RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 RPEQ96AT9 228 aa11.28□□□□□ -0.6
SFSWAP-210ENST00000541286 ONECUT1Q9UBC0 465 aa11.28□□□□□ -0.6
SFSWAP-210ENST00000541286 IGHV3OR16-8A0A075B7F1 116 aa11.28□□□□□ -0.6
SFSWAP-210ENST00000541286 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.28□□□□□ -0.6
SFSWAP-210ENST00000541286 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.28□□□□□ -0.6
SFSWAP-210ENST00000541286 ATP5IP56385 69 aaPredicted RBP11.28□□□□□ -0.6
SFSWAP-210ENST00000541286 HES1Q14469 280 aa11.28□□□□□ -0.6
SFSWAP-210ENST00000541286 C17orf77Q96MU5 243 aa11.28□□□□□ -0.6
SFSWAP-210ENST00000541286 A8MWL6 223 aa11.28□□□□□ -0.6
SFSWAP-210ENST00000541286 TNFRSF13BO14836 293 aaPredicted RBP11.28□□□□□ -0.6
SFSWAP-210ENST00000541286 GCSHP23434 173 aa11.28□□□□□ -0.6
SFSWAP-210ENST00000541286 HIGD1AQ9Y241 93 aa11.28□□□□□ -0.6
SFSWAP-210ENST00000541286 C9orf118A6NHY6 69 aa11.27□□□□□ -0.61
SFSWAP-210ENST00000541286 C18orf15Q96N68 181 aa11.27□□□□□ -0.61
SFSWAP-210ENST00000541286 TMEM133Q9H2Q1 129 aa11.27□□□□□ -0.61
SFSWAP-210ENST00000541286 TSSC4Q9Y5U2 329 aaPredicted RBP11.27□□□□□ -0.61
SFSWAP-210ENST00000541286 IGHV3-35A0A0C4DH35 117 aa11.27□□□□□ -0.61
SFSWAP-210ENST00000541286 COX8AP10176 69 aa11.27□□□□□ -0.61
SFSWAP-210ENST00000541286 MC5RP33032 325 aa11.27□□□□□ -0.61
SFSWAP-210ENST00000541286 UFSP1Q6NVU6 142 aa11.27□□□□□ -0.61
SFSWAP-210ENST00000541286 SH2D6Q7Z4S9 175 aa11.27□□□□□ -0.61
SFSWAP-210ENST00000541286 NEU4Q8WWR8 484 aaPredicted RBP11.27□□□□□ -0.61
SFSWAP-210ENST00000541286 RASL11BQ9BPW5 248 aa11.27□□□□□ -0.61
SFSWAP-210ENST00000541286 LINC00574Q9H8X3 128 aa11.27□□□□□ -0.61
SFSWAP-210ENST00000541286 TCRAP04437 139 aa11.26□□□□□ -0.61
SFSWAP-210ENST00000541286 CACNG7P62955 275 aa11.26□□□□□ -0.61
SFSWAP-210ENST00000541286 SRSF12Q8WXF0 261 aaKnown RBP11.26□□□□□ -0.61
SFSWAP-210ENST00000541286 SMR3AQ99954 134 aa11.26□□□□□ -0.61
SFSWAP-210ENST00000541286 LIPFP07098 398 aa11.26□□□□□ -0.61
SFSWAP-210ENST00000541286 CEACAM3P40198 252 aa11.26□□□□□ -0.61
SFSWAP-210ENST00000541286 IFI27P40305 119 aaPredicted RBP11.26□□□□□ -0.61
SFSWAP-210ENST00000541286 Q96MF0 132 aa11.26□□□□□ -0.61
SFSWAP-210ENST00000541286 NPFFR1Q9GZQ6 430 aa11.26□□□□□ -0.61
SFSWAP-210ENST00000541286 CR1P17927 2039 aa11.26□□□□□ -0.61
SFSWAP-210ENST00000541286 K7EP34 96 aa11.26□□□□□ -0.61
SFSWAP-210ENST00000541286 IGHV3-23P01764 117 aa11.26□□□□□ -0.61
SFSWAP-210ENST00000541286 PPP1R27Q86WC6 154 aa11.26□□□□□ -0.61
SFSWAP-210ENST00000541286 STXBP6Q8NFX7 210 aa11.26□□□□□ -0.61
SFSWAP-210ENST00000541286 M0R3E3 92 aa11.25□□□□□ -0.61
SFSWAP-210ENST00000541286 FCGR2BP31994 310 aaPredicted RBP11.25□□□□□ -0.61
SFSWAP-210ENST00000541286 AMTNQ6UX39 209 aa11.25□□□□□ -0.61
SFSWAP-210ENST00000541286 SIGLEC9Q9Y336 463 aa11.25□□□□□ -0.61
SFSWAP-210ENST00000541286 CRXO43186 299 aaPredicted RBP11.25□□□□□ -0.61
SFSWAP-210ENST00000541286 LMO4P61968 165 aa11.25□□□□□ -0.61
SFSWAP-210ENST00000541286 PSG3Q16557 428 aa11.25□□□□□ -0.61
SFSWAP-210ENST00000541286 TMEM30BQ3MIR4 351 aa11.25□□□□□ -0.61
SFSWAP-210ENST00000541286 TNFRSF14Q92956 283 aa11.25□□□□□ -0.61
SFSWAP-210ENST00000541286 TIMD4Q96H15 378 aa11.25□□□□□ -0.61
SFSWAP-210ENST00000541286 OR2J3O76001 311 aa11.24□□□□□ -0.61
SFSWAP-210ENST00000541286 ATP5G2Q06055 141 aa11.24□□□□□ -0.61
SFSWAP-210ENST00000541286 TMEM155Q4W5P6 130 aa11.24□□□□□ -0.61
SFSWAP-210ENST00000541286 AP5S1Q9NUS5 200 aa11.24□□□□□ -0.61
SFSWAP-210ENST00000541286 HIVEP2P31629 2446 aa11.24□□□□□ -0.61
SFSWAP-210ENST00000541286 WFDC2Q14508 124 aa11.24□□□□□ -0.61
SFSWAP-210ENST00000541286 DEFB113Q30KQ7 82 aa11.24□□□□□ -0.61
SFSWAP-210ENST00000541286 SFTA2Q6UW10 78 aa11.24□□□□□ -0.61
SFSWAP-210ENST00000541286 FAM231DQ6ZW35 169 aa11.24□□□□□ -0.61
SFSWAP-210ENST00000541286 THAP8Q8NA92 274 aa11.24□□□□□ -0.61
SFSWAP-210ENST00000541286 C10orf105Q8TEF2 133 aa11.24□□□□□ -0.61
SFSWAP-210ENST00000541286 WIPF2Q8TF74 440 aaPredicted RBP11.24□□□□□ -0.61
SFSWAP-210ENST00000541286 IGHV1-3A0A0C4DH29 117 aa11.24□□□□□ -0.61
SFSWAP-210ENST00000541286 ARMS2P0C7Q2 107 aa11.24□□□□□ -0.61
SFSWAP-210ENST00000541286 FA2HQ7L5A8 372 aa11.24□□□□□ -0.61
SFSWAP-210ENST00000541286 KRTAP1-3Q8IUG1 177 aa11.24□□□□□ -0.61
SFSWAP-210ENST00000541286 A0A1B0GXF2 115 aa11.23□□□□□ -0.61
SFSWAP-210ENST00000541286 A6NDN8 102 aa11.23□□□□□ -0.61
SFSWAP-210ENST00000541286 SMKR1H3BMG3 65 aa11.23□□□□□ -0.61
SFSWAP-210ENST00000541286 FSTL3O95633 263 aa11.23□□□□□ -0.61
SFSWAP-210ENST00000541286 PPIFP30405 207 aaKnown RBP11.23□□□□□ -0.61
SFSWAP-210ENST00000541286 C8orf46Q8TAG6 207 aa11.23□□□□□ -0.61
SFSWAP-210ENST00000541286 SLC25A39Q9BZJ4 359 aaPredicted RBP11.23□□□□□ -0.61
SFSWAP-210ENST00000541286 HSPB8Q9UJY1 196 aa11.23□□□□□ -0.61
SFSWAP-210ENST00000541286 IL4P05112 153 aa11.23□□□□□ -0.61
SFSWAP-210ENST00000541286 PET117Q6UWS5 81 aa11.23□□□□□ -0.61
SFSWAP-210ENST00000541286 IL17RELQ6ZVW7 336 aa11.23□□□□□ -0.61
SFSWAP-210ENST00000541286 A0A1W2PPM0 123 aa11.22□□□□□ -0.61
SFSWAP-210ENST00000541286 GP9P14770 177 aa11.22□□□□□ -0.61
SFSWAP-210ENST00000541286 RAB9AP51151 201 aa11.22□□□□□ -0.61
SFSWAP-210ENST00000541286 SAMD5Q5TGI4 173 aa11.22□□□□□ -0.61
SFSWAP-210ENST00000541286 INSL3P51460 131 aa11.22□□□□□ -0.61
SFSWAP-210ENST00000541286 RPS20P60866 119 aaKnown RBP11.22□□□□□ -0.61
SFSWAP-210ENST00000541286 ADAMTSL5Q6ZMM2 481 aa11.22□□□□□ -0.61
SFSWAP-210ENST00000541286 RBPMS2Q6ZRY4 209 aaKnown RBP11.22□□□□□ -0.61
SFSWAP-210ENST00000541286 TRGV9Q99603 122 aa11.22□□□□□ -0.61
SFSWAP-210ENST00000541286 SIGMAR1Q99720 223 aa11.22□□□□□ -0.61
SFSWAP-210ENST00000541286 ZNF747Q9BV97 191 aa11.22□□□□□ -0.61
SFSWAP-210ENST00000541286 NSD1Q96L73 2696 aaPredicted RBP11.22□□□□□ -0.61
SFSWAP-210ENST00000541286 LTAP01374 205 aa11.22□□□□□ -0.61
SFSWAP-210ENST00000541286 FABP2P12104 132 aa11.22□□□□□ -0.61
SFSWAP-210ENST00000541286 ETDBQ3ZM63 59 aa11.22□□□□□ -0.61
SFSWAP-210ENST00000541286 IGFL4Q6B9Z1 124 aa11.22□□□□□ -0.61
SFSWAP-210ENST00000541286 BCL6BQ8N143 479 aaPredicted RBP11.22□□□□□ -0.61
SFSWAP-210ENST00000541286 TIMM23O14925 209 aa11.21□□□□□ -0.61
SFSWAP-210ENST00000541286 AVPP01185 164 aa11.21□□□□□ -0.61
SFSWAP-210ENST00000541286 MRGPRG-AS1Q2M3A8 158 aa11.21□□□□□ -0.61
SFSWAP-210ENST00000541286 NEGR1Q7Z3B1 354 aa11.21□□□□□ -0.61
SFSWAP-210ENST00000541286 PIP4P2Q8N4L2 257 aa11.21□□□□□ -0.61
SFSWAP-210ENST00000541286 CHCHD1Q96BP2 118 aaKnown RBP11.21□□□□□ -0.61
SFSWAP-210ENST00000541286 FMC1Q96HJ9 113 aa11.21□□□□□ -0.61
SFSWAP-210ENST00000541286 DKK2Q9UBU2 259 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms