RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 C20orf144Q9BQM9 153 aa12.05□□□□□ -0.48
CLK3-207ENST00000562389 TMEM208Q9BTX3 173 aa12.05□□□□□ -0.48
CLK3-207ENST00000562389 PGPA6NDG6 321 aa12.04□□□□□ -0.48
CLK3-207ENST00000562389 DIRC3C9JPN6 131 aa12.04□□□□□ -0.48
CLK3-207ENST00000562389 TPT1P13693 172 aaKnown RBP12.04□□□□□ -0.48
CLK3-207ENST00000562389 TMEM78Q5T7P6 136 aa12.04□□□□□ -0.48
CLK3-207ENST00000562389 VGLL1Q99990 258 aa12.04□□□□□ -0.48
CLK3-207ENST00000562389 TMEM189A5PLL7 270 aa12.03□□□□□ -0.48
CLK3-207ENST00000562389 UMAD1C9J7I0 102 aa12.03□□□□□ -0.48
CLK3-207ENST00000562389 CD300CQ08708 224 aa12.03□□□□□ -0.48
CLK3-207ENST00000562389 KIR3DS1Q14943 382 aa12.03□□□□□ -0.48
CLK3-207ENST00000562389 RRN3P1Q2M238 152 aa12.03□□□□□ -0.48
CLK3-207ENST00000562389 GFI1BQ5VTD9 330 aa12.03□□□□□ -0.48
CLK3-207ENST00000562389 C11orf45Q8TAV5 145 aa12.03□□□□□ -0.48
CLK3-207ENST00000562389 CMTM2Q8TAZ6 248 aa12.03□□□□□ -0.48
CLK3-207ENST00000562389 PLA2G2EQ9NZK7 142 aa12.03□□□□□ -0.48
CLK3-207ENST00000562389 ZNF492Q9P255 531 aa12.03□□□□□ -0.48
CLK3-207ENST00000562389 TRBV7-9A0A0J9YWB2 115 aa12.02□□□□□ -0.49
CLK3-207ENST00000562389 KLLNB2CW77 178 aa12.02□□□□□ -0.49
CLK3-207ENST00000562389 CRISP2P16562 243 aa12.02□□□□□ -0.49
CLK3-207ENST00000562389 LOC102723971A0A1B0GUV8 181 aa12.01□□□□□ -0.49
CLK3-207ENST00000562389 MAP1LC3B2A6NCE7 125 aa12.01□□□□□ -0.49
CLK3-207ENST00000562389 NMBP08949 121 aa12.01□□□□□ -0.49
CLK3-207ENST00000562389 ZNF138P52744 262 aa12.01□□□□□ -0.49
CLK3-207ENST00000562389 TAS2R60P59551 318 aa12.01□□□□□ -0.49
CLK3-207ENST00000562389 NANOS2P60321 138 aaKnown RBP12.01□□□□□ -0.49
CLK3-207ENST00000562389 DPPA3Q6W0C5 159 aa12.01□□□□□ -0.49
CLK3-207ENST00000562389 IQCF2Q8IXL9 164 aa12.01□□□□□ -0.49
CLK3-207ENST00000562389 LINC01587Q99440 93 aa12.01□□□□□ -0.49
CLK3-207ENST00000562389 MAP1LC3BQ9GZQ8 125 aa12.01□□□□□ -0.49
CLK3-207ENST00000562389 A0A1W2PRE2 83 aa12□□□□□ -0.49
CLK3-207ENST00000562389 CXorf65A6NEN9 183 aa12□□□□□ -0.49
CLK3-207ENST00000562389 H7BYZ3 331 aa12□□□□□ -0.49
CLK3-207ENST00000562389 J3KRW8 73 aa12□□□□□ -0.49
CLK3-207ENST00000562389 FHITP49789 147 aa12□□□□□ -0.49
CLK3-207ENST00000562389 FGF8P55075 233 aaPredicted RBP12□□□□□ -0.49
CLK3-207ENST00000562389 PMS2P11Q13670 270 aa12□□□□□ -0.49
CLK3-207ENST00000562389 ZFP69Q49AA0 526 aa12□□□□□ -0.49
CLK3-207ENST00000562389 C9orf62Q8N4C0 152 aa12□□□□□ -0.49
CLK3-207ENST00000562389 C5orf17Q8NAS9 161 aa12□□□□□ -0.49
CLK3-207ENST00000562389 TMED6Q8WW62 240 aa12□□□□□ -0.49
CLK3-207ENST00000562389 TMPRSS5Q9H3S3 457 aa12□□□□□ -0.49
CLK3-207ENST00000562389 RPH3ALQ9UNE2 315 aa12□□□□□ -0.49
CLK3-207ENST00000562389 CELA1Q9UNI1 258 aa12□□□□□ -0.49
CLK3-207ENST00000562389 LENEPQ9Y5L5 61 aa12□□□□□ -0.49
CLK3-207ENST00000562389 SERTM2A0A1B0GWG4 89 aa11.99□□□□□ -0.49
CLK3-207ENST00000562389 C7orf71A4D174 169 aa11.99□□□□□ -0.49
CLK3-207ENST00000562389 NUPR2A6NF83 97 aa11.99□□□□□ -0.49
CLK3-207ENST00000562389 ZNF705GA8MUZ8 300 aaPredicted RBP11.99□□□□□ -0.49
CLK3-207ENST00000562389 GGTLC3B5MD39 225 aa11.99□□□□□ -0.49
CLK3-207ENST00000562389 GNG5P63218 68 aa11.99□□□□□ -0.49
CLK3-207ENST00000562389 GOLT1AQ6ZVE7 132 aa11.99□□□□□ -0.49
CLK3-207ENST00000562389 SLC51BQ86UW2 128 aa11.99□□□□□ -0.49
CLK3-207ENST00000562389 ZFAND2AQ8N6M9 145 aa11.99□□□□□ -0.49
CLK3-207ENST00000562389 Q8TAT8 98 aa11.99□□□□□ -0.49
CLK3-207ENST00000562389 NIPSNAP3BQ9BS92 247 aa11.99□□□□□ -0.49
CLK3-207ENST00000562389 CSMD3Q7Z407 3707 aa11.98□□□□□ -0.49
CLK3-207ENST00000562389 TRAV12-3A0A0B4J271 114 aa11.98□□□□□ -0.49
CLK3-207ENST00000562389 TEX48A0A1B0GUV7 120 aa11.98□□□□□ -0.49
CLK3-207ENST00000562389 SUMO1P63165 101 aaKnown RBP11.98□□□□□ -0.49
CLK3-207ENST00000562389 EIF5AL1Q6IS14 154 aaKnown RBP11.98□□□□□ -0.49
CLK3-207ENST00000562389 FAM213BQ8TBF2 198 aa11.98□□□□□ -0.49
CLK3-207ENST00000562389 MBD3L1Q8WWY6 194 aa11.98□□□□□ -0.49
CLK3-207ENST00000562389 TCRAP04437 139 aa11.97□□□□□ -0.49
CLK3-207ENST00000562389 PRM2P04554 102 aa11.97□□□□□ -0.49
CLK3-207ENST00000562389 GPX1P07203 203 aa11.97□□□□□ -0.49
CLK3-207ENST00000562389 SPART-AS1P0CW21 52 aa11.97□□□□□ -0.49
CLK3-207ENST00000562389 EMP1P54849 157 aa11.97□□□□□ -0.49
CLK3-207ENST00000562389 BTN1A1Q13410 526 aa11.97□□□□□ -0.49
CLK3-207ENST00000562389 PRR9Q5T870 116 aa11.97□□□□□ -0.49
CLK3-207ENST00000562389 CEMP1Q6PRD7 247 aaPredicted RBP11.97□□□□□ -0.49
CLK3-207ENST00000562389 PHLDA1Q8WV24 401 aaPredicted RBP11.97□□□□□ -0.49
CLK3-207ENST00000562389 C16orf74Q96GX8 76 aa11.97□□□□□ -0.49
CLK3-207ENST00000562389 PYGO2Q9BRQ0 406 aa11.97□□□□□ -0.49
CLK3-207ENST00000562389 NKX6-2Q9C056 277 aaPredicted RBP11.97□□□□□ -0.49
CLK3-207ENST00000562389 DKK2Q9UBU2 259 aa11.97□□□□□ -0.49
CLK3-207ENST00000562389 YTHDF2Q9Y5A9 579 aaKnown RBP11.97□□□□□ -0.49
CLK3-207ENST00000562389 STARD9Q9P2P6 4700 aa11.96□□□□□ -0.49
CLK3-207ENST00000562389 PLAC8L1A1L4L8 177 aa11.96□□□□□ -0.49
CLK3-207ENST00000562389 FAM74A7A6NL05 159 aa11.96□□□□□ -0.49
CLK3-207ENST00000562389 ZNF324O75467 553 aaPredicted RBP11.96□□□□□ -0.49
CLK3-207ENST00000562389 AZU1P20160 251 aa11.96□□□□□ -0.49
CLK3-207ENST00000562389 RAB5CP51148 216 aa11.96□□□□□ -0.49
CLK3-207ENST00000562389 TMEM263Q8WUH6 116 aaKnown RBP11.96□□□□□ -0.49
CLK3-207ENST00000562389 EPDR1Q9UM22 224 aa11.96□□□□□ -0.49
CLK3-207ENST00000562389 ARL2-SNX15V9GYD0 113 aa11.96□□□□□ -0.49
CLK3-207ENST00000562389 C11orf94C9JXX5 98 aa11.95□□□□□ -0.5
CLK3-207ENST00000562389 K7EQM0 130 aa11.95□□□□□ -0.5
CLK3-207ENST00000562389 HTN1P15515 57 aa11.95□□□□□ -0.5
CLK3-207ENST00000562389 RNASE4P34096 147 aaKnown RBP11.95□□□□□ -0.5
CLK3-207ENST00000562389 UBE2G2P60604 165 aa11.95□□□□□ -0.5
CLK3-207ENST00000562389 C12orf74Q32Q52 190 aa11.95□□□□□ -0.5
CLK3-207ENST00000562389 FAM222AQ5U5X8 452 aa11.95□□□□□ -0.5
CLK3-207ENST00000562389 ZNF493Q6ZR52 646 aa11.95□□□□□ -0.5
CLK3-207ENST00000562389 RNASE8Q8TDE3 154 aaKnown RBP11.95□□□□□ -0.5
CLK3-207ENST00000562389 SFT2D1Q8WV19 159 aa11.95□□□□□ -0.5
CLK3-207ENST00000562389 LINC00467Q9BRT7 94 aa11.95□□□□□ -0.5
CLK3-207ENST00000562389 ATG101Q9BSB4 218 aa11.95□□□□□ -0.5
CLK3-207ENST00000562389 TRAV8-1A0A0A6YYK1 113 aa11.94□□□□□ -0.5
CLK3-207ENST00000562389 H2AFB1P0C5Y9 115 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 136.2 ms