RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-208	ENST00000540447		Q6P435	159 aa		7	□□□□□ -1.29
YBX3-208	ENST00000540447	SDIM1	Q6ZPB5	146 aa		7	□□□□□ -1.29
YBX3-208	ENST00000540447	PRR25	Q96S07	402 aa		7	□□□□□ -1.29
YBX3-208	ENST00000540447	TRAV4	A0A0B4J268	109 aa		7	□□□□□ -1.29
YBX3-208	ENST00000540447	IGHV3-11	P01762	117 aa		7	□□□□□ -1.29
YBX3-208	ENST00000540447	PAX8	Q06710	450 aa		7	□□□□□ -1.29
YBX3-208	ENST00000540447	LOXL1	Q08397	574 aa	Predicted RBP	7	□□□□□ -1.29
YBX3-208	ENST00000540447	PRR7	Q8TB68	274 aa		7	□□□□□ -1.29
YBX3-208	ENST00000540447	FXYD5	Q96DB9	178 aa		7	□□□□□ -1.29
YBX3-208	ENST00000540447	SLC25A45	Q8N413	288 aa		7	□□□□□ -1.29
YBX3-208	ENST00000540447	FRMD6-AS1	P0C7T7	363 aa		6.99	□□□□□ -1.29
YBX3-208	ENST00000540447	ODF1	Q14990	250 aa		6.99	□□□□□ -1.29
YBX3-208	ENST00000540447	IMUP	Q9GZP8	106 aa		6.99	□□□□□ -1.29
YBX3-208	ENST00000540447	COL24A1	Q17RW2	1714 aa		6.99	□□□□□ -1.29
YBX3-208	ENST00000540447		H0YGX0	51 aa		6.99	□□□□□ -1.29
YBX3-208	ENST00000540447	MP68	P56378	58 aa		6.99	□□□□□ -1.29
YBX3-208	ENST00000540447	MRPL14	Q6P1L8	145 aa	Known RBP	6.99	□□□□□ -1.29
YBX3-208	ENST00000540447		Q6ZT83	130 aa		6.99	□□□□□ -1.29
YBX3-208	ENST00000540447	SERP2	Q8N6R1	65 aa		6.99	□□□□□ -1.29
YBX3-208	ENST00000540447	SEC16A	O15027	2179 aa		6.99	□□□□□ -1.29
YBX3-208	ENST00000540447	LYPD6	Q86Y78	171 aa		6.99	□□□□□ -1.29
YBX3-208	ENST00000540447	YPEL4	Q96NS1	127 aa		6.99	□□□□□ -1.29
YBX3-208	ENST00000540447	TPR	P12270	2363 aa	Known RBP	6.99	□□□□□ -1.29
YBX3-208	ENST00000540447	CRYGC	P07315	174 aa		6.99	□□□□□ -1.29
YBX3-208	ENST00000540447	FUS	P35637	526 aa	Known RBP eCLIP	6.99	□□□□□ -1.29
YBX3-208	ENST00000540447	TMEM14B	Q9NUH8	114 aa		6.99	□□□□□ -1.29
YBX3-208	ENST00000540447	OOSP1	A8MZH6	123 aa		6.99	□□□□□ -1.29
YBX3-208	ENST00000540447	ATP5E	P56381	51 aa	Predicted RBP	6.99	□□□□□ -1.29
YBX3-208	ENST00000540447	RHOH	Q15669	191 aa		6.99	□□□□□ -1.29
YBX3-208	ENST00000540447	C1orf147	Q96MC9	270 aa	Predicted RBP	6.99	□□□□□ -1.29
YBX3-208	ENST00000540447	LOC285556	D6RIA3	1793 aa		6.98	□□□□□ -1.29
YBX3-208	ENST00000540447	MARF1	Q9Y4F3	1742 aa	Known RBP	6.98	□□□□□ -1.29
YBX3-208	ENST00000540447	RBAKDN	A6NC62	111 aa		6.98	□□□□□ -1.29
YBX3-208	ENST00000540447	RPP25	Q9BUL9	199 aa	Known RBP	6.98	□□□□□ -1.29
YBX3-208	ENST00000540447	KIAA1217	Q5T5P2	1943 aa		6.98	□□□□□ -1.29
YBX3-208	ENST00000540447	NRAP	Q86VF7	1730 aa		6.98	□□□□□ -1.29
YBX3-208	ENST00000540447	UCN	P55089	124 aa		6.98	□□□□□ -1.29
YBX3-208	ENST00000540447	TAF1L	Q8IZX4	1826 aa		6.98	□□□□□ -1.29
YBX3-208	ENST00000540447	ELANE	P08246	267 aa		6.98	□□□□□ -1.29
YBX3-208	ENST00000540447	TM4SF4	P48230	202 aa		6.98	□□□□□ -1.29
YBX3-208	ENST00000540447	TM2D2	Q9BX73	214 aa		6.98	□□□□□ -1.29
YBX3-208	ENST00000540447	SMIM26	A0A096LP01	95 aa		6.98	□□□□□ -1.29
YBX3-208	ENST00000540447	SS18	Q15532	418 aa		6.97	□□□□□ -1.29
YBX3-208	ENST00000540447		Q6ZR03	302 aa		6.97	□□□□□ -1.29
YBX3-208	ENST00000540447	CFHR4	Q92496	578 aa		6.97	□□□□□ -1.29
YBX3-208	ENST00000540447	UPK3B	Q9BT76	320 aa		6.97	□□□□□ -1.29
YBX3-208	ENST00000540447	TMEM14C	Q9P0S9	112 aa		6.97	□□□□□ -1.29
YBX3-208	ENST00000540447	PRR20E	P86478	221 aa		6.97	□□□□□ -1.29
YBX3-208	ENST00000540447	PRR20C	P86479	221 aa		6.97	□□□□□ -1.29
YBX3-208	ENST00000540447	PRR20D	P86480	221 aa		6.97	□□□□□ -1.29
YBX3-208	ENST00000540447	PRR20B	P86481	221 aa		6.97	□□□□□ -1.29
YBX3-208	ENST00000540447	PRR20A	P86496	221 aa		6.97	□□□□□ -1.29
YBX3-208	ENST00000540447	TMEM61	Q8N0U2	210 aa		6.97	□□□□□ -1.29
YBX3-208	ENST00000540447	KLK10	O43240	276 aa		6.97	□□□□□ -1.29
YBX3-208	ENST00000540447	RFPL3S	P0C7P2	107 aa		6.97	□□□□□ -1.29
YBX3-208	ENST00000540447	PCOLCE	Q15113	449 aa		6.97	□□□□□ -1.29
YBX3-208	ENST00000540447		Q6Q795	121 aa		6.97	□□□□□ -1.29
YBX3-208	ENST00000540447	DYNAP	Q8N1N2	210 aa		6.97	□□□□□ -1.29
YBX3-208	ENST00000540447	NRGN	Q92686	78 aa		6.97	□□□□□ -1.29
YBX3-208	ENST00000540447	JMJD7-PLA2G4B	H0Y9G9	81 aa		6.97	□□□□□ -1.29
YBX3-208	ENST00000540447	GATA1	P15976	413 aa	Predicted RBP	6.97	□□□□□ -1.29
YBX3-208	ENST00000540447	FHL1	Q13642	323 aa		6.97	□□□□□ -1.29
YBX3-208	ENST00000540447	SLC22A18AS	Q8N1D0	253 aa		6.97	□□□□□ -1.29
YBX3-208	ENST00000540447	PPDPF	Q9H3Y8	114 aa		6.97	□□□□□ -1.29
YBX3-208	ENST00000540447	IGF2BP2-AS1	Q96M15	143 aa		6.97	□□□□□ -1.29
YBX3-208	ENST00000540447	DOCK4	Q8N1I0	1966 aa		6.97	□□□□□ -1.29
YBX3-208	ENST00000540447	PHLPP1	O60346	1717 aa		6.97	□□□□□ -1.29
YBX3-208	ENST00000540447	NXPH4	O95158	308 aa		6.96	□□□□□ -1.29
YBX3-208	ENST00000540447	C15orf32	Q32M92	178 aa		6.96	□□□□□ -1.29
YBX3-208	ENST00000540447		Q9H8V8	135 aa		6.96	□□□□□ -1.29
YBX3-208	ENST00000540447	MYLK	Q15746	1914 aa		6.96	□□□□□ -1.29
YBX3-208	ENST00000540447	IGHV1-69D	A0A0B4J2H0	117 aa		6.96	□□□□□ -1.29
YBX3-208	ENST00000540447	EFNA2	O43921	213 aa		6.96	□□□□□ -1.29
YBX3-208	ENST00000540447	INSL3	P51460	131 aa		6.96	□□□□□ -1.29
YBX3-208	ENST00000540447	ZNF503	Q96F45	646 aa		6.96	□□□□□ -1.29
YBX3-208	ENST00000540447	STRCP1	A6NGW2	1772 aa		6.96	□□□□□ -1.29
YBX3-208	ENST00000540447	STH	Q8IWL8	128 aa		6.96	□□□□□ -1.3
YBX3-208	ENST00000540447	FANCD2OS	Q96PS1	177 aa		6.96	□□□□□ -1.3
YBX3-208	ENST00000540447	ICE1	Q9Y2F5	2266 aa		6.96	□□□□□ -1.3
YBX3-208	ENST00000540447	PI4KA	P42356	2102 aa		6.96	□□□□□ -1.3
YBX3-208	ENST00000540447	MCM3AP	O60318	1980 aa		6.96	□□□□□ -1.3
YBX3-208	ENST00000540447	LINC01565	O15544	149 aa		6.96	□□□□□ -1.3
YBX3-208	ENST00000540447	RPL18A	Q02543	176 aa	Known RBP	6.95	□□□□□ -1.3
YBX3-208	ENST00000540447	METRN	Q9UJH8	293 aa		6.95	□□□□□ -1.3
YBX3-208	ENST00000540447	CD177	Q8N6Q3	437 aa		6.95	□□□□□ -1.3
YBX3-208	ENST00000540447	TDRD15	B5MCY1	1934 aa	Known RBP	6.95	□□□□□ -1.3
YBX3-208	ENST00000540447	DOCK5	Q9H7D0	1870 aa		6.95	□□□□□ -1.3
YBX3-208	ENST00000540447	PTPRD	P23468	1912 aa		6.95	□□□□□ -1.3
YBX3-208	ENST00000540447	C14orf132	Q9NPU4	83 aa		6.95	□□□□□ -1.3
YBX3-208	ENST00000540447	MTCL1	Q9Y4B5	1905 aa	Known RBP	6.95	□□□□□ -1.3
YBX3-208	ENST00000540447	FANCM	Q8IYD8	2048 aa		6.95	□□□□□ -1.3
YBX3-208	ENST00000540447	IGKV1-16	P04430	117 aa		6.95	□□□□□ -1.3
YBX3-208	ENST00000540447	RNASE13	Q5GAN3	156 aa	Known RBP	6.95	□□□□□ -1.3
YBX3-208	ENST00000540447	COLCA1	Q6ZS62	124 aa		6.95	□□□□□ -1.3
YBX3-208	ENST00000540447	MLST8	Q9BVC4	326 aa		6.95	□□□□□ -1.3
YBX3-208	ENST00000540447	ANKHD1-EIF4EBP3	H7C0V5	636 aa	Predicted RBP	6.94	□□□□□ -1.3
YBX3-208	ENST00000540447		K7EM74	188 aa		6.94	□□□□□ -1.3
YBX3-208	ENST00000540447	CCL21	O00585	134 aa		6.94	□□□□□ -1.3
YBX3-208	ENST00000540447	NDUFC1	O43677	76 aa		6.94	□□□□□ -1.3
YBX3-208	ENST00000540447	DKK1	O94907	266 aa		6.94	□□□□□ -1.3

Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms