RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 C2orf70A6NJV1 201 aa13.1□□□□□ -0.31
USP28-208ENST00000540438 LINC00614P0C842 121 aa13.1□□□□□ -0.31
USP28-208ENST00000540438 IL17RELQ6ZVW7 336 aa13.1□□□□□ -0.31
USP28-208ENST00000540438 GLMPQ8WWB7 406 aa13.1□□□□□ -0.31
USP28-208ENST00000540438 LEPROTL1O95214 131 aa13.09□□□□□ -0.31
USP28-208ENST00000540438 GATA1P15976 413 aaPredicted RBP13.09□□□□□ -0.31
USP28-208ENST00000540438 EDN2P20800 178 aa13.09□□□□□ -0.31
USP28-208ENST00000540438 NUTF2P61970 127 aaKnown RBP13.09□□□□□ -0.31
USP28-208ENST00000540438 TWIST1Q15672 202 aa13.09□□□□□ -0.31
USP28-208ENST00000540438 WIPF2Q8TF74 440 aaPredicted RBP13.09□□□□□ -0.31
USP28-208ENST00000540438 RAB4AP20338 218 aa13.09□□□□□ -0.31
USP28-208ENST00000540438 UBE2E1P51965 193 aa13.09□□□□□ -0.31
USP28-208ENST00000540438 FOXE3Q13461 319 aa13.09□□□□□ -0.31
USP28-208ENST00000540438 IGHV4-30-2A0A087WSY4 118 aa13.08□□□□□ -0.32
USP28-208ENST00000540438 OVOL3O00110 214 aa13.08□□□□□ -0.32
USP28-208ENST00000540438 EVI2AP22794 236 aa13.08□□□□□ -0.32
USP28-208ENST00000540438 OR8A1Q8NGG7 326 aa13.08□□□□□ -0.32
USP28-208ENST00000540438 PRSS3P2Q8NHM4 247 aa13.08□□□□□ -0.32
USP28-208ENST00000540438 BTF3P20290 206 aaKnown RBP13.08□□□□□ -0.32
USP28-208ENST00000540438 KLK15Q9H2R5 256 aa13.08□□□□□ -0.32
USP28-208ENST00000540438 ATP5J2P56134 94 aa13.07□□□□□ -0.32
USP28-208ENST00000540438 CHD6Q8TD26 2715 aa13.07□□□□□ -0.32
USP28-208ENST00000540438 OR4C46A6NHA9 309 aa13.07□□□□□ -0.32
USP28-208ENST00000540438 HNRNPA3P51991 378 aaKnown RBP13.07□□□□□ -0.32
USP28-208ENST00000540438 STPG4Q8N801 248 aa13.07□□□□□ -0.32
USP28-208ENST00000540438 PRR25Q96S07 402 aa13.07□□□□□ -0.32
USP28-208ENST00000540438 ZNF492Q9P255 531 aa13.07□□□□□ -0.32
USP28-208ENST00000540438 IGLC3P0DOY3 106 aa13.07□□□□□ -0.32
USP28-208ENST00000540438 RPL7P18124 248 aaKnown RBP13.07□□□□□ -0.32
USP28-208ENST00000540438 COX19Q49B96 90 aa13.07□□□□□ -0.32
USP28-208ENST00000540438 UNQ9165/PRO28630Q6UXU0 137 aa13.07□□□□□ -0.32
USP28-208ENST00000540438 C18orf15Q96N68 181 aa13.06□□□□□ -0.32
USP28-208ENST00000540438 C20orf144Q9BQM9 153 aa13.06□□□□□ -0.32
USP28-208ENST00000540438 JMJD1CQ15652 2540 aa13.06□□□□□ -0.32
USP28-208ENST00000540438 AGRNO00468 2067 aa13.06□□□□□ -0.32
USP28-208ENST00000540438 TRAV30A0A087WSZ9 112 aa13.05□□□□□ -0.32
USP28-208ENST00000540438 NPIPB6E9PJ23 425 aa13.05□□□□□ -0.32
USP28-208ENST00000540438 F6UB75 175 aa13.05□□□□□ -0.32
USP28-208ENST00000540438 H3BUX3 64 aa13.05□□□□□ -0.32
USP28-208ENST00000540438 TRGV3P03979 118 aa13.05□□□□□ -0.32
USP28-208ENST00000540438 CTRLP40313 264 aa13.05□□□□□ -0.32
USP28-208ENST00000540438 C10orf99Q6UWK7 81 aa13.05□□□□□ -0.32
USP28-208ENST00000540438 OR4B1Q8NGF8 309 aa13.05□□□□□ -0.32
USP28-208ENST00000540438 ZNF502Q8TBZ5 544 aa13.05□□□□□ -0.32
USP28-208ENST00000540438 CCL19Q99731 98 aa13.05□□□□□ -0.32
USP28-208ENST00000540438 AVPP01185 164 aa13.05□□□□□ -0.32
USP28-208ENST00000540438 ATP5L2Q7Z4Y8 100 aa13.05□□□□□ -0.32
USP28-208ENST00000540438 TMEM70Q9BUB7 260 aa13.05□□□□□ -0.32
USP28-208ENST00000540438 KIR3DS1Q14943 382 aa13.05□□□□□ -0.32
USP28-208ENST00000540438 MINOS1Q5TGZ0 78 aa13.05□□□□□ -0.32
USP28-208ENST00000540438 PRORYQ9H606 182 aa13.05□□□□□ -0.32
USP28-208ENST00000540438 ZFP30Q9Y2G7 519 aa13.05□□□□□ -0.32
USP28-208ENST00000540438 MINOS1-NBL1R4GNA1 71 aa13.05□□□□□ -0.32
USP28-208ENST00000540438 NPSP0C0P6 89 aa13.04□□□□□ -0.32
USP28-208ENST00000540438 TRAV26-2A0A0B4J265 109 aa13.04□□□□□ -0.32
USP28-208ENST00000540438 CLPSL1A2RUU4 121 aa13.04□□□□□ -0.32
USP28-208ENST00000540438 FAM162BQ5T6X4 162 aa13.04□□□□□ -0.32
USP28-208ENST00000540438 DUX5Q96PT3 197 aa13.04□□□□□ -0.32
USP28-208ENST00000540438 PRRC2AP48634 2157 aaKnown RBP13.04□□□□□ -0.32
USP28-208ENST00000540438 C2CD3Q4AC94 2353 aa13.03□□□□□ -0.32
USP28-208ENST00000540438 BUB3O43684 328 aa13.03□□□□□ -0.32
USP28-208ENST00000540438 KLF5Q13887 457 aaPredicted RBP13.03□□□□□ -0.32
USP28-208ENST00000540438 PF4V1P10720 104 aa13.03□□□□□ -0.32
USP28-208ENST00000540438 RIGQ13278 110 aa13.03□□□□□ -0.32
USP28-208ENST00000540438 HAX1O00165 279 aa13.02□□□□□ -0.32
USP28-208ENST00000540438 PRSS57Q6UWY2 283 aa13.02□□□□□ -0.32
USP28-208ENST00000540438 FA2HQ7L5A8 372 aa13.02□□□□□ -0.32
USP28-208ENST00000540438 C5orf56Q8N8D9 126 aa13.02□□□□□ -0.32
USP28-208ENST00000540438 ZFAND3Q9H8U3 227 aa13.02□□□□□ -0.32
USP28-208ENST00000540438 C11orf21Q9P2W6 132 aa13.02□□□□□ -0.32
USP28-208ENST00000540438 SYS1-DBNDD2H3BUS1 97 aa13.02□□□□□ -0.33
USP28-208ENST00000540438 SMAD7O15105 426 aaKnown RBP13.02□□□□□ -0.33
USP28-208ENST00000540438 RASL11AQ6T310 242 aa13.02□□□□□ -0.33
USP28-208ENST00000540438 PIFOQ8TCI5 191 aa13.02□□□□□ -0.33
USP28-208ENST00000540438 SRSF8Q9BRL6 282 aaKnown RBP13.02□□□□□ -0.33
USP28-208ENST00000540438 AP5S1Q9NUS5 200 aa13.02□□□□□ -0.33
USP28-208ENST00000540438 GOSR1O95249 250 aa13.01□□□□□ -0.33
USP28-208ENST00000540438 EBI3Q14213 229 aa13.01□□□□□ -0.33
USP28-208ENST00000540438 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.01□□□□□ -0.33
USP28-208ENST00000540438 FAM110DQ8TAY7 271 aaPredicted RBP13.01□□□□□ -0.33
USP28-208ENST00000540438 AGPAT4-IT1Q9H0P7 198 aa13.01□□□□□ -0.33
USP28-208ENST00000540438 TRAV41A0A0B4J266 112 aa13.01□□□□□ -0.33
USP28-208ENST00000540438 NPYP01303 97 aa13.01□□□□□ -0.33
USP28-208ENST00000540438 C1orf122Q6ZSJ8 110 aa13.01□□□□□ -0.33
USP28-208ENST00000540438 RPLP1P05386 114 aaKnown RBP13□□□□□ -0.33
USP28-208ENST00000540438 CKS2P33552 79 aa13□□□□□ -0.33
USP28-208ENST00000540438 MRPL51Q4U2R6 128 aaKnown RBP13□□□□□ -0.33
USP28-208ENST00000540438 CT83Q5H943 113 aa13□□□□□ -0.33
USP28-208ENST00000540438 FER1L6-AS1Q8NA97 138 aa13□□□□□ -0.33
USP28-208ENST00000540438 PRELID3AQ96N28 172 aa13□□□□□ -0.33
USP28-208ENST00000540438 UQCR10Q9UDW1 63 aa13□□□□□ -0.33
USP28-208ENST00000540438 APCP25054 2843 aa13□□□□□ -0.33
USP28-208ENST00000540438 ATP5G2Q06055 141 aa13□□□□□ -0.33
USP28-208ENST00000540438 ZNF575Q86XF7 245 aa13□□□□□ -0.33
USP28-208ENST00000540438 SIGLEC8Q9NYZ4 499 aa13□□□□□ -0.33
USP28-208ENST00000540438 UFC1Q9Y3C8 167 aa13□□□□□ -0.33
USP28-208ENST00000540438 TSPOP30536 169 aa12.99□□□□□ -0.33
USP28-208ENST00000540438 PSG9Q00887 426 aa12.99□□□□□ -0.33
USP28-208ENST00000540438 TMEM208Q9BTX3 173 aa12.99□□□□□ -0.33
USP28-208ENST00000540438 LAMTOR2Q9Y2Q5 125 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms