RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 MGAMO43451 1857 aa2.53□□□□□ -2
SCFD1-208ENST00000553278 VWDEQ8N2E2 1590 aa2.53□□□□□ -2.01
SCFD1-208ENST00000553278 DISP2A7MBM2 1401 aa2.52□□□□□ -2.01
SCFD1-208ENST00000553278 ZNF727A8MUV8 499 aa2.52□□□□□ -2.01
SCFD1-208ENST00000553278 CCL4P13236 92 aa2.52□□□□□ -2.01
SCFD1-208ENST00000553278 ETV6P41212 452 aa2.52□□□□□ -2.01
SCFD1-208ENST00000553278 GLYATL3Q5SZD4 288 aa2.52□□□□□ -2.01
SCFD1-208ENST00000553278 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.52□□□□□ -2.01
SCFD1-208ENST00000553278 TEN1Q86WV5 123 aa2.52□□□□□ -2.01
SCFD1-208ENST00000553278 LINC00269Q8N2A0 174 aa2.52□□□□□ -2.01
SCFD1-208ENST00000553278 PATE1Q8WXA2 126 aa2.52□□□□□ -2.01
SCFD1-208ENST00000553278 ORMDL1Q9P0S3 153 aa2.52□□□□□ -2.01
SCFD1-208ENST00000553278 A0A096LPI6 279 aa2.51□□□□□ -2.01
SCFD1-208ENST00000553278 CCL16O15467 120 aa2.51□□□□□ -2.01
SCFD1-208ENST00000553278 HLA-DRB4P13762 266 aa2.51□□□□□ -2.01
SCFD1-208ENST00000553278 AKR1D1P51857 326 aa2.51□□□□□ -2.01
SCFD1-208ENST00000553278 KRTAP6-3Q3LI67 103 aa2.51□□□□□ -2.01
SCFD1-208ENST00000553278 KRTAP26-1Q6PEX3 210 aa2.51□□□□□ -2.01
SCFD1-208ENST00000553278 TMEM91Q6ZNR0 172 aa2.51□□□□□ -2.01
SCFD1-208ENST00000553278 OR10AG1Q8NH19 301 aa2.51□□□□□ -2.01
SCFD1-208ENST00000553278 HLA-DRB4X5D2U9 266 aa2.51□□□□□ -2.01
SCFD1-208ENST00000553278 CEP192Q8TEP8 1941 aa2.5□□□□□ -2.01
SCFD1-208ENST00000553278 FREM3P0C091 2139 aa2.5□□□□□ -2.01
SCFD1-208ENST00000553278 C3orf85A0A1B0GTC6 90 aa2.5□□□□□ -2.01
SCFD1-208ENST00000553278 PNMA8CA0A1B0GUJ8 204 aa2.5□□□□□ -2.01
SCFD1-208ENST00000553278 F8W1H4 67 aa2.5□□□□□ -2.01
SCFD1-208ENST00000553278 KRTAP5-8O75690 187 aa2.5□□□□□ -2.01
SCFD1-208ENST00000553278 PCBD1P61457 104 aa2.5□□□□□ -2.01
SCFD1-208ENST00000553278 CASC2Q6XLA1 102 aa2.5□□□□□ -2.01
SCFD1-208ENST00000553278 ZNF563Q8TA94 476 aa2.5□□□□□ -2.01
SCFD1-208ENST00000553278 LINC00052Q96N35 136 aa2.5□□□□□ -2.01
SCFD1-208ENST00000553278 LAMB4A4D0S4 1761 aa2.5□□□□□ -2.01
SCFD1-208ENST00000553278 COL24A1Q17RW2 1714 aa2.5□□□□□ -2.01
SCFD1-208ENST00000553278 COL1A1P02452 1464 aaPredicted RBP2.5□□□□□ -2.01
SCFD1-208ENST00000553278 TSPAN19P0C672 248 aa2.49□□□□□ -2.01
SCFD1-208ENST00000553278 IGLC6P0CF74 106 aa2.49□□□□□ -2.01
SCFD1-208ENST00000553278 CKS2P33552 79 aa2.49□□□□□ -2.01
SCFD1-208ENST00000553278 NCS1P62166 190 aa2.49□□□□□ -2.01
SCFD1-208ENST00000553278 SNRPD3P62318 126 aaKnown RBP2.49□□□□□ -2.01
SCFD1-208ENST00000553278 ASB16-AS1Q495Z4 193 aa2.49□□□□□ -2.01
SCFD1-208ENST00000553278 CTAGE3PQ8IX95 158 aa2.49□□□□□ -2.01
SCFD1-208ENST00000553278 C15orf53Q8NAA6 179 aa2.49□□□□□ -2.01
SCFD1-208ENST00000553278 HEATR1Q9H583 2144 aaKnown RBP2.49□□□□□ -2.01
SCFD1-208ENST00000553278 METTL1Q9UBP6 276 aaKnown RBP2.49□□□□□ -2.01
SCFD1-208ENST00000553278 TNFSF18Q9UNG2 199 aa2.49□□□□□ -2.01
SCFD1-208ENST00000553278 SNURFQ9Y675 71 aa2.49□□□□□ -2.01
SCFD1-208ENST00000553278 KIAA1549Q9HCM3 1950 aa2.49□□□□□ -2.01
SCFD1-208ENST00000553278 LAMB2P55268 1798 aa2.49□□□□□ -2.01
SCFD1-208ENST00000553278 RFX7Q2KHR2 1363 aa2.49□□□□□ -2.01
SCFD1-208ENST00000553278 CDK5RAP2Q96SN8 1893 aa2.48□□□□□ -2.01
SCFD1-208ENST00000553278 PLXNA4Q9HCM2 1894 aa2.48□□□□□ -2.01
SCFD1-208ENST00000553278 K7ERU9 68 aa2.48□□□□□ -2.01
SCFD1-208ENST00000553278 COX7CP15954 63 aa2.48□□□□□ -2.01
SCFD1-208ENST00000553278 KRTAP12-1P59990 96 aa2.48□□□□□ -2.01
SCFD1-208ENST00000553278 MIR22HGQ0VDD5 57 aa2.48□□□□□ -2.01
SCFD1-208ENST00000553278 FOXI2Q6ZQN5 318 aa2.48□□□□□ -2.01
SCFD1-208ENST00000553278 CIB3Q96Q77 187 aaPredicted RBP2.48□□□□□ -2.01
SCFD1-208ENST00000553278 CDC42SE1Q9NRR8 79 aa2.48□□□□□ -2.01
SCFD1-208ENST00000553278 COMMD3Q9UBI1 195 aa2.48□□□□□ -2.01
SCFD1-208ENST00000553278 MPC1Q9Y5U8 109 aa2.48□□□□□ -2.01
SCFD1-208ENST00000553278 LOC107984156A0A0G2JMH3 177 aa2.47□□□□□ -2.01
SCFD1-208ENST00000553278 H3BRM9 83 aa2.47□□□□□ -2.01
SCFD1-208ENST00000553278 SULT1C4O75897 302 aa2.47□□□□□ -2.01
SCFD1-208ENST00000553278 NCR2O95944 276 aa2.47□□□□□ -2.01
SCFD1-208ENST00000553278 KDELR1P24390 212 aa2.47□□□□□ -2.01
SCFD1-208ENST00000553278 ARL17AQ8IVW1 177 aa2.47□□□□□ -2.01
SCFD1-208ENST00000553278 C10orf111Q8N326 155 aa2.47□□□□□ -2.01
SCFD1-208ENST00000553278 FAM19A2Q8N3H0 131 aa2.47□□□□□ -2.01
SCFD1-208ENST00000553278 OTOSQ8NHW6 89 aa2.47□□□□□ -2.01
SCFD1-208ENST00000553278 KDM5CP41229 1560 aa2.47□□□□□ -2.01
SCFD1-208ENST00000553278 BICRAQ9NZM4 1560 aa2.47□□□□□ -2.01
SCFD1-208ENST00000553278 HIVEP2P31629 2446 aa2.47□□□□□ -2.01
SCFD1-208ENST00000553278 INTS1Q8N201 2190 aaKnown RBP2.46□□□□□ -2.02
SCFD1-208ENST00000553278 TRBV6-4A0A1B0GX49 114 aa2.46□□□□□ -2.02
SCFD1-208ENST00000553278 IFITM5A6NNB3 132 aa2.46□□□□□ -2.02
SCFD1-208ENST00000553278 K7EP13 123 aa2.46□□□□□ -2.02
SCFD1-208ENST00000553278 CD14P08571 375 aa2.46□□□□□ -2.02
SCFD1-208ENST00000553278 LINC00694P0DN24 101 aa2.46□□□□□ -2.02
SCFD1-208ENST00000553278 OR10AC1Q8NH08 325 aa2.46□□□□□ -2.02
SCFD1-208ENST00000553278 ERG28Q9UKR5 140 aa2.46□□□□□ -2.02
SCFD1-208ENST00000553278 DNAJC15Q9Y5T4 150 aa2.46□□□□□ -2.02
SCFD1-208ENST00000553278 MYOFQ9NZM1 2061 aa2.46□□□□□ -2.02
SCFD1-208ENST00000553278 PRG4Q92954 1404 aaPredicted RBP2.45□□□□□ -2.02
SCFD1-208ENST00000553278 RPS25P62851 125 aaKnown RBP2.45□□□□□ -2.02
SCFD1-208ENST00000553278 MPV17LQ2QL34 196 aa2.45□□□□□ -2.02
SCFD1-208ENST00000553278 SMIM7Q9BQ49 75 aa2.45□□□□□ -2.02
SCFD1-208ENST00000553278 LPAR5Q9H1C0 372 aa2.45□□□□□ -2.02
SCFD1-208ENST00000553278 CYSTM1Q9H1C7 97 aa2.45□□□□□ -2.02
SCFD1-208ENST00000553278 SLC35B3Q9H1N7 401 aa2.45□□□□□ -2.02
SCFD1-208ENST00000553278 ERCC6Q03468 1493 aa2.45□□□□□ -2.02
SCFD1-208ENST00000553278 ARFGEF3Q5TH69 2177 aa2.44□□□□□ -2.02
SCFD1-208ENST00000553278 MYH1P12882 1939 aa2.44□□□□□ -2.02
SCFD1-208ENST00000553278 CR1P17927 2039 aa2.44□□□□□ -2.02
SCFD1-208ENST00000553278 ARHGAP31Q2M1Z3 1444 aa2.44□□□□□ -2.02
SCFD1-208ENST00000553278 IGHV1-24A0A0C4DH33 117 aa2.44□□□□□ -2.02
SCFD1-208ENST00000553278 HCRTO43612 131 aa2.44□□□□□ -2.02
SCFD1-208ENST00000553278 YPEL1O60688 119 aa2.44□□□□□ -2.02
SCFD1-208ENST00000553278 EDF1O60869 148 aaKnown RBP2.44□□□□□ -2.02
SCFD1-208ENST00000553278 RBP4P02753 201 aa2.44□□□□□ -2.02
SCFD1-208ENST00000553278 DNAJB13P59910 316 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms