Y29 109 aa8.02□□□□□ -1.13
CDH3-208ENST00000569036 BAGE2Q86Y30 109 aa8.02□□□□□ -1.13
CDH3-208ENST00000569036 SLC35E1Q96K37 410 aa8.02□□□□□ -1.13
CDH3-208ENST00000569036 SAMD10Q9BYL1 202 aa8.02□□□□□ -1.13
CDH3-208ENST00000569036 COMMD5Q9GZQ3 224 aa8.02□□□□□ -1.13
CDH3-208ENST00000569036 NBDYA0A0U1RRE5 68 aa8.01□□□□□ -1.13
CDH3-208ENST00000569036 OR4C46A6NHA9 309 aa8.01□□□□□ -1.13
CDH3-208ENST00000569036 SMR3BP02814 79 aaPredicted RBP8.01□□□□□ -1.13
CDH3-208ENST00000569036 GPX1P07203 203 aa8.01□□□□□ -1.13
CDH3-208ENST00000569036 G0S2P27469 103 aa8.01□□□□□ -1.13
CDH3-208ENST00000569036 CTRLP40313 264 aa8.01□□□□□ -1.13
CDH3-208ENST00000569036 SUMO1P63165 101 aaKnown RBP8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms