RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 VGLL1Q99990 258 aa10.59□□□□□ -0.71
TNFRSF1A-216ENST00000543995 AGPAT4-IT1Q9H0P7 198 aa10.59□□□□□ -0.71
TNFRSF1A-216ENST00000543995 RETNQ9HD89 108 aa10.59□□□□□ -0.71
TNFRSF1A-216ENST00000543995 MANBALQ9NQG1 85 aa10.59□□□□□ -0.71
TNFRSF1A-216ENST00000543995 EPDR1Q9UM22 224 aa10.59□□□□□ -0.71
TNFRSF1A-216ENST00000543995 ARL2-SNX15V9GYD0 113 aa10.59□□□□□ -0.71
TNFRSF1A-216ENST00000543995 PRKDCP78527 4128 aaKnown RBP10.59□□□□□ -0.71
TNFRSF1A-216ENST00000543995 TCRAP04437 139 aa10.58□□□□□ -0.72
TNFRSF1A-216ENST00000543995 GIG44P09565 113 aaPredicted RBP10.58□□□□□ -0.72
TNFRSF1A-216ENST00000543995 SERTM2A0A1B0GWG4 89 aa10.58□□□□□ -0.72
TNFRSF1A-216ENST00000543995 SPRY2O43597 315 aa10.58□□□□□ -0.72
TNFRSF1A-216ENST00000543995 IFNA1P01562 189 aa10.58□□□□□ -0.72
TNFRSF1A-216ENST00000543995 AMBPP02760 352 aa10.58□□□□□ -0.72
TNFRSF1A-216ENST00000543995 TSPOP30536 169 aa10.58□□□□□ -0.72
TNFRSF1A-216ENST00000543995 CDKN1BP46527 198 aa10.58□□□□□ -0.72
TNFRSF1A-216ENST00000543995 ATP5G3P48201 142 aa10.58□□□□□ -0.72
TNFRSF1A-216ENST00000543995 ZNF138P52744 262 aa10.58□□□□□ -0.72
TNFRSF1A-216ENST00000543995 ATG101Q9BSB4 218 aa10.58□□□□□ -0.72
TNFRSF1A-216ENST00000543995 TRAV12-2A0A075B6T6 113 aa10.57□□□□□ -0.72
TNFRSF1A-216ENST00000543995 F6UZH7 168 aa10.57□□□□□ -0.72
TNFRSF1A-216ENST00000543995 J3KRW8 73 aa10.57□□□□□ -0.72
TNFRSF1A-216ENST00000543995 LEPP41159 167 aa10.57□□□□□ -0.72
TNFRSF1A-216ENST00000543995 CYB561D1Q8N8Q1 229 aa10.57□□□□□ -0.72
TNFRSF1A-216ENST00000543995 Q8TAT8 98 aa10.57□□□□□ -0.72
TNFRSF1A-216ENST00000543995 RNF183Q96D59 192 aa10.57□□□□□ -0.72
TNFRSF1A-216ENST00000543995 SGK494Q96LW2 274 aa10.57□□□□□ -0.72
TNFRSF1A-216ENST00000543995 ODF3Q96PU9 254 aa10.57□□□□□ -0.72
TNFRSF1A-216ENST00000543995 TRAV8-1A0A0A6YYK1 113 aa10.56□□□□□ -0.72
TNFRSF1A-216ENST00000543995 C11orf94C9JXX5 98 aa10.56□□□□□ -0.72
TNFRSF1A-216ENST00000543995 PEX7O00628 323 aa10.56□□□□□ -0.72
TNFRSF1A-216ENST00000543995 INSP01308 110 aa10.56□□□□□ -0.72
TNFRSF1A-216ENST00000543995 HIST1H2BAQ96A08 127 aa10.56□□□□□ -0.72
TNFRSF1A-216ENST00000543995 OVOL2Q9BRP0 275 aa10.56□□□□□ -0.72
TNFRSF1A-216ENST00000543995 ZNF492Q9P255 531 aa10.56□□□□□ -0.72
TNFRSF1A-216ENST00000543995 TP53TG1Q9Y2A0 90 aa10.56□□□□□ -0.72
TNFRSF1A-216ENST00000543995 IGHV3OR16-12A0A075B7B8 117 aa10.55□□□□□ -0.72
TNFRSF1A-216ENST00000543995 CCDC28AQ8IWP9 274 aa10.55□□□□□ -0.72
TNFRSF1A-216ENST00000543995 CSNK1G2-AS1Q8NCQ2 148 aa10.55□□□□□ -0.72
TNFRSF1A-216ENST00000543995 PCNPQ8WW12 178 aaKnown RBP10.55□□□□□ -0.72
TNFRSF1A-216ENST00000543995 IGF2BP2-AS1Q96M15 143 aa10.55□□□□□ -0.72
TNFRSF1A-216ENST00000543995 TCEAL7Q9BRU2 100 aa10.55□□□□□ -0.72
TNFRSF1A-216ENST00000543995 TMEM208Q9BTX3 173 aa10.55□□□□□ -0.72
TNFRSF1A-216ENST00000543995 GOLT1BQ9Y3E0 138 aa10.55□□□□□ -0.72
TNFRSF1A-216ENST00000543995 CRXO43186 299 aaPredicted RBP10.54□□□□□ -0.72
TNFRSF1A-216ENST00000543995 TMEM75Q8N9X5 138 aa10.54□□□□□ -0.72
TNFRSF1A-216ENST00000543995 OR11H2Q8NH07 326 aa10.54□□□□□ -0.72
TNFRSF1A-216ENST00000543995 RARRES2Q99969 163 aa10.54□□□□□ -0.72
TNFRSF1A-216ENST00000543995 GPX1P07203 203 aa10.53□□□□□ -0.72
TNFRSF1A-216ENST00000543995 BCL2P10415 239 aa10.53□□□□□ -0.72
TNFRSF1A-216ENST00000543995 FLI1Q01543 452 aaPredicted RBP10.53□□□□□ -0.72
TNFRSF1A-216ENST00000543995 KIR3DS1Q14943 382 aa10.53□□□□□ -0.72
TNFRSF1A-216ENST00000543995 PRNTQ86SH4 94 aa10.53□□□□□ -0.72
TNFRSF1A-216ENST00000543995 LYPD6BQ8NI32 183 aa10.53□□□□□ -0.72
TNFRSF1A-216ENST00000543995 FAM19A4Q96LR4 140 aa10.53□□□□□ -0.72
TNFRSF1A-216ENST00000543995 NDFIP1Q9BT67 221 aa10.53□□□□□ -0.72
TNFRSF1A-216ENST00000543995 U3KQK5 164 aa10.53□□□□□ -0.72
TNFRSF1A-216ENST00000543995 TRAV34A0A0B4J273 112 aa10.53□□□□□ -0.72
TNFRSF1A-216ENST00000543995 FBLL1A6NHQ2 334 aaKnown RBP10.53□□□□□ -0.72
TNFRSF1A-216ENST00000543995 RNASE4P34096 147 aaKnown RBP10.53□□□□□ -0.72
TNFRSF1A-216ENST00000543995 TAGLN2P37802 199 aaKnown RBP10.53□□□□□ -0.72
TNFRSF1A-216ENST00000543995 AKR1C3P42330 323 aa10.53□□□□□ -0.72
TNFRSF1A-216ENST00000543995 UBE2G1P62253 170 aa10.53□□□□□ -0.72
TNFRSF1A-216ENST00000543995 MEF2BQ02080 365 aaPredicted RBP10.53□□□□□ -0.72
TNFRSF1A-216ENST00000543995 PMS2P11Q13670 270 aa10.53□□□□□ -0.72
TNFRSF1A-216ENST00000543995 GFI1BQ5VTD9 330 aa10.53□□□□□ -0.72
TNFRSF1A-216ENST00000543995 LINC00479Q96M42 142 aa10.53□□□□□ -0.72
TNFRSF1A-216ENST00000543995 TXNDC17Q9BRA2 123 aa10.53□□□□□ -0.72
TNFRSF1A-216ENST00000543995 TREM1Q9NP99 234 aa10.53□□□□□ -0.72
TNFRSF1A-216ENST00000543995 VAX2Q9UIW0 290 aa10.53□□□□□ -0.72
TNFRSF1A-216ENST00000543995 PSG8Q9UQ74 426 aa10.53□□□□□ -0.72
TNFRSF1A-216ENST00000543995 LENEPQ9Y5L5 61 aa10.53□□□□□ -0.72
TNFRSF1A-216ENST00000543995 DNAH9Q9NYC9 4486 aa10.52□□□□□ -0.73
TNFRSF1A-216ENST00000543995 TRAV12-3A0A0B4J271 114 aa10.52□□□□□ -0.73
TNFRSF1A-216ENST00000543995 TRBV7-9A0A0J9YWB2 115 aa10.52□□□□□ -0.73
TNFRSF1A-216ENST00000543995 SCO2A0A1W2PP80 73 aa10.52□□□□□ -0.73
TNFRSF1A-216ENST00000543995 NMBP08949 121 aa10.52□□□□□ -0.73
TNFRSF1A-216ENST00000543995 CRISP2P16562 243 aa10.52□□□□□ -0.73
TNFRSF1A-216ENST00000543995 ZNF767PQ75MW2 155 aa10.52□□□□□ -0.73
TNFRSF1A-216ENST00000543995 FMC1Q96HJ9 113 aa10.52□□□□□ -0.73
TNFRSF1A-216ENST00000543995 LOC102723971A0A1B0GUV8 181 aa10.51□□□□□ -0.73
TNFRSF1A-216ENST00000543995 C7orf71A4D174 169 aa10.51□□□□□ -0.73
TNFRSF1A-216ENST00000543995 KLLNB2CW77 178 aa10.51□□□□□ -0.73
TNFRSF1A-216ENST00000543995 IGLV2-11P01706 119 aa10.51□□□□□ -0.73
TNFRSF1A-216ENST00000543995 RAB14P61106 215 aa10.51□□□□□ -0.73
TNFRSF1A-216ENST00000543995 BTN1A1Q13410 526 aa10.51□□□□□ -0.73
TNFRSF1A-216ENST00000543995 ZNF705AQ6ZN79 300 aaPredicted RBP10.51□□□□□ -0.73
TNFRSF1A-216ENST00000543995 C1orf158Q8N1D5 194 aa10.51□□□□□ -0.73
TNFRSF1A-216ENST00000543995 ZFAND2AQ8N6M9 145 aa10.51□□□□□ -0.73
TNFRSF1A-216ENST00000543995 LINC01587Q99440 93 aa10.51□□□□□ -0.73
TNFRSF1A-216ENST00000543995 NIPSNAP3BQ9BS92 247 aa10.51□□□□□ -0.73
TNFRSF1A-216ENST00000543995 RBFOX3A6NFN3 312 aa10.5□□□□□ -0.73
TNFRSF1A-216ENST00000543995 RGS13O14921 159 aa10.5□□□□□ -0.73
TNFRSF1A-216ENST00000543995 PDE6DO43924 150 aa10.5□□□□□ -0.73
TNFRSF1A-216ENST00000543995 RBMY1A1P0DJD3 496 aaKnown RBP10.5□□□□□ -0.73
TNFRSF1A-216ENST00000543995 RBMY1CP0DJD4 496 aa10.5□□□□□ -0.73
TNFRSF1A-216ENST00000543995 RBMY1FQ15415 496 aaKnown RBP10.5□□□□□ -0.73
TNFRSF1A-216ENST00000543995 TMEM256Q8N2U0 113 aa10.5□□□□□ -0.73
TNFRSF1A-216ENST00000543995 C20orf144Q9BQM9 153 aa10.5□□□□□ -0.73
TNFRSF1A-216ENST00000543995 EIF5A2Q9GZV4 153 aaKnown RBP10.5□□□□□ -0.73
TNFRSF1A-216ENST00000543995 HTN1P15515 57 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms