RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 TRAV12-2A0A075B6T6 113 aa10.28□□□□□ -0.76
VIPAS39-208ENST00000556412 RBAKDNA6NC62 111 aa10.28□□□□□ -0.76
VIPAS39-208ENST00000556412 PEX7O00628 323 aa10.28□□□□□ -0.76
VIPAS39-208ENST00000556412 UBE2CO00762 179 aa10.28□□□□□ -0.76
VIPAS39-208ENST00000556412 ZNF138P52744 262 aa10.28□□□□□ -0.76
VIPAS39-208ENST00000556412 C9orf47Q6ZRZ4 202 aa10.28□□□□□ -0.76
VIPAS39-208ENST00000556412 CYB561D1Q8N8Q1 229 aa10.28□□□□□ -0.76
VIPAS39-208ENST00000556412 LINC00477Q96M19 166 aa10.28□□□□□ -0.76
VIPAS39-208ENST00000556412 CLUHP3Q96NS8 147 aa10.28□□□□□ -0.76
VIPAS39-208ENST00000556412 C1QTNF4Q9BXJ3 329 aa10.28□□□□□ -0.76
VIPAS39-208ENST00000556412 A8MTW9 85 aa10.27□□□□□ -0.77
VIPAS39-208ENST00000556412 F6UZH7 168 aa10.27□□□□□ -0.77
VIPAS39-208ENST00000556412 GIG44P09565 113 aaPredicted RBP10.27□□□□□ -0.77
VIPAS39-208ENST00000556412 BCL2P10415 239 aa10.27□□□□□ -0.77
VIPAS39-208ENST00000556412 RAB14P61106 215 aa10.27□□□□□ -0.77
VIPAS39-208ENST00000556412 ARL6IP6Q8N6S5 226 aa10.27□□□□□ -0.77
VIPAS39-208ENST00000556412 LINC00479Q96M42 142 aa10.27□□□□□ -0.77
VIPAS39-208ENST00000556412 RCHY1Q96PM5 261 aa10.27□□□□□ -0.77
VIPAS39-208ENST00000556412 IGHV3OR16-12A0A075B7B8 117 aa10.26□□□□□ -0.77
VIPAS39-208ENST00000556412 TRAV34A0A0B4J273 112 aa10.26□□□□□ -0.77
VIPAS39-208ENST00000556412 SERTM2A0A1B0GWG4 89 aa10.26□□□□□ -0.77
VIPAS39-208ENST00000556412 TSPOP30536 169 aa10.26□□□□□ -0.77
VIPAS39-208ENST00000556412 LEPP41159 167 aa10.26□□□□□ -0.77
VIPAS39-208ENST00000556412 CDKN1BP46527 198 aa10.26□□□□□ -0.77
VIPAS39-208ENST00000556412 CCDC28AQ8IWP9 274 aa10.26□□□□□ -0.77
VIPAS39-208ENST00000556412 HIST1H2BAQ96A08 127 aa10.26□□□□□ -0.77
VIPAS39-208ENST00000556412 SPATA25Q9BR10 227 aa10.26□□□□□ -0.77
VIPAS39-208ENST00000556412 ZMAT4Q9H898 229 aa10.26□□□□□ -0.77
VIPAS39-208ENST00000556412 ZNF492Q9P255 531 aa10.26□□□□□ -0.77
VIPAS39-208ENST00000556412 SCO2A0A1W2PP80 73 aa10.26□□□□□ -0.77
VIPAS39-208ENST00000556412 NMBP08949 121 aa10.26□□□□□ -0.77
VIPAS39-208ENST00000556412 IFITM2Q01629 132 aa10.26□□□□□ -0.77
VIPAS39-208ENST00000556412 MEF2BQ02080 365 aaPredicted RBP10.26□□□□□ -0.77
VIPAS39-208ENST00000556412 Q6ZWC4 215 aa10.26□□□□□ -0.77
VIPAS39-208ENST00000556412 PRNTQ86SH4 94 aa10.26□□□□□ -0.77
VIPAS39-208ENST00000556412 LYPD6BQ8NI32 183 aa10.26□□□□□ -0.77
VIPAS39-208ENST00000556412 RARRES2Q99969 163 aa10.26□□□□□ -0.77
VIPAS39-208ENST00000556412 VAX2Q9UIW0 290 aa10.26□□□□□ -0.77
VIPAS39-208ENST00000556412 SPRY2O43597 315 aa10.25□□□□□ -0.77
VIPAS39-208ENST00000556412 INSP01308 110 aa10.25□□□□□ -0.77
VIPAS39-208ENST00000556412 AMBPP02760 352 aa10.25□□□□□ -0.77
VIPAS39-208ENST00000556412 AKR1C3P42330 323 aa10.25□□□□□ -0.77
VIPAS39-208ENST00000556412 UBE2G1P62253 170 aa10.25□□□□□ -0.77
VIPAS39-208ENST00000556412 KIR3DS1Q14943 382 aa10.25□□□□□ -0.77
VIPAS39-208ENST00000556412 ZNF767PQ75MW2 155 aa10.25□□□□□ -0.77
VIPAS39-208ENST00000556412 TCEAL7Q9BRU2 100 aa10.25□□□□□ -0.77
VIPAS39-208ENST00000556412 EIF5A2Q9GZV4 153 aaKnown RBP10.25□□□□□ -0.77
VIPAS39-208ENST00000556412 LOC102723971A0A1B0GUV8 181 aa10.24□□□□□ -0.77
VIPAS39-208ENST00000556412 RBFOX3A6NFN3 312 aa10.24□□□□□ -0.77
VIPAS39-208ENST00000556412 FLI1Q01543 452 aaPredicted RBP10.24□□□□□ -0.77
VIPAS39-208ENST00000556412 TOR2AQ5JU69 321 aa10.24□□□□□ -0.77
VIPAS39-208ENST00000556412 ODF3Q96PU9 254 aa10.24□□□□□ -0.77
VIPAS39-208ENST00000556412 TM2D3Q9BRN9 247 aa10.24□□□□□ -0.77
VIPAS39-208ENST00000556412 NDFIP1Q9BT67 221 aa10.24□□□□□ -0.77
VIPAS39-208ENST00000556412 TMEM208Q9BTX3 173 aa10.24□□□□□ -0.77
VIPAS39-208ENST00000556412 PSG8Q9UQ74 426 aa10.24□□□□□ -0.77
VIPAS39-208ENST00000556412 CRXO43186 299 aaPredicted RBP10.23□□□□□ -0.77
VIPAS39-208ENST00000556412 GPX1P07203 203 aa10.23□□□□□ -0.77
VIPAS39-208ENST00000556412 RNASE4P34096 147 aaKnown RBP10.23□□□□□ -0.77
VIPAS39-208ENST00000556412 TAGLN2P37802 199 aaKnown RBP10.23□□□□□ -0.77
VIPAS39-208ENST00000556412 PMS2P11Q13670 270 aa10.23□□□□□ -0.77
VIPAS39-208ENST00000556412 GFI1BQ5VTD9 330 aa10.23□□□□□ -0.77
VIPAS39-208ENST00000556412 TMEM75Q8N9X5 138 aa10.23□□□□□ -0.77
VIPAS39-208ENST00000556412 RNF183Q96D59 192 aa10.23□□□□□ -0.77
VIPAS39-208ENST00000556412 IGF2BP2-AS1Q96M15 143 aa10.23□□□□□ -0.77
VIPAS39-208ENST00000556412 TRAV12-3A0A0B4J271 114 aa10.23□□□□□ -0.77
VIPAS39-208ENST00000556412 IGLV2-11P01706 119 aa10.23□□□□□ -0.77
VIPAS39-208ENST00000556412 NHLRC4P0CG21 123 aaPredicted RBP10.23□□□□□ -0.77
VIPAS39-208ENST00000556412 BTN1A1Q13410 526 aa10.23□□□□□ -0.77
VIPAS39-208ENST00000556412 TXNDC17Q9BRA2 123 aa10.23□□□□□ -0.77
VIPAS39-208ENST00000556412 OVOL2Q9BRP0 275 aa10.23□□□□□ -0.77
VIPAS39-208ENST00000556412 TREM1Q9NP99 234 aa10.23□□□□□ -0.77
VIPAS39-208ENST00000556412 GOLT1BQ9Y3E0 138 aa10.23□□□□□ -0.77
VIPAS39-208ENST00000556412 PDE6DO43924 150 aa10.22□□□□□ -0.77
VIPAS39-208ENST00000556412 ATP6V1G1O75348 118 aa10.22□□□□□ -0.77
VIPAS39-208ENST00000556412 ZFAND2AQ8N6M9 145 aa10.22□□□□□ -0.77
VIPAS39-208ENST00000556412 CSNK1G2-AS1Q8NCQ2 148 aa10.22□□□□□ -0.77
VIPAS39-208ENST00000556412 OR11H2Q8NH07 326 aa10.22□□□□□ -0.77
VIPAS39-208ENST00000556412 FAM19A4Q96LR4 140 aa10.22□□□□□ -0.77
VIPAS39-208ENST00000556412 HTN1P15515 57 aa10.21□□□□□ -0.77
VIPAS39-208ENST00000556412 CRISP2P16562 243 aa10.21□□□□□ -0.77
VIPAS39-208ENST00000556412 CEBPGP53567 150 aa10.21□□□□□ -0.77
VIPAS39-208ENST00000556412 ZNF506Q5JVG8 444 aa10.21□□□□□ -0.77
VIPAS39-208ENST00000556412 PRR9Q5T870 116 aa10.21□□□□□ -0.77
VIPAS39-208ENST00000556412 Q86TA4 180 aa10.21□□□□□ -0.77
VIPAS39-208ENST00000556412 TVP23CQ96ET8 276 aa10.21□□□□□ -0.77
VIPAS39-208ENST00000556412 FMC1Q96HJ9 113 aa10.21□□□□□ -0.77
VIPAS39-208ENST00000556412 MED9Q9NWA0 146 aa10.21□□□□□ -0.77
VIPAS39-208ENST00000556412 TP53TG1Q9Y2A0 90 aa10.21□□□□□ -0.77
VIPAS39-208ENST00000556412 C7orf71A4D174 169 aa10.21□□□□□ -0.78
VIPAS39-208ENST00000556412 FBLL1A6NHQ2 334 aaKnown RBP10.21□□□□□ -0.78
VIPAS39-208ENST00000556412 RBMY1A1P0DJD3 496 aaKnown RBP10.21□□□□□ -0.78
VIPAS39-208ENST00000556412 RBMY1CP0DJD4 496 aa10.21□□□□□ -0.78
VIPAS39-208ENST00000556412 RBMY1FQ15415 496 aaKnown RBP10.21□□□□□ -0.78
VIPAS39-208ENST00000556412 C1orf158Q8N1D5 194 aa10.21□□□□□ -0.78
VIPAS39-208ENST00000556412 C2CD4CQ8TF44 421 aa10.21□□□□□ -0.78
VIPAS39-208ENST00000556412 C8orf49Q96NF6 230 aa10.21□□□□□ -0.78
VIPAS39-208ENST00000556412 LINC01587Q99440 93 aa10.21□□□□□ -0.78
VIPAS39-208ENST00000556412 NIPSNAP3BQ9BS92 247 aa10.21□□□□□ -0.78
VIPAS39-208ENST00000556412 DERL1Q9BUN8 251 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms