RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 HMGB3O15347 200 aaKnown RBP9.77□□□□□ -0.85
SHMT2-219ENST00000555563 ARPC5O15511 151 aa9.77□□□□□ -0.85
SHMT2-219ENST00000555563 HTN1P15515 57 aa9.77□□□□□ -0.85
SHMT2-219ENST00000555563 CDC34P49427 236 aaPredicted RBP9.77□□□□□ -0.85
SHMT2-219ENST00000555563 RANP62826 216 aaKnown RBP9.77□□□□□ -0.85
SHMT2-219ENST00000555563 PQLC2Q6ZP29 291 aa9.77□□□□□ -0.85
SHMT2-219ENST00000555563 C9orf47Q6ZRZ4 202 aa9.77□□□□□ -0.85
SHMT2-219ENST00000555563 FAM19A4Q96LR4 140 aa9.77□□□□□ -0.85
SHMT2-219ENST00000555563 VGLL1Q99990 258 aa9.77□□□□□ -0.85
SHMT2-219ENST00000555563 BORCS7-ASMTA0A0B4J1R7 106 aa9.76□□□□□ -0.85
SHMT2-219ENST00000555563 TRAV12-3A0A0B4J271 114 aa9.76□□□□□ -0.85
SHMT2-219ENST00000555563 KLLNB2CW77 178 aa9.76□□□□□ -0.85
SHMT2-219ENST00000555563 TCTAP57738 103 aa9.76□□□□□ -0.85
SHMT2-219ENST00000555563 LYPD1Q8N2G4 141 aa9.76□□□□□ -0.85
SHMT2-219ENST00000555563 RNASE8Q8TDE3 154 aaKnown RBP9.76□□□□□ -0.85
SHMT2-219ENST00000555563 C16orf74Q96GX8 76 aa9.76□□□□□ -0.85
SHMT2-219ENST00000555563 LINC00477Q96M19 166 aa9.76□□□□□ -0.85
SHMT2-219ENST00000555563 APLNQ9ULZ1 77 aa9.76□□□□□ -0.85
SHMT2-219ENST00000555563 SLC25A5P05141 298 aaKnown RBP9.75□□□□□ -0.85
SHMT2-219ENST00000555563 ARL14EPLP0DKL9 152 aa9.75□□□□□ -0.85
SHMT2-219ENST00000555563 CRISP2P16562 243 aa9.75□□□□□ -0.85
SHMT2-219ENST00000555563 CSN1S1P47710 185 aa9.75□□□□□ -0.85
SHMT2-219ENST00000555563 DAD1P61803 113 aa9.75□□□□□ -0.85
SHMT2-219ENST00000555563 SERF2P84101 59 aa9.75□□□□□ -0.85
SHMT2-219ENST00000555563 TMEM78Q5T7P6 136 aa9.75□□□□□ -0.85
SHMT2-219ENST00000555563 ZFAND2AQ8N6M9 145 aa9.75□□□□□ -0.85
SHMT2-219ENST00000555563 Q8TAT8 98 aa9.75□□□□□ -0.85
SHMT2-219ENST00000555563 TMEM263Q8WUH6 116 aaKnown RBP9.75□□□□□ -0.85
SHMT2-219ENST00000555563 C7orf71A4D174 169 aa9.74□□□□□ -0.85
SHMT2-219ENST00000555563 LYRM9A8MSI8 78 aa9.74□□□□□ -0.85
SHMT2-219ENST00000555563 MBP02144 154 aa9.74□□□□□ -0.85
SHMT2-219ENST00000555563 HTN3P15516 51 aa9.74□□□□□ -0.85
SHMT2-219ENST00000555563 CD300CQ08708 224 aa9.74□□□□□ -0.85
SHMT2-219ENST00000555563 BTN1A1Q13410 526 aa9.74□□□□□ -0.85
SHMT2-219ENST00000555563 PRR9Q5T870 116 aa9.74□□□□□ -0.85
SHMT2-219ENST00000555563 LGALS9CQ6DKI2 356 aa9.74□□□□□ -0.85
SHMT2-219ENST00000555563 RAB24Q969Q5 203 aa9.74□□□□□ -0.85
SHMT2-219ENST00000555563 GNPNAT1Q96EK6 184 aaPredicted RBP9.74□□□□□ -0.85
SHMT2-219ENST00000555563 OTORQ9NRC9 128 aa9.74□□□□□ -0.85
SHMT2-219ENST00000555563 ZNF492Q9P255 531 aa9.74□□□□□ -0.85
SHMT2-219ENST00000555563 ALMS1Q8TCU4 4167 aa9.74□□□□□ -0.85
SHMT2-219ENST00000555563 RBAKDNA6NC62 111 aa9.73□□□□□ -0.85
SHMT2-219ENST00000555563 DIRC3C9JPN6 131 aa9.73□□□□□ -0.85
SHMT2-219ENST00000555563 STAG3L2P0CL84 134 aa9.73□□□□□ -0.85
SHMT2-219ENST00000555563 STAG3L3P0CL85 134 aa9.73□□□□□ -0.85
SHMT2-219ENST00000555563 DEFB130BP0DP73 79 aa9.73□□□□□ -0.85
SHMT2-219ENST00000555563 DEFB130AP0DP74 79 aa9.73□□□□□ -0.85
SHMT2-219ENST00000555563 ZNF138P52744 262 aa9.73□□□□□ -0.85
SHMT2-219ENST00000555563 ZNF493Q6ZR52 646 aa9.73□□□□□ -0.85
SHMT2-219ENST00000555563 HYLS1Q96M11 299 aa9.73□□□□□ -0.85
SHMT2-219ENST00000555563 PYGO2Q9BRQ0 406 aa9.73□□□□□ -0.85
SHMT2-219ENST00000555563 RPH3ALQ9UNE2 315 aa9.73□□□□□ -0.85
SHMT2-219ENST00000555563 PGPA6NDG6 321 aa9.72□□□□□ -0.85
SHMT2-219ENST00000555563 NMBP08949 121 aa9.72□□□□□ -0.85
SHMT2-219ENST00000555563 GCHFRP30047 84 aa9.72□□□□□ -0.85
SHMT2-219ENST00000555563 RNASE4P34096 147 aaKnown RBP9.72□□□□□ -0.85
SHMT2-219ENST00000555563 SSX7Q7RTT5 188 aa9.72□□□□□ -0.85
SHMT2-219ENST00000555563 CCDC28AQ8IWP9 274 aa9.72□□□□□ -0.85
SHMT2-219ENST00000555563 CMTM2Q8TAZ6 248 aa9.72□□□□□ -0.85
SHMT2-219ENST00000555563 RXFP4Q8TDU9 374 aa9.72□□□□□ -0.85
SHMT2-219ENST00000555563 NOP10Q9NPE3 64 aaKnown RBP9.72□□□□□ -0.85
SHMT2-219ENST00000555563 CYTL1Q9NRR1 136 aa9.72□□□□□ -0.85
SHMT2-219ENST00000555563 TIMM8BQ9Y5J9 83 aaPredicted RBP9.72□□□□□ -0.85
SHMT2-219ENST00000555563 TRBV7-9A0A0J9YWB2 115 aa9.71□□□□□ -0.86
SHMT2-219ENST00000555563 TAAR5O14804 337 aa9.71□□□□□ -0.86
SHMT2-219ENST00000555563 ZNF324O75467 553 aaPredicted RBP9.71□□□□□ -0.86
SHMT2-219ENST00000555563 GPX1P07203 203 aa9.71□□□□□ -0.86
SHMT2-219ENST00000555563 ZNF345Q14585 488 aa9.71□□□□□ -0.86
SHMT2-219ENST00000555563 FAM74A1Q5RGS3 127 aa9.71□□□□□ -0.86
SHMT2-219ENST00000555563 OR11H4Q8NGC9 324 aa9.71□□□□□ -0.86
SHMT2-219ENST00000555563 NDUFAF3Q9BU61 184 aa9.71□□□□□ -0.86
SHMT2-219ENST00000555563 ACTR3CQ9C0K3 210 aaPredicted RBP9.71□□□□□ -0.86
SHMT2-219ENST00000555563 CXorf1O96002 111 aa9.7□□□□□ -0.86
SHMT2-219ENST00000555563 GNG5P63218 68 aa9.7□□□□□ -0.86
SHMT2-219ENST00000555563 ZNF726P1Q15940 193 aa9.7□□□□□ -0.86
SHMT2-219ENST00000555563 Q6ZQT7 251 aa9.7□□□□□ -0.86
SHMT2-219ENST00000555563 GOLT1AQ6ZVE7 132 aa9.7□□□□□ -0.86
SHMT2-219ENST00000555563 KCNRGQ8N5I3 272 aa9.7□□□□□ -0.86
SHMT2-219ENST00000555563 SUN5Q8TC36 379 aa9.7□□□□□ -0.86
SHMT2-219ENST00000555563 AKR1C8PQ5T2L2 129 aa9.69□□□□□ -0.86
SHMT2-219ENST00000555563 TMEM88Q6PEY1 159 aa9.69□□□□□ -0.86
SHMT2-219ENST00000555563 C11orf72Q8NBR9 251 aa9.69□□□□□ -0.86
SHMT2-219ENST00000555563 ZNF680Q8NEM1 530 aa9.69□□□□□ -0.86
SHMT2-219ENST00000555563 FAM210BQ96KR6 192 aa9.69□□□□□ -0.86
SHMT2-219ENST00000555563 ARPC5LQ9BPX5 153 aa9.69□□□□□ -0.86
SHMT2-219ENST00000555563 LINC00467Q9BRT7 94 aa9.69□□□□□ -0.86
SHMT2-219ENST00000555563 PLECQ15149 4684 aaKnown RBP9.68□□□□□ -0.86
SHMT2-219ENST00000555563 TRAV8-1A0A0A6YYK1 113 aa9.68□□□□□ -0.86
SHMT2-219ENST00000555563 CTXND1A0A1B0GTU2 59 aa9.68□□□□□ -0.86
SHMT2-219ENST00000555563 CBY3A6NI87 242 aa9.68□□□□□ -0.86
SHMT2-219ENST00000555563 HMSDA8MTL9 139 aa9.68□□□□□ -0.86
SHMT2-219ENST00000555563 SNURFLB1AK76 121 aa9.68□□□□□ -0.86
SHMT2-219ENST00000555563 GGTLC3B5MD39 225 aa9.68□□□□□ -0.86
SHMT2-219ENST00000555563 RGS13O14921 159 aa9.68□□□□□ -0.86
SHMT2-219ENST00000555563 IQCF2Q8IXL9 164 aa9.68□□□□□ -0.86
SHMT2-219ENST00000555563 EIF4E3Q8N5X7 224 aaKnown RBP9.68□□□□□ -0.86
SHMT2-219ENST00000555563 ARL6IP6Q8N6S5 226 aa9.68□□□□□ -0.86
SHMT2-219ENST00000555563 LINC00612Q8N6U2 182 aa9.68□□□□□ -0.86
SHMT2-219ENST00000555563 C5orf17Q8NAS9 161 aa9.68□□□□□ -0.86
SHMT2-219ENST00000555563 TMED6Q8WW62 240 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms