RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 ATP5SQ99766 215 aa10.39□□□□□ -0.75
CLN3-213ENST00000565047 PYGO2Q9BRQ0 406 aa10.39□□□□□ -0.75
CLN3-213ENST00000565047 MRPL32Q9BYC8 188 aaKnown RBP10.39□□□□□ -0.75
CLN3-213ENST00000565047 OR51M1Q9H341 326 aa10.39□□□□□ -0.75
CLN3-213ENST00000565047 HSPB11Q9Y547 144 aa10.39□□□□□ -0.75
CLN3-213ENST00000565047 TIMM9Q9Y5J7 89 aa10.39□□□□□ -0.75
CLN3-213ENST00000565047 IGLV2-18A0A075B6J9 118 aa10.38□□□□□ -0.75
CLN3-213ENST00000565047 FAM3BP58499 235 aaPredicted RBP10.38□□□□□ -0.75
CLN3-213ENST00000565047 DEFA1P59665 94 aa10.38□□□□□ -0.75
CLN3-213ENST00000565047 DEFA3P59666 94 aa10.38□□□□□ -0.75
CLN3-213ENST00000565047 ICAM4Q14773 271 aa10.38□□□□□ -0.75
CLN3-213ENST00000565047 ZFAND2AQ8N6M9 145 aa10.38□□□□□ -0.75
CLN3-213ENST00000565047 ZNRF2Q8NHG8 242 aa10.38□□□□□ -0.75
CLN3-213ENST00000565047 VGLL1Q99990 258 aa10.38□□□□□ -0.75
CLN3-213ENST00000565047 WFDC1Q9HC57 220 aa10.38□□□□□ -0.75
CLN3-213ENST00000565047 BATF3Q9NR55 127 aa10.38□□□□□ -0.75
CLN3-213ENST00000565047 FUT9Q9Y231 359 aa10.38□□□□□ -0.75
CLN3-213ENST00000565047 RYR1P21817 5038 aa10.38□□□□□ -0.75
CLN3-213ENST00000565047 IGKV2-40A0A087WW87 121 aaPredicted RBP10.37□□□□□ -0.75
CLN3-213ENST00000565047 J3KRW8 73 aa10.37□□□□□ -0.75
CLN3-213ENST00000565047 IGKV2D-40P01614 121 aaPredicted RBP10.37□□□□□ -0.75
CLN3-213ENST00000565047 NMBP08949 121 aa10.37□□□□□ -0.75
CLN3-213ENST00000565047 HOXA5P20719 270 aa10.37□□□□□ -0.75
CLN3-213ENST00000565047 RPL12P30050 165 aaKnown RBP10.37□□□□□ -0.75
CLN3-213ENST00000565047 PRR9Q5T870 116 aa10.37□□□□□ -0.75
CLN3-213ENST00000565047 Q6ZQT7 251 aa10.37□□□□□ -0.75
CLN3-213ENST00000565047 UBE2DNLQ8IWF7 75 aa10.37□□□□□ -0.75
CLN3-213ENST00000565047 RNF141Q8WVD5 230 aa10.37□□□□□ -0.75
CLN3-213ENST00000565047 PHYHIPLQ96FC7 376 aa10.37□□□□□ -0.75
CLN3-213ENST00000565047 PAXXQ9BUH6 204 aa10.37□□□□□ -0.75
CLN3-213ENST00000565047 C7orf71A4D174 169 aa10.36□□□□□ -0.75
CLN3-213ENST00000565047 SSNA1O43805 119 aa10.36□□□□□ -0.75
CLN3-213ENST00000565047 OR10J4P0C629 311 aa10.36□□□□□ -0.75
CLN3-213ENST00000565047 BTN1A1Q13410 526 aa10.36□□□□□ -0.75
CLN3-213ENST00000565047 ANXA2RQ3ZCQ2 193 aa10.36□□□□□ -0.75
CLN3-213ENST00000565047 FAM122CQ6P4D5 195 aa10.36□□□□□ -0.75
CLN3-213ENST00000565047 CCDC28AQ8IWP9 274 aa10.36□□□□□ -0.75
CLN3-213ENST00000565047 C18orf15Q96N68 181 aa10.36□□□□□ -0.75
CLN3-213ENST00000565047 KCNIP2Q9NS61 270 aa10.36□□□□□ -0.75
CLN3-213ENST00000565047 ZNF492Q9P255 531 aa10.36□□□□□ -0.75
CLN3-213ENST00000565047 MBD2Q9UBB5 411 aa10.36□□□□□ -0.75
CLN3-213ENST00000565047 LRP1BQ9NZR2 4599 aa10.36□□□□□ -0.75
CLN3-213ENST00000565047 PRSS29PA6NIE9 313 aa10.35□□□□□ -0.75
CLN3-213ENST00000565047 C17orf112F2Z3M2 114 aa10.35□□□□□ -0.75
CLN3-213ENST00000565047 AAMDCQ9H7C9 122 aa10.35□□□□□ -0.75
CLN3-213ENST00000565047 LINC00588Q9Y4M8 146 aa10.35□□□□□ -0.75
CLN3-213ENST00000565047 TRBV7-9A0A0J9YWB2 115 aa10.34□□□□□ -0.75
CLN3-213ENST00000565047 GAGE12BA1L429 117 aa10.34□□□□□ -0.75
CLN3-213ENST00000565047 GAGE7O76087 117 aa10.34□□□□□ -0.75
CLN3-213ENST00000565047 GAGE12FP0CL80 117 aa10.34□□□□□ -0.75
CLN3-213ENST00000565047 GAGE12GP0CL81 117 aa10.34□□□□□ -0.75
CLN3-213ENST00000565047 GAGE12IP0CL82 117 aa10.34□□□□□ -0.75
CLN3-213ENST00000565047 PET100P0DJ07 73 aa10.34□□□□□ -0.75
CLN3-213ENST00000565047 Q6ZTI0 123 aa10.34□□□□□ -0.75
CLN3-213ENST00000565047 LYPD1Q8N2G4 141 aa10.34□□□□□ -0.75
CLN3-213ENST00000565047 SMIM3Q9BZL3 60 aa10.34□□□□□ -0.75
CLN3-213ENST00000565047 GSN-AS1Q9NRJ2 163 aa10.34□□□□□ -0.75
CLN3-213ENST00000565047 RBAKDNA6NC62 111 aa10.33□□□□□ -0.76
CLN3-213ENST00000565047 H3BNG1 76 aa10.33□□□□□ -0.76
CLN3-213ENST00000565047 SPINK4O60575 86 aa10.33□□□□□ -0.76
CLN3-213ENST00000565047 NUDT3O95989 172 aa10.33□□□□□ -0.76
CLN3-213ENST00000565047 M6PRP20645 277 aa10.33□□□□□ -0.76
CLN3-213ENST00000565047 RNASE4P34096 147 aaKnown RBP10.33□□□□□ -0.76
CLN3-213ENST00000565047 FFAR4Q5NUL3 377 aa10.33□□□□□ -0.76
CLN3-213ENST00000565047 EIF4E3Q8N5X7 224 aaKnown RBP10.33□□□□□ -0.76
CLN3-213ENST00000565047 TP53TG3Q9ULZ0 132 aa10.33□□□□□ -0.76
CLN3-213ENST00000565047 ALG5Q9Y673 324 aa10.33□□□□□ -0.76
CLN3-213ENST00000565047 TRAV26-1A0A087WT03 109 aa10.32□□□□□ -0.76
CLN3-213ENST00000565047 SNURFLB1AK76 121 aa10.32□□□□□ -0.76
CLN3-213ENST00000565047 EIF3GO75821 320 aaKnown RBP eCLIP10.32□□□□□ -0.76
CLN3-213ENST00000565047 ZNF138P52744 262 aa10.32□□□□□ -0.76
CLN3-213ENST00000565047 RANP62826 216 aaKnown RBP10.32□□□□□ -0.76
CLN3-213ENST00000565047 TMEM78Q5T7P6 136 aa10.32□□□□□ -0.76
CLN3-213ENST00000565047 ZNF680Q8NEM1 530 aa10.32□□□□□ -0.76
CLN3-213ENST00000565047 RXFP4Q8TDU9 374 aa10.32□□□□□ -0.76
CLN3-213ENST00000565047 Q9H3A6 140 aa10.32□□□□□ -0.76
CLN3-213ENST00000565047 TMPRSS5Q9H3S3 457 aa10.32□□□□□ -0.76
CLN3-213ENST00000565047 KLF12Q9Y4X4 402 aa10.32□□□□□ -0.76
CLN3-213ENST00000565047 DNAH5Q8TE73 4624 aa10.31□□□□□ -0.76
CLN3-213ENST00000565047 HSPG2P98160 4391 aa10.31□□□□□ -0.76
CLN3-213ENST00000565047 OR7C2O60412 319 aa10.31□□□□□ -0.76
CLN3-213ENST00000565047 IFNA5P01569 189 aa10.31□□□□□ -0.76
CLN3-213ENST00000565047 GPX1P07203 203 aa10.31□□□□□ -0.76
CLN3-213ENST00000565047 TCL1AP56279 114 aa10.31□□□□□ -0.76
CLN3-213ENST00000565047 OR5I1Q13606 314 aa10.31□□□□□ -0.76
CLN3-213ENST00000565047 IBA57Q5T440 356 aaKnown RBP10.31□□□□□ -0.76
CLN3-213ENST00000565047 Q8TAT8 98 aa10.31□□□□□ -0.76
CLN3-213ENST00000565047 VSIG2Q96IQ7 327 aa10.31□□□□□ -0.76
CLN3-213ENST00000565047 KRTAP17-1Q9BYP8 105 aa10.31□□□□□ -0.76
CLN3-213ENST00000565047 NBDYA0A0U1RRE5 68 aa10.3□□□□□ -0.76
CLN3-213ENST00000565047 DIRC3C9JPN6 131 aa10.3□□□□□ -0.76
CLN3-213ENST00000565047 PTTG1O95997 202 aa10.3□□□□□ -0.76
CLN3-213ENST00000565047 UBE2L3P68036 154 aaKnown RBP10.3□□□□□ -0.76
CLN3-213ENST00000565047 ZNF266Q14584 549 aa10.3□□□□□ -0.76
CLN3-213ENST00000565047 ESRGQ1W209 222 aa10.3□□□□□ -0.76
CLN3-213ENST00000565047 C1orf134Q5TEV5 83 aa10.3□□□□□ -0.76
CLN3-213ENST00000565047 SSX7Q7RTT5 188 aa10.3□□□□□ -0.76
CLN3-213ENST00000565047 SCGB1C1Q8TD33 95 aa10.3□□□□□ -0.76
CLN3-213ENST00000565047 GNPNAT1Q96EK6 184 aaPredicted RBP10.3□□□□□ -0.76
CLN3-213ENST00000565047 ATG101Q9BSB4 218 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 212.9 ms