RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 Q1T7F1 81 aa2.59□□□□□ -1.99
LIMA1-210ENST00000552045 SCGB2B2Q4G0G5 96 aa2.59□□□□□ -1.99
LIMA1-210ENST00000552045 COA5Q86WW8 74 aa2.59□□□□□ -1.99
LIMA1-210ENST00000552045 TMEM70Q9BUB7 260 aa2.59□□□□□ -1.99
LIMA1-210ENST00000552045 PBOV1Q9GZY1 135 aa2.59□□□□□ -1.99
LIMA1-210ENST00000552045 CENPHQ9H3R5 247 aa2.59□□□□□ -1.99
LIMA1-210ENST00000552045 OTOGLQ3ZCN5 2332 aa2.59□□□□□ -2
LIMA1-210ENST00000552045 UBR2Q8IWV8 1755 aa2.59□□□□□ -2
LIMA1-210ENST00000552045 FN1P02751 2386 aaKnown RBP2.58□□□□□ -2
LIMA1-210ENST00000552045 RIIAD1A6NNX1 92 aa2.58□□□□□ -2
LIMA1-210ENST00000552045 OVOL1O14753 267 aa2.58□□□□□ -2
LIMA1-210ENST00000552045 GPX1P07203 203 aa2.58□□□□□ -2
LIMA1-210ENST00000552045 IDO1P14902 403 aa2.58□□□□□ -2
LIMA1-210ENST00000552045 KRTAP12-1P59990 96 aa2.58□□□□□ -2
LIMA1-210ENST00000552045 SNCBQ16143 134 aa2.58□□□□□ -2
LIMA1-210ENST00000552045 BCL2L15Q5TBC7 163 aa2.58□□□□□ -2
LIMA1-210ENST00000552045 GPER1Q99527 375 aa2.58□□□□□ -2
LIMA1-210ENST00000552045 LAMB1P07942 1786 aa2.58□□□□□ -2
LIMA1-210ENST00000552045 RELNP78509 3460 aa2.58□□□□□ -2
LIMA1-210ENST00000552045 LRRC37AA6NMS7 1700 aa2.57□□□□□ -2
LIMA1-210ENST00000552045 PCNX1Q96RV3 2341 aa2.57□□□□□ -2
LIMA1-210ENST00000552045 RGPD2P0DJD1 1756 aa2.57□□□□□ -2
LIMA1-210ENST00000552045 DUXBA0A1W2PPF3 345 aa2.57□□□□□ -2
LIMA1-210ENST00000552045 M0R378 163 aa2.57□□□□□ -2
LIMA1-210ENST00000552045 ZNF846Q147U1 533 aa2.57□□□□□ -2
LIMA1-210ENST00000552045 SPANXN5Q5MJ07 72 aa2.57□□□□□ -2
LIMA1-210ENST00000552045 LINC00471Q8N535 108 aa2.57□□□□□ -2
LIMA1-210ENST00000552045 MALSU1Q96EH3 234 aa2.57□□□□□ -2
LIMA1-210ENST00000552045 NHP2Q9NX24 153 aaKnown RBP2.57□□□□□ -2
LIMA1-210ENST00000552045 TAS2R4Q9NYW5 299 aa2.57□□□□□ -2
LIMA1-210ENST00000552045 SMPXQ9UHP9 88 aa2.57□□□□□ -2
LIMA1-210ENST00000552045 PCTPQ9UKL6 214 aa2.57□□□□□ -2
LIMA1-210ENST00000552045 FREM2Q5SZK8 3169 aa2.57□□□□□ -2
LIMA1-210ENST00000552045 BRWD1Q9NSI6 2320 aa2.56□□□□□ -2
LIMA1-210ENST00000552045 APOA2P02652 100 aa2.56□□□□□ -2
LIMA1-210ENST00000552045 CRPP02741 224 aa2.56□□□□□ -2
LIMA1-210ENST00000552045 KRTAP12-3P60328 96 aa2.56□□□□□ -2
LIMA1-210ENST00000552045 OR10J5Q8NHC4 309 aa2.56□□□□□ -2
LIMA1-210ENST00000552045 YPEL2Q96QA6 119 aa2.56□□□□□ -2
LIMA1-210ENST00000552045 SLC50A1Q9BRV3 221 aa2.56□□□□□ -2
LIMA1-210ENST00000552045 TMEM126AQ9H061 195 aa2.56□□□□□ -2
LIMA1-210ENST00000552045 SLC35A3Q9Y2D2 325 aa2.56□□□□□ -2
LIMA1-210ENST00000552045 CELSR3Q9NYQ7 3312 aa2.56□□□□□ -2
LIMA1-210ENST00000552045 DMXL2Q8TDJ6 3036 aa2.55□□□□□ -2
LIMA1-210ENST00000552045 A0A1B0GV72 72 aa2.55□□□□□ -2
LIMA1-210ENST00000552045 FUOMA2VDF0 154 aa2.55□□□□□ -2
LIMA1-210ENST00000552045 GGCTO75223 188 aaKnown RBP2.55□□□□□ -2
LIMA1-210ENST00000552045 GLRXP35754 106 aa2.55□□□□□ -2
LIMA1-210ENST00000552045 UBE2BP63146 152 aa2.55□□□□□ -2
LIMA1-210ENST00000552045 C22orf39Q6P5X5 142 aa2.55□□□□□ -2
LIMA1-210ENST00000552045 OR2T10Q8NGZ9 312 aa2.55□□□□□ -2
LIMA1-210ENST00000552045 CANT1Q8WVQ1 401 aa2.55□□□□□ -2
LIMA1-210ENST00000552045 ZNF625Q96I27 306 aaPredicted RBP2.55□□□□□ -2
LIMA1-210ENST00000552045 COL12A1Q99715 3063 aa2.55□□□□□ -2
LIMA1-210ENST00000552045 PRADC1Q9BSG0 188 aa2.55□□□□□ -2
LIMA1-210ENST00000552045 OR2J1Q9GZK6 312 aa2.55□□□□□ -2
LIMA1-210ENST00000552045 DOCK4Q8N1I0 1966 aa2.54□□□□□ -2
LIMA1-210ENST00000552045 DDX60Q8IY21 1712 aaKnown RBP2.54□□□□□ -2
LIMA1-210ENST00000552045 TRGV10A0A0A0MS01 117 aa2.54□□□□□ -2
LIMA1-210ENST00000552045 TRAV1-1A0A0B4J248 108 aa2.54□□□□□ -2
LIMA1-210ENST00000552045 F8W036 122 aa2.54□□□□□ -2
LIMA1-210ENST00000552045 TMEM256-PLSCR3K7ERE1 68 aa2.54□□□□□ -2
LIMA1-210ENST00000552045 GPR31O00270 319 aa2.54□□□□□ -2
LIMA1-210ENST00000552045 OR2T1O43869 369 aa2.54□□□□□ -2
LIMA1-210ENST00000552045 CSN2P05814 226 aa2.54□□□□□ -2
LIMA1-210ENST00000552045 NFYBP25208 207 aa2.54□□□□□ -2
LIMA1-210ENST00000552045 DYNLT1P63172 113 aa2.54□□□□□ -2
LIMA1-210ENST00000552045 DR1Q01658 176 aa2.54□□□□□ -2
LIMA1-210ENST00000552045 BRMS1LQ5PSV4 323 aa2.54□□□□□ -2
LIMA1-210ENST00000552045 FP248Q71RG6 208 aaPredicted RBP2.54□□□□□ -2
LIMA1-210ENST00000552045 Q96M85 177 aa2.54□□□□□ -2
LIMA1-210ENST00000552045 TLN1Q9Y490 2541 aaKnown RBP2.54□□□□□ -2
LIMA1-210ENST00000552045 PTPRQQ9UMZ3 2332 aa2.54□□□□□ -2
LIMA1-210ENST00000552045 ZFHX3Q15911 3703 aa2.54□□□□□ -2
LIMA1-210ENST00000552045 SETD2Q9BYW2 2564 aaPredicted RBP2.54□□□□□ -2
LIMA1-210ENST00000552045 MED23Q9ULK4 1368 aa2.53□□□□□ -2
LIMA1-210ENST00000552045 ZNF705BP0CI00 300 aaPredicted RBP2.53□□□□□ -2
LIMA1-210ENST00000552045 MIFP14174 115 aa2.53□□□□□ -2
LIMA1-210ENST00000552045 C3orf56Q8N813 242 aa2.53□□□□□ -2
LIMA1-210ENST00000552045 SREK1IP1Q8N9Q2 155 aaPredicted RBP2.53□□□□□ -2
LIMA1-210ENST00000552045 PLEKHB2Q96CS7 222 aa2.53□□□□□ -2
LIMA1-210ENST00000552045 MRPL32Q9BYC8 188 aaKnown RBP2.53□□□□□ -2
LIMA1-210ENST00000552045 LRRK2Q5S007 2527 aa2.52□□□□□ -2.01
LIMA1-210ENST00000552045 DOCK10Q96BY6 2186 aa2.52□□□□□ -2.01
LIMA1-210ENST00000552045 NDUFB3O43676 98 aa2.52□□□□□ -2.01
LIMA1-210ENST00000552045 BAALC-AS2P0C853 105 aa2.52□□□□□ -2.01
LIMA1-210ENST00000552045 MGST1P10620 155 aaKnown RBP2.52□□□□□ -2.01
LIMA1-210ENST00000552045 SOSTDC1Q6X4U4 206 aa2.52□□□□□ -2.01
LIMA1-210ENST00000552045 SMIM15Q7Z3B0 74 aa2.52□□□□□ -2.01
LIMA1-210ENST00000552045 PHF13Q86YI8 300 aaPredicted RBP2.52□□□□□ -2.01
LIMA1-210ENST00000552045 PDZD9Q8IXQ8 264 aa2.52□□□□□ -2.01
LIMA1-210ENST00000552045 FAM24BQ8N5W8 94 aa2.52□□□□□ -2.01
LIMA1-210ENST00000552045 SLC30A7Q8NEW0 376 aa2.52□□□□□ -2.01
LIMA1-210ENST00000552045 NUP35Q8NFH5 326 aa2.52□□□□□ -2.01
LIMA1-210ENST00000552045 BCL2L10Q9HD36 194 aa2.52□□□□□ -2.01
LIMA1-210ENST00000552045 SPG11Q96JI7 2443 aa2.52□□□□□ -2.01
LIMA1-210ENST00000552045 MGAMO43451 1857 aa2.52□□□□□ -2.01
LIMA1-210ENST00000552045 NUP210LQ5VU65 1888 aa2.52□□□□□ -2.01
LIMA1-210ENST00000552045 RTTNQ86VV8 2226 aa2.52□□□□□ -2.01
LIMA1-210ENST00000552045 ASXL3Q9C0F0 2248 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms