RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 OR4F17Q8NGA8 305 aa11.02□□□□□ -0.64
VPS33A-209ENST00000544349 RNF24Q9Y225 148 aa11.02□□□□□ -0.64
VPS33A-209ENST00000544349 TEX15Q9BXT5 2789 aa11.02□□□□□ -0.65
VPS33A-209ENST00000544349 RAB9AP51151 201 aa11.02□□□□□ -0.65
VPS33A-209ENST00000544349 FOXA3P55318 350 aaPredicted RBP11.02□□□□□ -0.65
VPS33A-209ENST00000544349 RELQ04864 619 aaPredicted RBP11.02□□□□□ -0.65
VPS33A-209ENST00000544349 RNASEKQ6P5S7 137 aaKnown RBP11.02□□□□□ -0.65
VPS33A-209ENST00000544349 NPFFR1Q9GZQ6 430 aa11.02□□□□□ -0.65
VPS33A-209ENST00000544349 IGHV3OR16-8A0A075B7F1 116 aa11.01□□□□□ -0.65
VPS33A-209ENST00000544349 ZNF705AQ6ZN79 300 aaPredicted RBP11.01□□□□□ -0.65
VPS33A-209ENST00000544349 RBPMS2Q6ZRY4 209 aaKnown RBP11.01□□□□□ -0.65
VPS33A-209ENST00000544349 TMEM75Q8N9X5 138 aa11.01□□□□□ -0.65
VPS33A-209ENST00000544349 DAZAP1Q96EP5 407 aaKnown RBP11.01□□□□□ -0.65
VPS33A-209ENST00000544349 ZNF702PQ9H963 129 aa11.01□□□□□ -0.65
VPS33A-209ENST00000544349 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11□□□□□ -0.65
VPS33A-209ENST00000544349 A0A0G2JLM5 398 aa11□□□□□ -0.65
VPS33A-209ENST00000544349 IGHG4P01861 327 aa11□□□□□ -0.65
VPS33A-209ENST00000544349 APOHP02749 345 aaPredicted RBP11□□□□□ -0.65
VPS33A-209ENST00000544349 RAB4AP20338 218 aa11□□□□□ -0.65
VPS33A-209ENST00000544349 S100A7P31151 101 aa11□□□□□ -0.65
VPS33A-209ENST00000544349 ARL3P36405 182 aa11□□□□□ -0.65
VPS33A-209ENST00000544349 LCN12Q6JVE5 192 aa11□□□□□ -0.65
VPS33A-209ENST00000544349 LCNL1Q6ZST4 164 aa11□□□□□ -0.65
VPS33A-209ENST00000544349 YAE1D1Q9NRH1 226 aa11□□□□□ -0.65
VPS33A-209ENST00000544349 CCDC168Q8NDH2 2452 aa11□□□□□ -0.65
VPS33A-209ENST00000544349 CLPSL1A2RUU4 121 aa11□□□□□ -0.65
VPS33A-209ENST00000544349 IGHV3-11P01762 117 aa11□□□□□ -0.65
VPS33A-209ENST00000544349 PSMB8P28062 276 aa11□□□□□ -0.65
VPS33A-209ENST00000544349 CTRLP40313 264 aa11□□□□□ -0.65
VPS33A-209ENST00000544349 LBHQ53QV2 105 aaPredicted RBP11□□□□□ -0.65
VPS33A-209ENST00000544349 GFRA4Q9GZZ7 299 aa11□□□□□ -0.65
VPS33A-209ENST00000544349 TRBV6-1A0A0K0K1D8 114 aa10.99□□□□□ -0.65
VPS33A-209ENST00000544349 FAM181BA6NEQ2 426 aa10.99□□□□□ -0.65
VPS33A-209ENST00000544349 TRBV12-3P01733 135 aa10.99□□□□□ -0.65
VPS33A-209ENST00000544349 CRIP1P50238 77 aa10.99□□□□□ -0.65
VPS33A-209ENST00000544349 PMCHL1Q16048 86 aa10.99□□□□□ -0.65
VPS33A-209ENST00000544349 EBLN2Q6P2I7 272 aa10.99□□□□□ -0.65
VPS33A-209ENST00000544349 C8orf49Q96NF6 230 aa10.99□□□□□ -0.65
VPS33A-209ENST00000544349 DUX5Q96PT3 197 aa10.99□□□□□ -0.65
VPS33A-209ENST00000544349 MIEN1Q9BRT3 115 aa10.99□□□□□ -0.65
VPS33A-209ENST00000544349 PSG8Q9UQ74 426 aa10.99□□□□□ -0.65
VPS33A-209ENST00000544349 UNC79Q9P2D8 2635 aa10.99□□□□□ -0.65
VPS33A-209ENST00000544349 TMEM89A2RUT3 159 aa10.99□□□□□ -0.65
VPS33A-209ENST00000544349 HSBP1O75506 76 aa10.99□□□□□ -0.65
VPS33A-209ENST00000544349 RPL7P18124 248 aaKnown RBP10.99□□□□□ -0.65
VPS33A-209ENST00000544349 PSG3Q16557 428 aa10.99□□□□□ -0.65
VPS33A-209ENST00000544349 SPATA12Q7Z6I5 190 aa10.99□□□□□ -0.65
VPS33A-209ENST00000544349 ATOH7Q8N100 152 aa10.99□□□□□ -0.65
VPS33A-209ENST00000544349 TMEM86BQ8N661 226 aa10.99□□□□□ -0.65
VPS33A-209ENST00000544349 OR4B1Q8NGF8 309 aa10.99□□□□□ -0.65
VPS33A-209ENST00000544349 OR4X2Q8NGF9 303 aa10.99□□□□□ -0.65
VPS33A-209ENST00000544349 M0R2Z0 102 aa10.98□□□□□ -0.65
VPS33A-209ENST00000544349 BUB3O43684 328 aa10.98□□□□□ -0.65
VPS33A-209ENST00000544349 MAJINQ3KP22 176 aa10.98□□□□□ -0.65
VPS33A-209ENST00000544349 C10orf99Q6UWK7 81 aa10.98□□□□□ -0.65
VPS33A-209ENST00000544349 LYPD1Q8N2G4 141 aa10.98□□□□□ -0.65
VPS33A-209ENST00000544349 M0R143 59 aa10.97□□□□□ -0.65
VPS33A-209ENST00000544349 NUTF2P61970 127 aaKnown RBP10.97□□□□□ -0.65
VPS33A-209ENST00000544349 PDE6HQ13956 83 aa10.97□□□□□ -0.65
VPS33A-209ENST00000544349 SPATA45Q537H7 98 aa10.97□□□□□ -0.65
VPS33A-209ENST00000544349 CLEC5AQ9NY25 188 aa10.97□□□□□ -0.65
VPS33A-209ENST00000544349 ITPR2Q14571 2701 aa10.97□□□□□ -0.65
VPS33A-209ENST00000544349 ARMS2P0C7Q2 107 aa10.97□□□□□ -0.65
VPS33A-209ENST00000544349 Q8N2B8 174 aa10.97□□□□□ -0.65
VPS33A-209ENST00000544349 METTL26Q96S19 204 aa10.97□□□□□ -0.65
VPS33A-209ENST00000544349 SMAD5-AS1Q9Y6J3 95 aa10.97□□□□□ -0.65
VPS33A-209ENST00000544349 LOC102724200A0A096LPH7 203 aaPredicted RBP10.96□□□□□ -0.65
VPS33A-209ENST00000544349 NDUFA4O00483 81 aa10.96□□□□□ -0.65
VPS33A-209ENST00000544349 TMEM190Q8WZ59 177 aa10.96□□□□□ -0.65
VPS33A-209ENST00000544349 BORCS7Q96B45 105 aa10.96□□□□□ -0.65
VPS33A-209ENST00000544349 U3KQE9 123 aa10.96□□□□□ -0.65
VPS33A-209ENST00000544349 IGKV2-40A0A087WW87 121 aaPredicted RBP10.96□□□□□ -0.66
VPS33A-209ENST00000544349 FAM231BA6NCW3 169 aa10.96□□□□□ -0.66
VPS33A-209ENST00000544349 C2orf70A6NJV1 201 aa10.96□□□□□ -0.66
VPS33A-209ENST00000544349 IGKV2D-40P01614 121 aaPredicted RBP10.96□□□□□ -0.66
VPS33A-209ENST00000544349 IGFL4Q6B9Z1 124 aa10.96□□□□□ -0.66
VPS33A-209ENST00000544349 FLNAP21333 2647 aaKnown RBP10.95□□□□□ -0.66
VPS33A-209ENST00000544349 HAX1O00165 279 aa10.95□□□□□ -0.66
VPS33A-209ENST00000544349 CHEK1O14757 476 aa10.95□□□□□ -0.66
VPS33A-209ENST00000544349 ZNF207O43670 478 aaKnown RBP10.95□□□□□ -0.66
VPS33A-209ENST00000544349 HLA-DMBP28068 263 aa10.95□□□□□ -0.66
VPS33A-209ENST00000544349 LINC00173Q6ZV60 143 aa10.95□□□□□ -0.66
VPS33A-209ENST00000544349 ZFP30Q9Y2G7 519 aa10.95□□□□□ -0.66
VPS33A-209ENST00000544349 IGHV1-24A0A0C4DH33 117 aa10.94□□□□□ -0.66
VPS33A-209ENST00000544349 ELANEP08246 267 aa10.94□□□□□ -0.66
VPS33A-209ENST00000544349 UNQ9165/PRO28630Q6UXU0 137 aa10.94□□□□□ -0.66
VPS33A-209ENST00000544349 PEF1Q9UBV8 284 aaKnown RBP10.94□□□□□ -0.66
VPS33A-209ENST00000544349 IGHV3OR16-13A0A075B7E8 117 aa10.94□□□□□ -0.66
VPS33A-209ENST00000544349 IGHV3-74A0A0B4J1X5 117 aa10.94□□□□□ -0.66
VPS33A-209ENST00000544349 IGHV3-66A0A0C4DH42 116 aa10.94□□□□□ -0.66
VPS33A-209ENST00000544349 DNAJC9-AS1A6NH13 148 aa10.94□□□□□ -0.66
VPS33A-209ENST00000544349 K7EQM0 130 aa10.94□□□□□ -0.66
VPS33A-209ENST00000544349 RPLP1P05386 114 aaKnown RBP10.94□□□□□ -0.66
VPS33A-209ENST00000544349 ZNF138P52744 262 aa10.94□□□□□ -0.66
VPS33A-209ENST00000544349 PSG9Q00887 426 aa10.94□□□□□ -0.66
VPS33A-209ENST00000544349 FOXE3Q13461 319 aa10.94□□□□□ -0.66
VPS33A-209ENST00000544349 Q8TAT8 98 aa10.93□□□□□ -0.66
VPS33A-209ENST00000544349 AAMDCQ9H7C9 122 aa10.93□□□□□ -0.66
VPS33A-209ENST00000544349 MXRA5Q9NR99 2828 aa10.93□□□□□ -0.66
VPS33A-209ENST00000544349 A0A087X0K7 114 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms