RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 KLLNB2CW77 178 aa11.42□□□□□ -0.58
VPS29-204ENST00000548259 E5RGE8 158 aa11.42□□□□□ -0.58
VPS29-204ENST00000548259 H3BQ15 152 aa11.42□□□□□ -0.58
VPS29-204ENST00000548259 UBE2MP61081 183 aaKnown RBP11.42□□□□□ -0.58
VPS29-204ENST00000548259 TMEM14EPQ6UXP3 125 aa11.42□□□□□ -0.58
VPS29-204ENST00000548259 WFDC10BQ8IUB3 73 aa11.42□□□□□ -0.58
VPS29-204ENST00000548259 C12orf45Q8N5I9 185 aaPredicted RBP11.42□□□□□ -0.58
VPS29-204ENST00000548259 OR1L4Q8NGR5 311 aa11.42□□□□□ -0.58
VPS29-204ENST00000548259 DEDD2Q8WXF8 326 aa11.42□□□□□ -0.58
VPS29-204ENST00000548259 MRPL16Q9NX20 251 aaKnown RBP11.42□□□□□ -0.58
VPS29-204ENST00000548259 PRELID1Q9Y255 219 aa11.42□□□□□ -0.58
VPS29-204ENST00000548259 BOLA1Q9Y3E2 137 aa11.42□□□□□ -0.58
VPS29-204ENST00000548259 C1QBP02746 253 aa11.41□□□□□ -0.58
VPS29-204ENST00000548259 NMBP08949 121 aa11.41□□□□□ -0.58
VPS29-204ENST00000548259 TAS2R30P59541 319 aa11.41□□□□□ -0.58
VPS29-204ENST00000548259 ZNF415Q09FC8 603 aa11.41□□□□□ -0.58
VPS29-204ENST00000548259 BTN1A1Q13410 526 aa11.41□□□□□ -0.58
VPS29-204ENST00000548259 FHL2Q14192 279 aa11.41□□□□□ -0.58
VPS29-204ENST00000548259 SPCS2Q15005 226 aa11.41□□□□□ -0.58
VPS29-204ENST00000548259 TMEM37Q8WXS4 190 aa11.41□□□□□ -0.58
VPS29-204ENST00000548259 PFDN5Q99471 154 aa11.41□□□□□ -0.58
VPS29-204ENST00000548259 K7EQD1 137 aa11.4□□□□□ -0.58
VPS29-204ENST00000548259 TSC22D2O75157 780 aa11.4□□□□□ -0.58
VPS29-204ENST00000548259 CD300CQ08708 224 aa11.4□□□□□ -0.58
VPS29-204ENST00000548259 SH2D6Q7Z4S9 175 aa11.4□□□□□ -0.58
VPS29-204ENST00000548259 IGHV1OR15-1A0A075B7D0 117 aa11.39□□□□□ -0.59
VPS29-204ENST00000548259 C9JCJ5 164 aa11.39□□□□□ -0.59
VPS29-204ENST00000548259 CCNKO75909 580 aa11.39□□□□□ -0.59
VPS29-204ENST00000548259 SCGB1D2O95969 90 aa11.39□□□□□ -0.59
VPS29-204ENST00000548259 HIST1H1EP10412 219 aaKnown RBP11.39□□□□□ -0.59
VPS29-204ENST00000548259 GYPEP15421 78 aa11.39□□□□□ -0.59
VPS29-204ENST00000548259 CAMLGP49069 296 aa11.39□□□□□ -0.59
VPS29-204ENST00000548259 ERCC8Q13216 396 aa11.39□□□□□ -0.59
VPS29-204ENST00000548259 TMEM78Q5T7P6 136 aa11.39□□□□□ -0.59
VPS29-204ENST00000548259 IQCF2Q8IXL9 164 aa11.39□□□□□ -0.59
VPS29-204ENST00000548259 SRRQ9GZT4 340 aa11.39□□□□□ -0.59
VPS29-204ENST00000548259 AAMDCQ9H7C9 122 aa11.39□□□□□ -0.59
VPS29-204ENST00000548259 TIMM9Q9Y5J7 89 aa11.39□□□□□ -0.59
VPS29-204ENST00000548259 CRISP2P16562 243 aa11.38□□□□□ -0.59
VPS29-204ENST00000548259 TNFSF8P32971 234 aa11.38□□□□□ -0.59
VPS29-204ENST00000548259 PYDC2Q56P42 97 aa11.38□□□□□ -0.59
VPS29-204ENST00000548259 MORN5Q5VZ52 161 aa11.38□□□□□ -0.59
VPS29-204ENST00000548259 Q8N814 137 aa11.38□□□□□ -0.59
VPS29-204ENST00000548259 RCL1Q9Y2P8 373 aaKnown RBP11.38□□□□□ -0.59
VPS29-204ENST00000548259 TRBV19A0A075B6N1 114 aa11.37□□□□□ -0.59
VPS29-204ENST00000548259 IGHV3-38A0A0C4DH36 116 aa11.37□□□□□ -0.59
VPS29-204ENST00000548259 C9orf170A2RU37 121 aa11.37□□□□□ -0.59
VPS29-204ENST00000548259 M0R3E3 92 aa11.37□□□□□ -0.59
VPS29-204ENST00000548259 PDE6HQ13956 83 aa11.37□□□□□ -0.59
VPS29-204ENST00000548259 DYNC2LI1Q8TCX1 351 aa11.37□□□□□ -0.59
VPS29-204ENST00000548259 RAB2BQ8WUD1 216 aa11.37□□□□□ -0.59
VPS29-204ENST00000548259 FAM19A4Q96LR4 140 aa11.37□□□□□ -0.59
VPS29-204ENST00000548259 MGST2Q99735 147 aa11.37□□□□□ -0.59
VPS29-204ENST00000548259 SOSTQ9BQB4 213 aa11.37□□□□□ -0.59
VPS29-204ENST00000548259 AGPAT4-IT1Q9H0P7 198 aa11.37□□□□□ -0.59
VPS29-204ENST00000548259 LRCOL1A6NCL2 159 aa11.36□□□□□ -0.59
VPS29-204ENST00000548259 IAH1Q2TAA2 248 aaPredicted RBP11.36□□□□□ -0.59
VPS29-204ENST00000548259 TP53TG3Q9ULZ0 132 aa11.36□□□□□ -0.59
VPS29-204ENST00000548259 L7N2F9 121 aa11.35□□□□□ -0.59
VPS29-204ENST00000548259 NOL3O60936 208 aaKnown RBP11.35□□□□□ -0.59
VPS29-204ENST00000548259 PPT1P50897 306 aa11.35□□□□□ -0.59
VPS29-204ENST00000548259 VAMP2P63027 116 aa11.35□□□□□ -0.59
VPS29-204ENST00000548259 C9orf47Q6ZRZ4 202 aa11.35□□□□□ -0.59
VPS29-204ENST00000548259 NRARPQ7Z6K4 114 aa11.35□□□□□ -0.59
VPS29-204ENST00000548259 LINC00528Q8N1L1 170 aa11.35□□□□□ -0.59
VPS29-204ENST00000548259 OR10G4Q8NGN3 311 aa11.35□□□□□ -0.59
VPS29-204ENST00000548259 TRIM63Q969Q1 353 aa11.35□□□□□ -0.59
VPS29-204ENST00000548259 BCL7BQ9BQE9 202 aa11.35□□□□□ -0.59
VPS29-204ENST00000548259 SLC25A31Q9H0C2 315 aa11.35□□□□□ -0.59
VPS29-204ENST00000548259 GSKIPQ9P0R6 139 aa11.35□□□□□ -0.59
VPS29-204ENST00000548259 TRAV8-6A0A0B4J262 113 aa11.34□□□□□ -0.59
VPS29-204ENST00000548259 SMIM18P0DKX4 95 aa11.34□□□□□ -0.59
VPS29-204ENST00000548259 SPXQ9BT56 116 aa11.34□□□□□ -0.59
VPS29-204ENST00000548259 MRPS26Q9BYN8 205 aaKnown RBP11.34□□□□□ -0.59
VPS29-204ENST00000548259 C20orf85Q9H1P6 137 aa11.34□□□□□ -0.59
VPS29-204ENST00000548259 TMEM14CQ9P0S9 112 aa11.34□□□□□ -0.59
VPS29-204ENST00000548259 IBA57-AS1B1ANH7 110 aa11.33□□□□□ -0.6
VPS29-204ENST00000548259 SFTA3P0C7M3 94 aa11.33□□□□□ -0.6
VPS29-204ENST00000548259 TIRAPP58753 221 aa11.33□□□□□ -0.6
VPS29-204ENST00000548259 ARL16Q0P5N6 197 aa11.33□□□□□ -0.6
VPS29-204ENST00000548259 LINC01556Q5JQF7 62 aa11.33□□□□□ -0.6
VPS29-204ENST00000548259 MIC13Q5XKP0 118 aa11.33□□□□□ -0.6
VPS29-204ENST00000548259 ZFAND2AQ8N6M9 145 aa11.33□□□□□ -0.6
VPS29-204ENST00000548259 NHLRC2Q8NBF2 726 aa11.33□□□□□ -0.6
VPS29-204ENST00000548259 ZNF479Q96JC4 524 aa11.33□□□□□ -0.6
VPS29-204ENST00000548259 TM2D2Q9BX73 214 aa11.33□□□□□ -0.6
VPS29-204ENST00000548259 Q9HAA7 133 aa11.33□□□□□ -0.6
VPS29-204ENST00000548259 FAM30AQ9NZY2 134 aa11.33□□□□□ -0.6
VPS29-204ENST00000548259 TRBV7-9A0A0J9YWB2 115 aa11.32□□□□□ -0.6
VPS29-204ENST00000548259 BCAP31P51572 246 aa11.32□□□□□ -0.6
VPS29-204ENST00000548259 TMBIM6P55061 237 aa11.32□□□□□ -0.6
VPS29-204ENST00000548259 TDRG1Q3Y452 100 aa11.32□□□□□ -0.6
VPS29-204ENST00000548259 RASL10AQ92737 203 aa11.32□□□□□ -0.6
VPS29-204ENST00000548259 GPN1Q9HCN4 374 aaPredicted RBP11.32□□□□□ -0.6
VPS29-204ENST00000548259 UQCC1Q9NVA1 299 aa11.32□□□□□ -0.6
VPS29-204ENST00000548259 TRGV11A0A075B6L2 103 aa11.31□□□□□ -0.6
VPS29-204ENST00000548259 C7orf66A4D0T2 115 aa11.31□□□□□ -0.6
VPS29-204ENST00000548259 RPL29P47914 159 aaKnown RBP11.31□□□□□ -0.6
VPS29-204ENST00000548259 INPP1P49441 399 aa11.31□□□□□ -0.6
VPS29-204ENST00000548259 ZNF138P52744 262 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms