RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 CAMPP49913 170 aa10.62□□□□□ -0.71
RTN3-210ENST00000540798 ASCL2Q99929 193 aa10.62□□□□□ -0.71
RTN3-210ENST00000540798 HIF1ANQ9NWT6 349 aa10.62□□□□□ -0.71
RTN3-210ENST00000540798 H3BUX3 64 aa10.62□□□□□ -0.71
RTN3-210ENST00000540798 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.62□□□□□ -0.71
RTN3-210ENST00000540798 IGHV3OR16-8A0A075B7F1 116 aa10.61□□□□□ -0.71
RTN3-210ENST00000540798 IGKV2-40A0A087WW87 121 aaPredicted RBP10.61□□□□□ -0.71
RTN3-210ENST00000540798 IGKV2D-40P01614 121 aaPredicted RBP10.61□□□□□ -0.71
RTN3-210ENST00000540798 PRR25Q96S07 402 aa10.61□□□□□ -0.71
RTN3-210ENST00000540798 ZNF324O75467 553 aaPredicted RBP10.6□□□□□ -0.71
RTN3-210ENST00000540798 OCIAD2Q56VL3 154 aa10.6□□□□□ -0.71
RTN3-210ENST00000540798 PSMG3-AS1Q96PY0 264 aa10.6□□□□□ -0.71
RTN3-210ENST00000540798 PRB4P10163 310 aaPredicted RBP10.6□□□□□ -0.71
RTN3-210ENST00000540798 HLA-DMBP28068 263 aa10.6□□□□□ -0.71
RTN3-210ENST00000540798 Q6AWC8 147 aa10.6□□□□□ -0.71
RTN3-210ENST00000540798 SAMD10Q9BYL1 202 aa10.6□□□□□ -0.71
RTN3-210ENST00000540798 CST9LQ9H4G1 147 aa10.6□□□□□ -0.71
RTN3-210ENST00000540798 CLEC5AQ9NY25 188 aa10.6□□□□□ -0.71
RTN3-210ENST00000540798 ZNF580Q9UK33 172 aa10.6□□□□□ -0.71
RTN3-210ENST00000540798 RNF114Q9Y508 228 aa10.6□□□□□ -0.71
RTN3-210ENST00000540798 RBAKDNA6NC62 111 aa10.6□□□□□ -0.71
RTN3-210ENST00000540798 LCN12Q6JVE5 192 aa10.6□□□□□ -0.71
RTN3-210ENST00000540798 SIGLECL1Q8N7X8 197 aa10.6□□□□□ -0.71
RTN3-210ENST00000540798 SLC50A1Q9BRV3 221 aa10.6□□□□□ -0.71
RTN3-210ENST00000540798 LINC00527Q9UJ94 153 aa10.6□□□□□ -0.71
RTN3-210ENST00000540798 TRGV3P03979 118 aa10.59□□□□□ -0.71
RTN3-210ENST00000540798 LY6EQ16553 131 aa10.59□□□□□ -0.71
RTN3-210ENST00000540798 METTL26Q96S19 204 aa10.59□□□□□ -0.71
RTN3-210ENST00000540798 VGLL1Q99990 258 aa10.59□□□□□ -0.71
RTN3-210ENST00000540798 SPTAN1Q13813 2472 aaKnown RBP10.59□□□□□ -0.71
RTN3-210ENST00000540798 FBN2P35556 2912 aa10.59□□□□□ -0.71
RTN3-210ENST00000540798 A0A1B0GW15 77 aa10.59□□□□□ -0.71
RTN3-210ENST00000540798 SH2D1AO60880 128 aa10.59□□□□□ -0.71
RTN3-210ENST00000540798 CT45A10P0DMU9 189 aa10.59□□□□□ -0.71
RTN3-210ENST00000540798 COX6B1P14854 86 aa10.59□□□□□ -0.71
RTN3-210ENST00000540798 SRSF2Q01130 221 aaKnown RBP10.59□□□□□ -0.71
RTN3-210ENST00000540798 NIT1Q86X76 327 aa10.59□□□□□ -0.71
RTN3-210ENST00000540798 Q8N976 141 aa10.59□□□□□ -0.71
RTN3-210ENST00000540798 LINC01356Q8N9X3 169 aa10.59□□□□□ -0.71
RTN3-210ENST00000540798 HELZ2Q9BYK8 2649 aaKnown RBP10.58□□□□□ -0.72
RTN3-210ENST00000540798 A0A1B0GUT8 65 aa10.58□□□□□ -0.72
RTN3-210ENST00000540798 CFHR3Q02985 330 aa10.58□□□□□ -0.72
RTN3-210ENST00000540798 FAM162BQ5T6X4 162 aa10.58□□□□□ -0.72
RTN3-210ENST00000540798 IGFL4Q6B9Z1 124 aa10.58□□□□□ -0.72
RTN3-210ENST00000540798 TEX43Q6ZNM6 134 aa10.58□□□□□ -0.72
RTN3-210ENST00000540798 ORAOV1Q8WV07 137 aa10.58□□□□□ -0.72
RTN3-210ENST00000540798 MRPL53Q96EL3 112 aaKnown RBP10.58□□□□□ -0.72
RTN3-210ENST00000540798 URB1-AS1Q96HZ7 61 aa10.58□□□□□ -0.72
RTN3-210ENST00000540798 USMG5Q96IX5 58 aa10.58□□□□□ -0.72
RTN3-210ENST00000540798 NDFIP1Q9BT67 221 aa10.58□□□□□ -0.72
RTN3-210ENST00000540798 NRN1Q9NPD7 142 aa10.58□□□□□ -0.72
RTN3-210ENST00000540798 CRYBG3Q68DQ2 2970 aa10.58□□□□□ -0.72
RTN3-210ENST00000540798 TRAV8-2A0A0B4J237 113 aa10.58□□□□□ -0.72
RTN3-210ENST00000540798 IGLV1-40P01703 118 aa10.58□□□□□ -0.72
RTN3-210ENST00000540798 VAMP8Q9BV40 100 aa10.58□□□□□ -0.72
RTN3-210ENST00000540798 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.58□□□□□ -0.72
RTN3-210ENST00000540798 AMTP48728 403 aa10.58□□□□□ -0.72
RTN3-210ENST00000540798 ZNF575Q86XF7 245 aa10.58□□□□□ -0.72
RTN3-210ENST00000540798 GCN1Q92616 2671 aaKnown RBP10.57□□□□□ -0.72
RTN3-210ENST00000540798 MYO18BQ8IUG5 2567 aa10.57□□□□□ -0.72
RTN3-210ENST00000540798 J3QLI3 93 aa10.57□□□□□ -0.72
RTN3-210ENST00000540798 SAP30O75446 220 aa10.57□□□□□ -0.72
RTN3-210ENST00000540798 ARMS2P0C7Q2 107 aa10.57□□□□□ -0.72
RTN3-210ENST00000540798 VAMP3Q15836 100 aa10.57□□□□□ -0.72
RTN3-210ENST00000540798 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.57□□□□□ -0.721e-8■■■■□ 24
RTN3-210ENST00000540798 ARL3P36405 182 aa10.57□□□□□ -0.72
RTN3-210ENST00000540798 BLCAPP62952 87 aa10.57□□□□□ -0.72
RTN3-210ENST00000540798 RIGQ13278 110 aa10.57□□□□□ -0.72
RTN3-210ENST00000540798 GLMPQ8WWB7 406 aa10.57□□□□□ -0.72
RTN3-210ENST00000540798 C20orf144Q9BQM9 153 aa10.57□□□□□ -0.72
RTN3-210ENST00000540798 PRAC2D3DTV9 90 aa10.56□□□□□ -0.72
RTN3-210ENST00000540798 NDUFA4O00483 81 aa10.56□□□□□ -0.72
RTN3-210ENST00000540798 ZNF80P51504 273 aaPredicted RBP10.56□□□□□ -0.72
RTN3-210ENST00000540798 ZNF493Q6ZR52 646 aa10.56□□□□□ -0.72
RTN3-210ENST00000540798 Q6ZS46 218 aa10.56□□□□□ -0.72
RTN3-210ENST00000540798 COX11Q9Y6N1 276 aa10.56□□□□□ -0.72
RTN3-210ENST00000540798 Q8TAT8 98 aa10.56□□□□□ -0.72
RTN3-210ENST00000540798 IGHV3-66A0A0C4DH42 116 aa10.56□□□□□ -0.72
RTN3-210ENST00000540798 TMEM189A5PLL7 270 aa10.56□□□□□ -0.72
RTN3-210ENST00000540798 PMCHP20382 165 aa10.56□□□□□ -0.72
RTN3-210ENST00000540798 BAHCC1Q9P281 2608 aa10.55□□□□□ -0.72
RTN3-210ENST00000540798 TRBV12-3P01733 135 aa10.55□□□□□ -0.72
RTN3-210ENST00000540798 Q6ZN92 141 aa10.55□□□□□ -0.72
RTN3-210ENST00000540798 C8orf86Q6ZUL3 223 aa10.55□□□□□ -0.72
RTN3-210ENST00000540798 RNF182Q8N6D2 247 aa10.55□□□□□ -0.72
RTN3-210ENST00000540798 TP73-AS1Q9UF72 201 aa10.55□□□□□ -0.72
RTN3-210ENST00000540798 LAMTOR2Q9Y2Q5 125 aa10.55□□□□□ -0.72
RTN3-210ENST00000540798 CSMD2Q7Z408 3487 aa10.55□□□□□ -0.72
RTN3-210ENST00000540798 LOXL1Q08397 574 aaPredicted RBP10.55□□□□□ -0.72
RTN3-210ENST00000540798 ZNF738Q8NE65 137 aa10.55□□□□□ -0.72
RTN3-210ENST00000540798 FSHBP01225 129 aa10.54□□□□□ -0.72
RTN3-210ENST00000540798 RPS20P60866 119 aaKnown RBP10.54□□□□□ -0.72
RTN3-210ENST00000540798 FAM19A2Q8N3H0 131 aa10.54□□□□□ -0.72
RTN3-210ENST00000540798 ZNF207O43670 478 aaKnown RBP10.54□□□□□ -0.72
RTN3-210ENST00000540798 CTRLP40313 264 aa10.54□□□□□ -0.72
RTN3-210ENST00000540798 PRR31Q5SQ13 230 aa10.54□□□□□ -0.72
RTN3-210ENST00000540798 UNQ9165/PRO28630Q6UXU0 137 aa10.54□□□□□ -0.72
RTN3-210ENST00000540798 KLK15Q9H2R5 256 aa10.54□□□□□ -0.72
RTN3-210ENST00000540798 IGLC6P0CF74 106 aa10.53□□□□□ -0.72
RTN3-210ENST00000540798 ERCC8Q13216 396 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms