RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 NHLRC4P0CG21 123 aaPredicted RBP6.8□□□□□ -1.32
LDLR-210ENST00000559340 BCL2P10415 239 aa6.8□□□□□ -1.32
LDLR-210ENST00000559340 ZNF138P52744 262 aa6.8□□□□□ -1.32
LDLR-210ENST00000559340 CCL20P78556 96 aa6.8□□□□□ -1.32
LDLR-210ENST00000559340 GDF5OSQ5U4N7 250 aa6.8□□□□□ -1.32
LDLR-210ENST00000559340 GOLT1AQ6ZVE7 132 aa6.8□□□□□ -1.32
LDLR-210ENST00000559340 ZMAT4Q9H898 229 aa6.8□□□□□ -1.32
LDLR-210ENST00000559340 ZNF492Q9P255 531 aa6.8□□□□□ -1.32
LDLR-210ENST00000559340 RBFOX3A6NFN3 312 aa6.79□□□□□ -1.32
LDLR-210ENST00000559340 PRAC2D3DTV9 90 aa6.79□□□□□ -1.32
LDLR-210ENST00000559340 PEX7O00628 323 aa6.79□□□□□ -1.32
LDLR-210ENST00000559340 CA1P00915 261 aaPredicted RBP6.79□□□□□ -1.32
LDLR-210ENST00000559340 ZNF705DP0CH99 300 aaPredicted RBP6.79□□□□□ -1.32
LDLR-210ENST00000559340 ZNF705BP0CI00 300 aaPredicted RBP6.79□□□□□ -1.32
LDLR-210ENST00000559340 AKR1C3P42330 323 aa6.79□□□□□ -1.32
LDLR-210ENST00000559340 CDKN1BP46527 198 aa6.79□□□□□ -1.32
LDLR-210ENST00000559340 UBE2G1P62253 170 aa6.79□□□□□ -1.32
LDLR-210ENST00000559340 MEF2BQ02080 365 aaPredicted RBP6.79□□□□□ -1.32
LDLR-210ENST00000559340 HAGHQ16775 308 aa6.79□□□□□ -1.32
LDLR-210ENST00000559340 SAPCD1Q5SSQ6 148 aa6.79□□□□□ -1.32
LDLR-210ENST00000559340 Q6ZWC4 215 aa6.79□□□□□ -1.32
LDLR-210ENST00000559340 CCDC28AQ8IWP9 274 aa6.79□□□□□ -1.32
LDLR-210ENST00000559340 TMEM75Q8N9X5 138 aa6.79□□□□□ -1.32
LDLR-210ENST00000559340 B9D2Q9BPU9 175 aa6.79□□□□□ -1.32
LDLR-210ENST00000559340 C20orf144Q9BQM9 153 aa6.79□□□□□ -1.32
LDLR-210ENST00000559340 EIF5A2Q9GZV4 153 aaKnown RBP6.79□□□□□ -1.32
LDLR-210ENST00000559340 AGPAT4-IT1Q9H0P7 198 aa6.79□□□□□ -1.32
LDLR-210ENST00000559340 DNAH3Q8TD57 4116 aa6.78□□□□□ -1.32
LDLR-210ENST00000559340 IGKV2-40A0A087WW87 121 aaPredicted RBP6.78□□□□□ -1.32
LDLR-210ENST00000559340 LOC102723971A0A1B0GUV8 181 aa6.78□□□□□ -1.32
LDLR-210ENST00000559340 IGKV2D-40P01614 121 aaPredicted RBP6.78□□□□□ -1.32
LDLR-210ENST00000559340 ATP5G3P48201 142 aa6.78□□□□□ -1.32
LDLR-210ENST00000559340 DEFB1P60022 68 aa6.78□□□□□ -1.32
LDLR-210ENST00000559340 GNG5P63218 68 aa6.78□□□□□ -1.32
LDLR-210ENST00000559340 FLI1Q01543 452 aaPredicted RBP6.78□□□□□ -1.32
LDLR-210ENST00000559340 ERCC8Q13216 396 aa6.78□□□□□ -1.32
LDLR-210ENST00000559340 PEA15Q15121 130 aa6.78□□□□□ -1.32
LDLR-210ENST00000559340 ZNF506Q5JVG8 444 aa6.78□□□□□ -1.32
LDLR-210ENST00000559340 CLLU1Q5K131 121 aa6.78□□□□□ -1.32
LDLR-210ENST00000559340 FMC1Q96HJ9 113 aa6.78□□□□□ -1.32
LDLR-210ENST00000559340 RCHY1Q96PM5 261 aa6.78□□□□□ -1.32
LDLR-210ENST00000559340 VGLL1Q99990 258 aa6.78□□□□□ -1.32
LDLR-210ENST00000559340 SPATA25Q9BR10 227 aa6.78□□□□□ -1.32
LDLR-210ENST00000559340 SMDT1Q9H4I9 107 aa6.78□□□□□ -1.32
LDLR-210ENST00000559340 PSG8Q9UQ74 426 aa6.78□□□□□ -1.32
LDLR-210ENST00000559340 TP53TG1Q9Y2A0 90 aa6.78□□□□□ -1.32
LDLR-210ENST00000559340 ZFP30Q9Y2G7 519 aa6.78□□□□□ -1.32
LDLR-210ENST00000559340 GOLT1BQ9Y3E0 138 aa6.78□□□□□ -1.32
LDLR-210ENST00000559340 TRBV6-1A0A0K0K1D8 114 aa6.77□□□□□ -1.33
LDLR-210ENST00000559340 SPRY2O43597 315 aa6.77□□□□□ -1.33
LDLR-210ENST00000559340 INSP01308 110 aa6.77□□□□□ -1.33
LDLR-210ENST00000559340 GPX1P07203 203 aa6.77□□□□□ -1.33
LDLR-210ENST00000559340 CT45A10P0DMU9 189 aa6.77□□□□□ -1.33
LDLR-210ENST00000559340 CRISP2P16562 243 aa6.77□□□□□ -1.33
LDLR-210ENST00000559340 TAS2R60P59551 318 aa6.77□□□□□ -1.33
LDLR-210ENST00000559340 TMEM183BQ1AE95 376 aa6.77□□□□□ -1.33
LDLR-210ENST00000559340 AMTNQ6UX39 209 aa6.77□□□□□ -1.33
LDLR-210ENST00000559340 TMEM256Q8N2U0 113 aa6.77□□□□□ -1.33
LDLR-210ENST00000559340 IGF2BP2-AS1Q96M15 143 aa6.77□□□□□ -1.33
LDLR-210ENST00000559340 FAM210AQ96ND0 272 aa6.77□□□□□ -1.33
LDLR-210ENST00000559340 MED9Q9NWA0 146 aa6.77□□□□□ -1.33
LDLR-210ENST00000559340 XCL2Q9UBD3 114 aa6.77□□□□□ -1.33
LDLR-210ENST00000559340 KLF12Q9Y4X4 402 aa6.77□□□□□ -1.33
LDLR-210ENST00000559340 TMEM250H0YL14 139 aa6.76□□□□□ -1.33
LDLR-210ENST00000559340 FXYD7P58549 80 aa6.76□□□□□ -1.33
LDLR-210ENST00000559340 IFITM2Q01629 132 aa6.76□□□□□ -1.33
LDLR-210ENST00000559340 SPINK13Q1W4C9 94 aa6.76□□□□□ -1.33
LDLR-210ENST00000559340 SMUG1Q53HV7 270 aa6.76□□□□□ -1.33
LDLR-210ENST00000559340 TOR2AQ5JU69 321 aa6.76□□□□□ -1.33
LDLR-210ENST00000559340 PRNTQ86SH4 94 aa6.76□□□□□ -1.33
LDLR-210ENST00000559340 SBSPONQ8IVN8 264 aa6.76□□□□□ -1.33
LDLR-210ENST00000559340 C11orf52Q96A22 123 aa6.76□□□□□ -1.33
LDLR-210ENST00000559340 RNF183Q96D59 192 aa6.76□□□□□ -1.33
LDLR-210ENST00000559340 NIPSNAP3BQ9BS92 247 aa6.76□□□□□ -1.33
LDLR-210ENST00000559340 TMEM208Q9BTX3 173 aa6.76□□□□□ -1.33
LDLR-210ENST00000559340 SLC35B3Q9H1N7 401 aa6.76□□□□□ -1.33
LDLR-210ENST00000559340 TREM1Q9NP99 234 aa6.76□□□□□ -1.33
LDLR-210ENST00000559340 BIN3Q9NQY0 253 aa6.76□□□□□ -1.33
LDLR-210ENST00000559340 PRKDCP78527 4128 aaKnown RBP6.76□□□□□ -1.33
LDLR-210ENST00000559340 SCO2A0A1W2PP80 73 aa6.75□□□□□ -1.33
LDLR-210ENST00000559340 C7orf71A4D174 169 aa6.75□□□□□ -1.33
LDLR-210ENST00000559340 RAB19A4D1S5 217 aa6.75□□□□□ -1.33
LDLR-210ENST00000559340 SMIM9A6NGZ8 99 aa6.75□□□□□ -1.33
LDLR-210ENST00000559340 M0R2Z0 102 aa6.75□□□□□ -1.33
LDLR-210ENST00000559340 RGS13O14921 159 aa6.75□□□□□ -1.33
LDLR-210ENST00000559340 C2CD4CQ8TF44 421 aa6.75□□□□□ -1.33
LDLR-210ENST00000559340 PCNPQ8WW12 178 aaKnown RBP6.75□□□□□ -1.33
LDLR-210ENST00000559340 FAM19A4Q96LR4 140 aa6.75□□□□□ -1.33
LDLR-210ENST00000559340 ASCL2Q99929 193 aa6.75□□□□□ -1.33
LDLR-210ENST00000559340 RARRES2Q99969 163 aa6.75□□□□□ -1.33
LDLR-210ENST00000559340 TM2D3Q9BRN9 247 aa6.75□□□□□ -1.33
LDLR-210ENST00000559340 TRAV8-1A0A0A6YYK1 113 aa6.74□□□□□ -1.33
LDLR-210ENST00000559340 TRAV34A0A0B4J273 112 aa6.74□□□□□ -1.33
LDLR-210ENST00000559340 KLLNB2CW77 178 aa6.74□□□□□ -1.33
LDLR-210ENST00000559340 H7BYZ3 331 aa6.74□□□□□ -1.33
LDLR-210ENST00000559340 RNASE4P34096 147 aaKnown RBP6.74□□□□□ -1.33
LDLR-210ENST00000559340 DEFB135Q30KP9 77 aa6.74□□□□□ -1.33
LDLR-210ENST00000559340 BAGE2Q86Y30 109 aa6.74□□□□□ -1.33
LDLR-210ENST00000559340 SMIM12Q96EX1 92 aa6.74□□□□□ -1.33
LDLR-210ENST00000559340 SGK494Q96LW2 274 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms