RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 SLC25A2Q9BXI2 301 aa13.19□□□□□ -0.3
VPS35-202ENST00000561713 KRTAP1-5Q9BYS1 174 aa13.19□□□□□ -0.3
VPS35-202ENST00000561713 SCRT2Q9NQ03 307 aa13.19□□□□□ -0.3
VPS35-202ENST00000561713 C7orf71A4D174 169 aa13.18□□□□□ -0.3
VPS35-202ENST00000561713 ZNF253O75346 499 aa13.18□□□□□ -0.3
VPS35-202ENST00000561713 M6PRP20645 277 aa13.18□□□□□ -0.3
VPS35-202ENST00000561713 CD300CQ08708 224 aa13.18□□□□□ -0.3
VPS35-202ENST00000561713 ASAH1Q13510 395 aa13.18□□□□□ -0.3
VPS35-202ENST00000561713 MZT2BQ6NZ67 158 aa13.18□□□□□ -0.3
VPS35-202ENST00000561713 MIR17HGQ75NE6 70 aa13.18□□□□□ -0.3
VPS35-202ENST00000561713 OR5AC2Q9NZP5 309 aa13.18□□□□□ -0.3
VPS35-202ENST00000561713 TMEM14CQ9P0S9 112 aa13.18□□□□□ -0.3
VPS35-202ENST00000561713 HIST1H1EP10412 219 aaKnown RBP13.17□□□□□ -0.3
VPS35-202ENST00000561713 PRR9Q5T870 116 aa13.17□□□□□ -0.3
VPS35-202ENST00000561713 FAM122CQ6P4D5 195 aa13.17□□□□□ -0.3
VPS35-202ENST00000561713 Q6ZQT7 251 aa13.17□□□□□ -0.3
VPS35-202ENST00000561713 SPATA12Q7Z6I5 190 aa13.17□□□□□ -0.3
VPS35-202ENST00000561713 OR5C1Q8NGR4 320 aa13.17□□□□□ -0.3
VPS35-202ENST00000561713 ENKURQ8TC29 256 aa13.17□□□□□ -0.3
VPS35-202ENST00000561713 GSN-AS1Q9NRJ2 163 aa13.17□□□□□ -0.3
VPS35-202ENST00000561713 TIMM9Q9Y5J7 89 aa13.17□□□□□ -0.3
VPS35-202ENST00000561713 ICAM4Q14773 271 aa13.16□□□□□ -0.3
VPS35-202ENST00000561713 RXFP4Q8TDU9 374 aa13.16□□□□□ -0.3
VPS35-202ENST00000561713 MRPL53Q96EL3 112 aaKnown RBP13.16□□□□□ -0.3
VPS35-202ENST00000561713 FAM167A-AS1Q96KT0 104 aa13.16□□□□□ -0.3
VPS35-202ENST00000561713 PYGO2Q9BRQ0 406 aa13.16□□□□□ -0.3
VPS35-202ENST00000561713 AGPAT4-IT1Q9H0P7 198 aa13.16□□□□□ -0.3
VPS35-202ENST00000561713 KLLNB2CW77 178 aa13.15□□□□□ -0.3
VPS35-202ENST00000561713 H0YIZ8 118 aa13.15□□□□□ -0.3
VPS35-202ENST00000561713 SLC25A5P05141 298 aaKnown RBP13.15□□□□□ -0.3
VPS35-202ENST00000561713 OR10J4P0C629 311 aa13.15□□□□□ -0.3
VPS35-202ENST00000561713 RNASE4P34096 147 aaKnown RBP13.15□□□□□ -0.3
VPS35-202ENST00000561713 ATP6V1FQ16864 119 aa13.15□□□□□ -0.3
VPS35-202ENST00000561713 C11orf72Q8NBR9 251 aa13.15□□□□□ -0.3
VPS35-202ENST00000561713 Q8TAT8 98 aa13.15□□□□□ -0.3
VPS35-202ENST00000561713 VGLL1Q99990 258 aa13.15□□□□□ -0.3
VPS35-202ENST00000561713 TRGV1A0A0A0MS02 117 aa13.14□□□□□ -0.31
VPS35-202ENST00000561713 PDE6HQ13956 83 aa13.14□□□□□ -0.31
VPS35-202ENST00000561713 CHAC2Q8WUX2 184 aa13.14□□□□□ -0.31
VPS35-202ENST00000561713 PHYHIPLQ96FC7 376 aa13.14□□□□□ -0.31
VPS35-202ENST00000561713 FAM19A4Q96LR4 140 aa13.14□□□□□ -0.31
VPS35-202ENST00000561713 MPDU1O75352 247 aa13.13□□□□□ -0.31
VPS35-202ENST00000561713 IFITM3Q01628 133 aa13.13□□□□□ -0.31
VPS35-202ENST00000561713 AAMDCQ9H7C9 122 aa13.13□□□□□ -0.31
VPS35-202ENST00000561713 TP53TG3Q9ULZ0 132 aa13.13□□□□□ -0.31
VPS35-202ENST00000561713 KLF12Q9Y4X4 402 aa13.13□□□□□ -0.31
VPS35-202ENST00000561713 TRGV2A0A075B6R0 118 aa13.12□□□□□ -0.31
VPS35-202ENST00000561713 EIF3GO75821 320 aaKnown RBP eCLIP13.12□□□□□ -0.31
VPS35-202ENST00000561713 UPK1BO75841 260 aa13.12□□□□□ -0.31
VPS35-202ENST00000561713 KRTAP10-2P60368 255 aa13.12□□□□□ -0.31
VPS35-202ENST00000561713 DAZ2Q13117 558 aaKnown RBP13.12□□□□□ -0.31
VPS35-202ENST00000561713 ESRGQ1W209 222 aa13.12□□□□□ -0.31
VPS35-202ENST00000561713 ZFAND2AQ8N6M9 145 aa13.12□□□□□ -0.31
VPS35-202ENST00000561713 ZNF680Q8NEM1 530 aa13.12□□□□□ -0.31
VPS35-202ENST00000561713 S100ZQ8WXG8 99 aa13.12□□□□□ -0.31
VPS35-202ENST00000561713 Q9H8V8 135 aa13.12□□□□□ -0.31
VPS35-202ENST00000561713 PRELID1Q9Y255 219 aa13.12□□□□□ -0.31
VPS35-202ENST00000561713 E5RGE8 158 aa13.11□□□□□ -0.31
VPS35-202ENST00000561713 ZNF324O75467 553 aaPredicted RBP13.11□□□□□ -0.31
VPS35-202ENST00000561713 IGHV3-53P01767 116 aa13.11□□□□□ -0.31
VPS35-202ENST00000561713 GPX1P07203 203 aa13.11□□□□□ -0.31
VPS35-202ENST00000561713 EIF4E3Q8N5X7 224 aaKnown RBP13.11□□□□□ -0.31
VPS35-202ENST00000561713 FXYD5Q96DB9 178 aa13.11□□□□□ -0.31
VPS35-202ENST00000561713 VSIG2Q96IQ7 327 aa13.11□□□□□ -0.31
VPS35-202ENST00000561713 MRPL16Q9NX20 251 aaKnown RBP13.11□□□□□ -0.31
VPS35-202ENST00000561713 FUT9Q9Y231 359 aa13.11□□□□□ -0.31
VPS35-202ENST00000561713 CRISP2P16562 243 aa13.1□□□□□ -0.31
VPS35-202ENST00000561713 H2BFSP57053 126 aa13.1□□□□□ -0.31
VPS35-202ENST00000561713 TMEM78Q5T7P6 136 aa13.1□□□□□ -0.31
VPS35-202ENST00000561713 C9orf47Q6ZRZ4 202 aa13.1□□□□□ -0.31
VPS35-202ENST00000561713 ZNF503Q96F45 646 aa13.1□□□□□ -0.31
VPS35-202ENST00000561713 LINC00477Q96M19 166 aa13.1□□□□□ -0.31
VPS35-202ENST00000561713 PAXXQ9BUH6 204 aa13.1□□□□□ -0.31
VPS35-202ENST00000561713 NMES1Q9C002 83 aa13.1□□□□□ -0.31
VPS35-202ENST00000561713 WDR61Q9GZS3 305 aaKnown RBP13.1□□□□□ -0.31
VPS35-202ENST00000561713 SLC25A31Q9H0C2 315 aa13.1□□□□□ -0.31
VPS35-202ENST00000561713 OR51M1Q9H341 326 aa13.1□□□□□ -0.31
VPS35-202ENST00000561713 RGS13O14921 159 aa13.09□□□□□ -0.31
VPS35-202ENST00000561713 OR7C2O60412 319 aa13.09□□□□□ -0.31
VPS35-202ENST00000561713 NBEAP1P0C6P0 100 aa13.09□□□□□ -0.31
VPS35-202ENST00000561713 TCL1AP56279 114 aa13.09□□□□□ -0.31
VPS35-202ENST00000561713 SMIM3Q9BZL3 60 aa13.09□□□□□ -0.31
VPS35-202ENST00000561713 MRPS16Q9Y3D3 137 aaKnown RBP13.09□□□□□ -0.31
VPS35-202ENST00000561713 A0A096LPF7 62 aa13.08□□□□□ -0.32
VPS35-202ENST00000561713 INMT-MINDY4F8WBC2 141 aa13.08□□□□□ -0.32
VPS35-202ENST00000561713 ANXA2RQ3ZCQ2 193 aa13.08□□□□□ -0.32
VPS35-202ENST00000561713 MRPL32Q9BYC8 188 aaKnown RBP13.08□□□□□ -0.32
VPS35-202ENST00000561713 Q9H3A6 140 aa13.08□□□□□ -0.32
VPS35-202ENST00000561713 FAT1Q14517 4588 aa13.07□□□□□ -0.32
VPS35-202ENST00000561713 SPINK4O60575 86 aa13.07□□□□□ -0.32
VPS35-202ENST00000561713 UBE2L3P68036 154 aaKnown RBP13.07□□□□□ -0.32
VPS35-202ENST00000561713 TTC32Q5I0X7 151 aa13.07□□□□□ -0.32
VPS35-202ENST00000561713 MUC21Q5SSG8 566 aa13.07□□□□□ -0.32
VPS35-202ENST00000561713 LINC00299Q6ZSB3 139 aa13.07□□□□□ -0.32
VPS35-202ENST00000561713 PPP1R1CQ8WVI7 109 aa13.07□□□□□ -0.32
VPS35-202ENST00000561713 ATP5SQ99766 215 aa13.07□□□□□ -0.32
VPS35-202ENST00000561713 ARPC5LQ9BPX5 153 aa13.07□□□□□ -0.32
VPS35-202ENST00000561713 LINC00467Q9BRT7 94 aa13.07□□□□□ -0.32
VPS35-202ENST00000561713 UPK3BQ9BT76 320 aa13.07□□□□□ -0.32
VPS35-202ENST00000561713 KCNIP2Q9NS61 270 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms