RNA–Protein interactions for RNA: ENST00000568443.2

CLN3-232, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 969 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-232ENST00000568443 AGPAT4-IT1Q9H0P7 198 aa15.74■□□□□ 0.11
CLN3-232ENST00000568443 C7orf71A4D174 169 aa15.73■□□□□ 0.11
CLN3-232ENST00000568443 C17orf112F2Z3M2 114 aa15.73■□□□□ 0.11
CLN3-232ENST00000568443 SSNA1O43805 119 aa15.73■□□□□ 0.11
CLN3-232ENST00000568443 H2BFSP57053 126 aa15.73■□□□□ 0.11
CLN3-232ENST00000568443 DEFA1P59665 94 aa15.73■□□□□ 0.11
CLN3-232ENST00000568443 DEFA3P59666 94 aa15.73■□□□□ 0.11
CLN3-232ENST00000568443 C1orf134Q5TEV5 83 aa15.73■□□□□ 0.11
CLN3-232ENST00000568443 LINC00612Q8N6U2 182 aa15.73■□□□□ 0.11
CLN3-232ENST00000568443 RNF141Q8WVD5 230 aa15.73■□□□□ 0.11
CLN3-232ENST00000568443 PPP1R1CQ8WVI7 109 aa15.73■□□□□ 0.11
CLN3-232ENST00000568443 OR51M1Q9H341 326 aa15.73■□□□□ 0.11
CLN3-232ENST00000568443 MRPL32Q9BYC8 188 aaKnown RBP15.72■□□□□ 0.11
CLN3-232ENST00000568443 RNASE4P34096 147 aaKnown RBP15.71■□□□□ 0.11
CLN3-232ENST00000568443 FAM122CQ6P4D5 195 aa15.71■□□□□ 0.11
CLN3-232ENST00000568443 C9orf47Q6ZRZ4 202 aa15.71■□□□□ 0.11
CLN3-232ENST00000568443 GNPNAT1Q96EK6 184 aaPredicted RBP15.71■□□□□ 0.11
CLN3-232ENST00000568443 PAXXQ9BUH6 204 aa15.71■□□□□ 0.11
CLN3-232ENST00000568443 KIAA1109Q2LD37 5005 aa15.71■□□□□ 0.1
CLN3-232ENST00000568443 PKHD1P08F94 4074 aa15.7■□□□□ 0.1
CLN3-232ENST00000568443 KLLNB2CW77 178 aa15.7■□□□□ 0.1
CLN3-232ENST00000568443 GPX1P07203 203 aa15.7■□□□□ 0.1
CLN3-232ENST00000568443 OR10J4P0C629 311 aa15.7■□□□□ 0.1
CLN3-232ENST00000568443 PET100P0DJ07 73 aa15.7■□□□□ 0.1
CLN3-232ENST00000568443 M6PRP20645 277 aa15.7■□□□□ 0.1
CLN3-232ENST00000568443 CD300CQ08708 224 aa15.7■□□□□ 0.1
CLN3-232ENST00000568443 DAZ2Q13117 558 aaKnown RBP15.7■□□□□ 0.1
CLN3-232ENST00000568443 TMEM78Q5T7P6 136 aa15.7■□□□□ 0.1
CLN3-232ENST00000568443 FAM19A4Q96LR4 140 aa15.7■□□□□ 0.1
CLN3-232ENST00000568443 ATP5SQ99766 215 aa15.7■□□□□ 0.1
CLN3-232ENST00000568443 FUT9Q9Y231 359 aa15.7■□□□□ 0.1
CLN3-232ENST00000568443 TRAV26-1A0A087WT03 109 aa15.69■□□□□ 0.1
CLN3-232ENST00000568443 IGKV2-40A0A087WW87 121 aaPredicted RBP15.69■□□□□ 0.1
CLN3-232ENST00000568443 ZNF324O75467 553 aaPredicted RBP15.69■□□□□ 0.1
CLN3-232ENST00000568443 MPC2O95563 127 aa15.69■□□□□ 0.1
CLN3-232ENST00000568443 IGKV2D-40P01614 121 aaPredicted RBP15.69■□□□□ 0.1
CLN3-232ENST00000568443 BTN1A1Q13410 526 aa15.69■□□□□ 0.1
CLN3-232ENST00000568443 ZNRF2Q8NHG8 242 aa15.69■□□□□ 0.1
CLN3-232ENST00000568443 NMBP08949 121 aa15.68■□□□□ 0.1
CLN3-232ENST00000568443 Q6ZTI0 123 aa15.68■□□□□ 0.1
CLN3-232ENST00000568443 EIF4E3Q8N5X7 224 aaKnown RBP15.68■□□□□ 0.1
CLN3-232ENST00000568443 ZNF680Q8NEM1 530 aa15.68■□□□□ 0.1
CLN3-232ENST00000568443 SCGB1C1Q8TD33 95 aa15.68■□□□□ 0.1
CLN3-232ENST00000568443 FXYD5Q96DB9 178 aa15.68■□□□□ 0.1
CLN3-232ENST00000568443 VGLL1Q99990 258 aa15.68■□□□□ 0.1
CLN3-232ENST00000568443 LINC00467Q9BRT7 94 aa15.68■□□□□ 0.1
CLN3-232ENST00000568443 GSN-AS1Q9NRJ2 163 aa15.68■□□□□ 0.1
CLN3-232ENST00000568443 LINC00588Q9Y4M8 146 aa15.68■□□□□ 0.1
CLN3-232ENST00000568443 HSPB11Q9Y547 144 aa15.68■□□□□ 0.1
CLN3-232ENST00000568443 PKD1P98161 4303 aa15.68■□□□□ 0.1
CLN3-232ENST00000568443 A0A0J9YY99 117 aa15.67■□□□□ 0.1
CLN3-232ENST00000568443 NBDYA0A0U1RRE5 68 aa15.67■□□□□ 0.1
CLN3-232ENST00000568443 OR7C2O60412 319 aa15.67■□□□□ 0.1
CLN3-232ENST00000568443 IFNA5P01569 189 aa15.67■□□□□ 0.1
CLN3-232ENST00000568443 CRISP2P16562 243 aa15.67■□□□□ 0.1
CLN3-232ENST00000568443 HOXA5P20719 270 aa15.67■□□□□ 0.1
CLN3-232ENST00000568443 SSX7Q7RTT5 188 aa15.67■□□□□ 0.1
CLN3-232ENST00000568443 RXFP4Q8TDU9 374 aa15.67■□□□□ 0.1
CLN3-232ENST00000568443 ZNF503Q96F45 646 aa15.67■□□□□ 0.1
CLN3-232ENST00000568443 RPL12P30050 165 aaKnown RBP15.66■□□□□ 0.1
CLN3-232ENST00000568443 ANXA2RQ3ZCQ2 193 aa15.66■□□□□ 0.1
CLN3-232ENST00000568443 FFAR4Q5NUL3 377 aa15.66■□□□□ 0.1
CLN3-232ENST00000568443 ZNF492Q9P255 531 aa15.66■□□□□ 0.1
CLN3-232ENST00000568443 TRGV2A0A075B6R0 118 aa15.65■□□□□ 0.1
CLN3-232ENST00000568443 CSN1S1P47710 185 aa15.65■□□□□ 0.1
CLN3-232ENST00000568443 RANP62826 216 aaKnown RBP15.65■□□□□ 0.1
CLN3-232ENST00000568443 C11orf72Q8NBR9 251 aa15.65■□□□□ 0.1
CLN3-232ENST00000568443 PHYHIPLQ96FC7 376 aa15.65■□□□□ 0.1
CLN3-232ENST00000568443 SMIM3Q9BZL3 60 aa15.65■□□□□ 0.1
CLN3-232ENST00000568443 TMPRSS5Q9H3S3 457 aa15.65■□□□□ 0.1
CLN3-232ENST00000568443 RGS13O14921 159 aa15.64■□□□□ 0.09
CLN3-232ENST00000568443 ZNF138P52744 262 aa15.64■□□□□ 0.09
CLN3-232ENST00000568443 LYPD1Q8N2G4 141 aa15.64■□□□□ 0.09
CLN3-232ENST00000568443 ZFAND2AQ8N6M9 145 aa15.64■□□□□ 0.09
CLN3-232ENST00000568443 TRGV1A0A0A0MS02 117 aa15.63■□□□□ 0.09
CLN3-232ENST00000568443 H3BNG1 76 aa15.63■□□□□ 0.09
CLN3-232ENST00000568443 MBD2Q9UBB5 411 aa15.63■□□□□ 0.09
CLN3-232ENST00000568443 TAS2R45P59539 299 aa15.62■□□□□ 0.09
CLN3-232ENST00000568443 UBE2L3P68036 154 aaKnown RBP15.62■□□□□ 0.09
CLN3-232ENST00000568443 KHDC3LQ587J8 217 aa15.62■□□□□ 0.09
CLN3-232ENST00000568443 PRR9Q5T870 116 aa15.62■□□□□ 0.09
CLN3-232ENST00000568443 Q9H3A6 140 aa15.62■□□□□ 0.09
CLN3-232ENST00000568443 Q9H8V8 135 aa15.62■□□□□ 0.09
CLN3-232ENST00000568443 KLF12Q9Y4X4 402 aa15.62■□□□□ 0.09
CLN3-232ENST00000568443 DYNC1H1Q14204 4646 aaKnown RBP15.62■□□□□ 0.09
CLN3-232ENST00000568443 DNAH11Q96DT5 4516 aa15.62■□□□□ 0.09
CLN3-232ENST00000568443 IGHV1OR15-1A0A075B7D0 117 aa15.61■□□□□ 0.09
CLN3-232ENST00000568443 MED14OSP0DP75 135 aa15.61■□□□□ 0.09
CLN3-232ENST00000568443 TCL1AP56279 114 aa15.61■□□□□ 0.09
CLN3-232ENST00000568443 C6orf223Q8N319 242 aa15.61■□□□□ 0.09
CLN3-232ENST00000568443 Q8TAT8 98 aa15.61■□□□□ 0.09
CLN3-232ENST00000568443 C18orf15Q96N68 181 aa15.61■□□□□ 0.09
CLN3-232ENST00000568443 TRBV7-9A0A0J9YWB2 115 aa15.6■□□□□ 0.09
CLN3-232ENST00000568443 RBAKDNA6NC62 111 aa15.6■□□□□ 0.09
CLN3-232ENST00000568443 IBA57Q5T440 356 aaKnown RBP15.6■□□□□ 0.09
CLN3-232ENST00000568443 ARPC5LQ9BPX5 153 aa15.6■□□□□ 0.09
CLN3-232ENST00000568443 BATF3Q9NR55 127 aa15.6■□□□□ 0.09
CLN3-232ENST00000568443 TP53TG3Q9ULZ0 132 aa15.6■□□□□ 0.09
CLN3-232ENST00000568443 SPINK4O60575 86 aa15.59■□□□□ 0.09
CLN3-232ENST00000568443 ESRGQ1W209 222 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms