RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 LINC00311Q8N616 119 aa11.74□□□□□ -0.53
CUX1-215ENST00000556210 KAAG1Q9UBP8 84 aa11.74□□□□□ -0.53
CUX1-215ENST00000556210 IGF2BP2-AS1Q96M15 143 aa11.73□□□□□ -0.53
CUX1-215ENST00000556210 IGLV2-8P01709 118 aa11.73□□□□□ -0.53
CUX1-215ENST00000556210 FABP2P12104 132 aa11.73□□□□□ -0.53
CUX1-215ENST00000556210 ZNF491Q8N8L2 437 aa11.73□□□□□ -0.53
CUX1-215ENST00000556210 LRBAP50851 2863 aa11.73□□□□□ -0.53
CUX1-215ENST00000556210 IFI27P40305 119 aaPredicted RBP11.73□□□□□ -0.53
CUX1-215ENST00000556210 FAM74A4Q5TZK3 123 aa11.73□□□□□ -0.53
CUX1-215ENST00000556210 SHANK2-AS3Q9BTD1 123 aa11.73□□□□□ -0.53
CUX1-215ENST00000556210 TRBV19A0A075B6N1 114 aa11.72□□□□□ -0.53
CUX1-215ENST00000556210 IGLV1-47P01700 117 aa11.72□□□□□ -0.53
CUX1-215ENST00000556210 SMIM17P0DL12 118 aa11.72□□□□□ -0.53
CUX1-215ENST00000556210 CCL19Q99731 98 aa11.72□□□□□ -0.53
CUX1-215ENST00000556210 IGHV2-70DA0A0C4DH43 119 aa11.72□□□□□ -0.53
CUX1-215ENST00000556210 SH2D1AO60880 128 aa11.72□□□□□ -0.53
CUX1-215ENST00000556210 BVES-AS1Q5T3Y7 98 aa11.72□□□□□ -0.53
CUX1-215ENST00000556210 SMIM12Q96EX1 92 aa11.72□□□□□ -0.53
CUX1-215ENST00000556210 ACANP16112 2415 aa11.72□□□□□ -0.53
CUX1-215ENST00000556210 J3QR89 54 aa11.72□□□□□ -0.53
CUX1-215ENST00000556210 ZNF562Q6V9R5 426 aa11.72□□□□□ -0.53
CUX1-215ENST00000556210 MS4A6AQ9H2W1 248 aa11.72□□□□□ -0.53
CUX1-215ENST00000556210 FCN3O75636 299 aa11.71□□□□□ -0.53
CUX1-215ENST00000556210 GDF5OSQ5U4N7 250 aa11.71□□□□□ -0.53
CUX1-215ENST00000556210 Q71RC1 249 aaPredicted RBP11.71□□□□□ -0.53
CUX1-215ENST00000556210 VGLL1Q99990 258 aa11.71□□□□□ -0.53
CUX1-215ENST00000556210 K7EIM0 57 aa11.71□□□□□ -0.53
CUX1-215ENST00000556210 PSG3Q16557 428 aa11.71□□□□□ -0.53
CUX1-215ENST00000556210 EEF1AKMT3Q96AZ1 226 aa11.71□□□□□ -0.53
CUX1-215ENST00000556210 SPCS1Q9Y6A9 102 aa11.71□□□□□ -0.53
CUX1-215ENST00000556210 CD5LO43866 347 aa11.71□□□□□ -0.54
CUX1-215ENST00000556210 ZFP36P26651 326 aaKnown RBP11.71□□□□□ -0.54
CUX1-215ENST00000556210 ADORA2A-AS1P86434 159 aa11.71□□□□□ -0.54
CUX1-215ENST00000556210 ORMDL3Q8N138 153 aa11.71□□□□□ -0.54
CUX1-215ENST00000556210 TMEM160Q9NX00 188 aa11.71□□□□□ -0.54
CUX1-215ENST00000556210 THAP8Q8NA92 274 aa11.7□□□□□ -0.54
CUX1-215ENST00000556210 GTSF1Q8WW33 167 aa11.7□□□□□ -0.54
CUX1-215ENST00000556210 OR2K2Q8NGT1 345 aa11.7□□□□□ -0.54
CUX1-215ENST00000556210 WIPF2Q8TF74 440 aaPredicted RBP11.7□□□□□ -0.54
CUX1-215ENST00000556210 NRGNQ92686 78 aa11.7□□□□□ -0.54
CUX1-215ENST00000556210 TRAV8-6A0A0B4J262 113 aa11.7□□□□□ -0.54
CUX1-215ENST00000556210 TEX22C9J3V5 150 aa11.7□□□□□ -0.54
CUX1-215ENST00000556210 DEFB1P60022 68 aa11.7□□□□□ -0.54
CUX1-215ENST00000556210 RELNP78509 3460 aa11.7□□□□□ -0.54
CUX1-215ENST00000556210 H3BUX3 64 aa11.7□□□□□ -0.54
CUX1-215ENST00000556210 CDKN1BP46527 198 aa11.7□□□□□ -0.54
CUX1-215ENST00000556210 Q8N976 141 aa11.7□□□□□ -0.54
CUX1-215ENST00000556210 PHLDA3Q9Y5J5 127 aa11.7□□□□□ -0.54
CUX1-215ENST00000556210 KLF5Q13887 457 aaPredicted RBP11.69□□□□□ -0.54
CUX1-215ENST00000556210 C11orf44Q8N8P7 122 aa11.69□□□□□ -0.54
CUX1-215ENST00000556210 C2orf70A6NJV1 201 aa11.69□□□□□ -0.54
CUX1-215ENST00000556210 FABP5P3A8MUU1 101 aa11.69□□□□□ -0.54
CUX1-215ENST00000556210 GP9P14770 177 aa11.69□□□□□ -0.54
CUX1-215ENST00000556210 MAP1LC3AQ9H492 121 aa11.69□□□□□ -0.54
CUX1-215ENST00000556210 FAM231BA6NCW3 169 aa11.69□□□□□ -0.54
CUX1-215ENST00000556210 EFNA4P52798 201 aa11.69□□□□□ -0.54
CUX1-215ENST00000556210 DYNAPQ8N1N2 210 aa11.69□□□□□ -0.54
CUX1-215ENST00000556210 OR10J6PQ8NGY7 276 aa11.69□□□□□ -0.54
CUX1-215ENST00000556210 H3BVH4 76 aa11.68□□□□□ -0.54
CUX1-215ENST00000556210 TGFAP01135 160 aa11.68□□□□□ -0.54
CUX1-215ENST00000556210 SEC11AP67812 179 aa11.68□□□□□ -0.54
CUX1-215ENST00000556210 I3L2K1 104 aa11.68□□□□□ -0.54
CUX1-215ENST00000556210 RNASE4P34096 147 aaKnown RBP11.68□□□□□ -0.54
CUX1-215ENST00000556210 IGF2-ASQ6U949 168 aa11.68□□□□□ -0.54
CUX1-215ENST00000556210 PIMREGQ9BSJ6 248 aa11.68□□□□□ -0.54
CUX1-215ENST00000556210 LINC01548A6NM66 108 aa11.67□□□□□ -0.54
CUX1-215ENST00000556210 MSRB1Q9NZV6 116 aa11.67□□□□□ -0.54
CUX1-215ENST00000556210 FN1P02751 2386 aaKnown RBP11.67□□□□□ -0.54
CUX1-215ENST00000556210 LEPP41159 167 aa11.66□□□□□ -0.54
CUX1-215ENST00000556210 FOXC2Q99958 501 aa11.66□□□□□ -0.54
CUX1-215ENST00000556210 A0A0G2JLM5 398 aa11.66□□□□□ -0.54
CUX1-215ENST00000556210 TAX1BP3O14907 124 aa11.66□□□□□ -0.54
CUX1-215ENST00000556210 NPFFO15130 113 aa11.66□□□□□ -0.54
CUX1-215ENST00000556210 RBX1P62877 108 aa11.66□□□□□ -0.54
CUX1-215ENST00000556210 IL17RELQ6ZVW7 336 aa11.66□□□□□ -0.54
CUX1-215ENST00000556210 DEFB125Q8N687 156 aa11.66□□□□□ -0.54
CUX1-215ENST00000556210 ZNF502Q8TBZ5 544 aa11.66□□□□□ -0.54
CUX1-215ENST00000556210 MYOZ3Q8TDC0 251 aa11.66□□□□□ -0.54
CUX1-215ENST00000556210 SMIM13P0DJ93 91 aa11.66□□□□□ -0.54
CUX1-215ENST00000556210 IFI27L1Q96BM0 104 aa11.66□□□□□ -0.54
CUX1-215ENST00000556210 JKAMPQ9P055 326 aa11.66□□□□□ -0.54
CUX1-215ENST00000556210 TRAV26-2A0A0B4J265 109 aa11.65□□□□□ -0.54
CUX1-215ENST00000556210 HBDP02042 147 aa11.65□□□□□ -0.54
CUX1-215ENST00000556210 PAX8Q06710 450 aa11.65□□□□□ -0.54
CUX1-215ENST00000556210 KIR3DS1Q14943 382 aa11.65□□□□□ -0.54
CUX1-215ENST00000556210 SFTA2Q6UW10 78 aa11.65□□□□□ -0.54
CUX1-215ENST00000556210 TRAV41A0A0B4J266 112 aa11.65□□□□□ -0.54
CUX1-215ENST00000556210 PRSS57Q6UWY2 283 aa11.65□□□□□ -0.54
CUX1-215ENST00000556210 M0R1W7 72 aa11.64□□□□□ -0.55
CUX1-215ENST00000556210 GATA1P15976 413 aaPredicted RBP11.64□□□□□ -0.55
CUX1-215ENST00000556210 IGHV3OR16-12A0A075B7B8 117 aa11.64□□□□□ -0.55
CUX1-215ENST00000556210 H3BRN7 92 aa11.64□□□□□ -0.55
CUX1-215ENST00000556210 LTAP01374 205 aa11.64□□□□□ -0.55
CUX1-215ENST00000556210 CT83Q5H943 113 aa11.64□□□□□ -0.55
CUX1-215ENST00000556210 ZNF492Q9P255 531 aa11.64□□□□□ -0.55
CUX1-215ENST00000556210 NDUFA3O95167 84 aa11.63□□□□□ -0.55
CUX1-215ENST00000556210 COX8AP10176 69 aa11.63□□□□□ -0.55
CUX1-215ENST00000556210 SCGB1D4Q6XE38 83 aa11.63□□□□□ -0.55
CUX1-215ENST00000556210 NHP2Q9NX24 153 aaKnown RBP11.63□□□□□ -0.55
CUX1-215ENST00000556210 PRAC2D3DTV9 90 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms