RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 RPL7P18124 248 aaKnown RBP4.34□□□□□ -1.71
LIMA1-215ENST00000552823 HINT1P49773 126 aaPredicted RBP4.34□□□□□ -1.71
LIMA1-215ENST00000552823 KIR3DS1Q14943 382 aa4.34□□□□□ -1.71
LIMA1-215ENST00000552823 PVRIGQ6DKI7 326 aa4.34□□□□□ -1.71
LIMA1-215ENST00000552823 RBPMS2Q6ZRY4 209 aaKnown RBP4.34□□□□□ -1.71
LIMA1-215ENST00000552823 FMC1Q96HJ9 113 aa4.34□□□□□ -1.71
LIMA1-215ENST00000552823 BEX4Q9NWD9 120 aaPredicted RBP4.34□□□□□ -1.71
LIMA1-215ENST00000552823 hDV102S1A0JD36 115 aa4.34□□□□□ -1.72
LIMA1-215ENST00000552823 A8MWP6 167 aa4.34□□□□□ -1.72
LIMA1-215ENST00000552823 NDUFA3O95167 84 aa4.34□□□□□ -1.72
LIMA1-215ENST00000552823 GAS8-AS1O95177 125 aa4.34□□□□□ -1.72
LIMA1-215ENST00000552823 ARL3P36405 182 aa4.34□□□□□ -1.72
LIMA1-215ENST00000552823 PSG3Q16557 428 aa4.34□□□□□ -1.72
LIMA1-215ENST00000552823 TM4SF20Q53R12 229 aa4.34□□□□□ -1.72
LIMA1-215ENST00000552823 Q6ZN92 141 aa4.34□□□□□ -1.72
LIMA1-215ENST00000552823 REC114Q7Z4M0 266 aa4.34□□□□□ -1.72
LIMA1-215ENST00000552823 ZNF738Q8NE65 137 aa4.34□□□□□ -1.72
LIMA1-215ENST00000552823 NPBQ8NG41 125 aa4.34□□□□□ -1.72
LIMA1-215ENST00000552823 KCNS1Q96KK3 526 aa4.34□□□□□ -1.72
LIMA1-215ENST00000552823 SMAD5-AS1Q9Y6J3 95 aa4.34□□□□□ -1.72
LIMA1-215ENST00000552823 IGHV1-69DA0A0B4J2H0 117 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 A0A1B0GUT8 65 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 IGLV2-11P01706 119 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 IGHV1-69P01742 117 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 IGHV4-59P01825 116 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 SFTPCP11686 197 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 MYCNOSP40205 109 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 LOXL1Q08397 574 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-215ENST00000552823 EBLN2Q6P2I7 272 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 ALKBH7Q9BT30 221 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-215ENST00000552823 LY96Q9Y6Y9 160 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 TRAV30A0A087WSZ9 112 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 D6R8Y8 96 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 INS-IGF2F8WCM5 200 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 OVOL3O00110 214 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 LTAP01374 205 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 MT-ND6P03923 174 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 IGLC2P0DOY2 106 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 PAFAH1B2P68402 229 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 HIST1H1AQ02539 215 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-215ENST00000552823 COA6Q5JTJ3 125 aaKnown RBP4.33□□□□□ -1.72
LIMA1-215ENST00000552823 MINOS1Q5TGZ0 78 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 FA2HQ7L5A8 372 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 TTC9CQ8N5M4 171 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 CCDC140Q96MF4 163 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 METTL26Q96S19 204 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 RNF5Q99942 180 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 MINOS1-NBL1R4GNA1 71 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 TRAV26-2A0A0B4J265 109 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 M0R381 172 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 LEPROTL1O95214 131 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 IFI27P40305 119 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-215ENST00000552823 FOXE3Q13461 319 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 EEF1AKMT3Q96AZ1 226 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 MLST8Q9BVC4 326 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 SNHG12Q9BXW3 62 aa4.33□□□□□ -1.72
LIMA1-215ENST00000552823 S100A4P26447 101 aaKnown RBP4.32□□□□□ -1.72
LIMA1-215ENST00000552823 CKS2P33552 79 aa4.32□□□□□ -1.72
LIMA1-215ENST00000552823 SPATA12Q7Z6I5 190 aa4.32□□□□□ -1.72
LIMA1-215ENST00000552823 SCGB2A1O75556 95 aa4.32□□□□□ -1.72
LIMA1-215ENST00000552823 PAX8Q06710 450 aa4.32□□□□□ -1.72
LIMA1-215ENST00000552823 RIGQ13278 110 aa4.32□□□□□ -1.72
LIMA1-215ENST00000552823 DEFB136Q30KP8 78 aa4.32□□□□□ -1.72
LIMA1-215ENST00000552823 DEFB112Q30KQ8 113 aa4.32□□□□□ -1.72
LIMA1-215ENST00000552823 LURAP1LQ8IV03 231 aa4.32□□□□□ -1.72
LIMA1-215ENST00000552823 OR4B1Q8NGF8 309 aa4.32□□□□□ -1.72
LIMA1-215ENST00000552823 OR4X2Q8NGF9 303 aa4.32□□□□□ -1.72
LIMA1-215ENST00000552823 ZNF502Q8TBZ5 544 aa4.32□□□□□ -1.72
LIMA1-215ENST00000552823 C10orf105Q8TEF2 133 aa4.32□□□□□ -1.72
LIMA1-215ENST00000552823 PRR25Q96S07 402 aa4.32□□□□□ -1.72
LIMA1-215ENST00000552823 NDFIP1Q9BT67 221 aa4.32□□□□□ -1.72
LIMA1-215ENST00000552823 AGPAT4-IT1Q9H0P7 198 aa4.32□□□□□ -1.72
LIMA1-215ENST00000552823 WI2-2373I1.2A0A1W2PRP0 233 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 MSMBP08118 114 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 COX6B1P14854 86 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 ZNF25P17030 456 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-215ENST00000552823 HNRNPA3P51991 378 aaKnown RBP4.31□□□□□ -1.72
LIMA1-215ENST00000552823 PAX2Q02962 417 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 C5orf56Q8N8D9 126 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 FAM110DQ8TAY7 271 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-215ENST00000552823 AJUBAQ96IF1 538 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 NDUFAF3Q9BU61 184 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 MOB4Q9Y3A3 225 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 A0A1W2PRX2 142 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 C19orf71A6NCJ1 209 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 FAM181BA6NEQ2 426 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 H3BVH4 76 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 OR5AL1P0C617 328 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 LINC00614P0C842 121 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 RNASE4P34096 147 aaKnown RBP4.31□□□□□ -1.72
LIMA1-215ENST00000552823 PLP1P60201 277 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 Q0VG73 95 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 TMEM78Q5T7P6 136 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 Q8N6K4 173 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 FER1L6-AS1Q8NA97 138 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 URB1-AS1Q96HZ7 61 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 KLF12Q9Y4X4 402 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 APCP25054 2843 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 NIPBLQ6KC79 2804 aaeCLIP4.31□□□□□ -1.72
LIMA1-215ENST00000552823 LOC102724200A0A096LPH7 203 aaPredicted RBP4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms