RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 C9orf47Q6ZRZ4 202 aa10.66□□□□□ -0.7
VPS39-210ENST00000568357 HSD17B11Q8NBQ5 300 aa10.66□□□□□ -0.7
VPS39-210ENST00000568357 OR2T35Q8NGX2 323 aa10.66□□□□□ -0.7
VPS39-210ENST00000568357 RNF222A6NCQ9 220 aa10.65□□□□□ -0.7
VPS39-210ENST00000568357 HTN3P15516 51 aa10.65□□□□□ -0.7
VPS39-210ENST00000568357 TAS2R45P59539 299 aa10.65□□□□□ -0.7
VPS39-210ENST00000568357 DAD1P61803 113 aa10.65□□□□□ -0.7
VPS39-210ENST00000568357 UBE2L3P68036 154 aaKnown RBP10.65□□□□□ -0.7
VPS39-210ENST00000568357 ZNF266Q14584 549 aa10.65□□□□□ -0.7
VPS39-210ENST00000568357 KHDC3LQ587J8 217 aa10.65□□□□□ -0.7
VPS39-210ENST00000568357 OR10G4Q8NGN3 311 aa10.65□□□□□ -0.7
VPS39-210ENST00000568357 OR10G9Q8NGN4 311 aa10.65□□□□□ -0.7
VPS39-210ENST00000568357 OR10G7Q8NGN6 311 aa10.65□□□□□ -0.7
VPS39-210ENST00000568357 RNASE8Q8TDE3 154 aaKnown RBP10.65□□□□□ -0.7
VPS39-210ENST00000568357 TNFSF18Q9UNG2 199 aa10.65□□□□□ -0.7
VPS39-210ENST00000568357 FXYD6-FXYD2A0A087WZ82 144 aa10.64□□□□□ -0.71
VPS39-210ENST00000568357 A0A1W2PPV4 95 aa10.64□□□□□ -0.71
VPS39-210ENST00000568357 LYRM9A8MSI8 78 aa10.64□□□□□ -0.71
VPS39-210ENST00000568357 KLLNB2CW77 178 aa10.64□□□□□ -0.71
VPS39-210ENST00000568357 HMGB3O15347 200 aaKnown RBP10.64□□□□□ -0.71
VPS39-210ENST00000568357 DEFB130BP0DP73 79 aa10.64□□□□□ -0.71
VPS39-210ENST00000568357 DEFB130AP0DP74 79 aa10.64□□□□□ -0.71
VPS39-210ENST00000568357 ATP6V0CP27449 155 aa10.64□□□□□ -0.71
VPS39-210ENST00000568357 CD300CQ08708 224 aa10.64□□□□□ -0.71
VPS39-210ENST00000568357 ZNF493Q6ZR52 646 aa10.64□□□□□ -0.71
VPS39-210ENST00000568357 LYPD1Q8N2G4 141 aa10.64□□□□□ -0.71
VPS39-210ENST00000568357 INO80EQ8NBZ0 244 aaPredicted RBP10.64□□□□□ -0.71
VPS39-210ENST00000568357 C16orf74Q96GX8 76 aa10.64□□□□□ -0.71
VPS39-210ENST00000568357 Q9H3A6 140 aa10.64□□□□□ -0.71
VPS39-210ENST00000568357 ZNF324O75467 553 aaPredicted RBP10.63□□□□□ -0.71
VPS39-210ENST00000568357 SLC25A5P05141 298 aaKnown RBP10.63□□□□□ -0.71
VPS39-210ENST00000568357 CRISP2P16562 243 aa10.63□□□□□ -0.71
VPS39-210ENST00000568357 RNASE4P34096 147 aaKnown RBP10.63□□□□□ -0.71
VPS39-210ENST00000568357 RPL7L1Q6DKI1 246 aaKnown RBP10.63□□□□□ -0.71
VPS39-210ENST00000568357 OR2G3Q8NGZ4 309 aa10.63□□□□□ -0.71
VPS39-210ENST00000568357 TMEM263Q8WUH6 116 aaKnown RBP10.63□□□□□ -0.71
VPS39-210ENST00000568357 PSMG3Q9BT73 122 aaPredicted RBP10.63□□□□□ -0.71
VPS39-210ENST00000568357 NDUFAF3Q9BU61 184 aa10.63□□□□□ -0.71
VPS39-210ENST00000568357 SH3BGRL3Q9H299 93 aa10.63□□□□□ -0.71
VPS39-210ENST00000568357 ZNF492Q9P255 531 aa10.63□□□□□ -0.71
VPS39-210ENST00000568357 C7orf71A4D174 169 aa10.62□□□□□ -0.71
VPS39-210ENST00000568357 BTN1A1Q13410 526 aa10.62□□□□□ -0.71
VPS39-210ENST00000568357 TMEM78Q5T7P6 136 aa10.62□□□□□ -0.71
VPS39-210ENST00000568357 PRR9Q5T870 116 aa10.62□□□□□ -0.71
VPS39-210ENST00000568357 PQLC2Q6ZP29 291 aa10.62□□□□□ -0.71
VPS39-210ENST00000568357 Q6ZQT7 251 aa10.62□□□□□ -0.71
VPS39-210ENST00000568357 ZFAND2AQ8N6M9 145 aa10.62□□□□□ -0.71
VPS39-210ENST00000568357 NOP10Q9NPE3 64 aaKnown RBP10.62□□□□□ -0.71
VPS39-210ENST00000568357 TIMM8BQ9Y5J9 83 aaPredicted RBP10.62□□□□□ -0.71
VPS39-210ENST00000568357 DIRC3C9JPN6 131 aa10.61□□□□□ -0.71
VPS39-210ENST00000568357 SMLR1H3BR10 107 aa10.61□□□□□ -0.71
VPS39-210ENST00000568357 GPX1P07203 203 aa10.61□□□□□ -0.71
VPS39-210ENST00000568357 NMBP08949 121 aa10.61□□□□□ -0.71
VPS39-210ENST00000568357 CSN1S1P47710 185 aa10.61□□□□□ -0.71
VPS39-210ENST00000568357 ZNF138P52744 262 aa10.61□□□□□ -0.71
VPS39-210ENST00000568357 CCDC28AQ8IWP9 274 aa10.61□□□□□ -0.71
VPS39-210ENST00000568357 Q8TAT8 98 aa10.61□□□□□ -0.71
VPS39-210ENST00000568357 RAB24Q969Q5 203 aa10.61□□□□□ -0.71
VPS39-210ENST00000568357 FAM210BQ96KR6 192 aa10.61□□□□□ -0.71
VPS39-210ENST00000568357 HYLS1Q96M11 299 aa10.61□□□□□ -0.71
VPS39-210ENST00000568357 PYGO2Q9BRQ0 406 aa10.61□□□□□ -0.71
VPS39-210ENST00000568357 PGPA6NDG6 321 aa10.6□□□□□ -0.71
VPS39-210ENST00000568357 STAG3L2P0CL84 134 aa10.6□□□□□ -0.71
VPS39-210ENST00000568357 STAG3L3P0CL85 134 aa10.6□□□□□ -0.71
VPS39-210ENST00000568357 CDC34P49427 236 aaPredicted RBP10.6□□□□□ -0.71
VPS39-210ENST00000568357 SERF2P84101 59 aa10.6□□□□□ -0.71
VPS39-210ENST00000568357 TMEM88Q6PEY1 159 aa10.6□□□□□ -0.71
VPS39-210ENST00000568357 RXFP4Q8TDU9 374 aa10.6□□□□□ -0.71
VPS39-210ENST00000568357 OTORQ9NRC9 128 aa10.6□□□□□ -0.71
VPS39-210ENST00000568357 RBAKDNA6NC62 111 aa10.59□□□□□ -0.71
VPS39-210ENST00000568357 CBY3A6NI87 242 aa10.59□□□□□ -0.71
VPS39-210ENST00000568357 ARPC5O15511 151 aa10.59□□□□□ -0.71
VPS39-210ENST00000568357 ARL14EPLP0DKL9 152 aa10.59□□□□□ -0.71
VPS39-210ENST00000568357 BORCS7-ASMTA0A0B4J1R7 106 aa10.58□□□□□ -0.72
VPS39-210ENST00000568357 TRBV7-9A0A0J9YWB2 115 aa10.58□□□□□ -0.72
VPS39-210ENST00000568357 MBP02144 154 aa10.58□□□□□ -0.72
VPS39-210ENST00000568357 SSX7Q7RTT5 188 aa10.58□□□□□ -0.72
VPS39-210ENST00000568357 LINC00612Q8N6U2 182 aa10.58□□□□□ -0.72
VPS39-210ENST00000568357 GNPNAT1Q96EK6 184 aaPredicted RBP10.58□□□□□ -0.72
VPS39-210ENST00000568357 LINC00467Q9BRT7 94 aa10.58□□□□□ -0.72
VPS39-210ENST00000568357 GSN-AS1Q9NRJ2 163 aa10.58□□□□□ -0.72
VPS39-210ENST00000568357 CYTL1Q9NRR1 136 aa10.58□□□□□ -0.72
VPS39-210ENST00000568357 SNURFLB1AK76 121 aa10.57□□□□□ -0.72
VPS39-210ENST00000568357 F5H768 121 aa10.57□□□□□ -0.72
VPS39-210ENST00000568357 ATP5G1P05496 136 aa10.57□□□□□ -0.72
VPS39-210ENST00000568357 P0DMU3 169 aa10.57□□□□□ -0.72
VPS39-210ENST00000568357 FAM231AP0DMU4 169 aa10.57□□□□□ -0.72
VPS39-210ENST00000568357 FAM231CP0DMU5 169 aa10.57□□□□□ -0.72
VPS39-210ENST00000568357 GCHFRP30047 84 aa10.57□□□□□ -0.72
VPS39-210ENST00000568357 ATP5G3P48201 142 aa10.57□□□□□ -0.72
VPS39-210ENST00000568357 EIF4E3Q8N5X7 224 aaKnown RBP10.57□□□□□ -0.72
VPS39-210ENST00000568357 POM121L12Q8N7R1 296 aa10.57□□□□□ -0.72
VPS39-210ENST00000568357 C11orf72Q8NBR9 251 aa10.57□□□□□ -0.72
VPS39-210ENST00000568357 SUN5Q8TC36 379 aa10.57□□□□□ -0.72
VPS39-210ENST00000568357 ACTR3CQ9C0K3 210 aaPredicted RBP10.57□□□□□ -0.72
VPS39-210ENST00000568357 TP53TG3Q9ULZ0 132 aa10.57□□□□□ -0.72
VPS39-210ENST00000568357 GAGE12BA1L429 117 aa10.56□□□□□ -0.72
VPS39-210ENST00000568357 GAGE7O76087 117 aa10.56□□□□□ -0.72
VPS39-210ENST00000568357 GAGE12FP0CL80 117 aa10.56□□□□□ -0.72
VPS39-210ENST00000568357 GAGE12GP0CL81 117 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms