RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 CRISP2P16562 243 aa8.16□□□□□ -1.1
RTN3-209ENST00000538995 ATP5G3P48201 142 aa8.16□□□□□ -1.1
RTN3-209ENST00000538995 ICAM4Q14773 271 aa8.16□□□□□ -1.1
RTN3-209ENST00000538995 RNF212Q495C1 297 aa8.16□□□□□ -1.1
RTN3-209ENST00000538995 KHDC3LQ587J8 217 aa8.16□□□□□ -1.1
RTN3-209ENST00000538995 FFAR4Q5NUL3 377 aa8.16□□□□□ -1.1
RTN3-209ENST00000538995 LYPD1Q8N2G4 141 aa8.16□□□□□ -1.1
RTN3-209ENST00000538995 EXOC3-AS1Q8N2X6 119 aa8.16□□□□□ -1.1
RTN3-209ENST00000538995 RNF141Q8WVD5 230 aa8.16□□□□□ -1.1
RTN3-209ENST00000538995 ASB13Q8WXK3 278 aa8.16□□□□□ -1.1
RTN3-209ENST00000538995 LINC00467Q9BRT7 94 aa8.16□□□□□ -1.1
RTN3-209ENST00000538995 TRBV7-9A0A0J9YWB2 115 aa8.15□□□□□ -1.1
RTN3-209ENST00000538995 OR10J4P0C629 311 aa8.15□□□□□ -1.1
RTN3-209ENST00000538995 FAM3BP58499 235 aaPredicted RBP8.15□□□□□ -1.1
RTN3-209ENST00000538995 UBE2L3P68036 154 aaKnown RBP8.15□□□□□ -1.1
RTN3-209ENST00000538995 ERCC8Q13216 396 aa8.15□□□□□ -1.1
RTN3-209ENST00000538995 TMEM78Q5T7P6 136 aa8.15□□□□□ -1.1
RTN3-209ENST00000538995 UBE2DNLQ8IWF7 75 aa8.15□□□□□ -1.1
RTN3-209ENST00000538995 LINC00612Q8N6U2 182 aa8.15□□□□□ -1.1
RTN3-209ENST00000538995 ZNF680Q8NEM1 530 aa8.15□□□□□ -1.1
RTN3-209ENST00000538995 PHYHIPLQ96FC7 376 aa8.15□□□□□ -1.1
RTN3-209ENST00000538995 SMIM3Q9BZL3 60 aa8.15□□□□□ -1.1
RTN3-209ENST00000538995 AGPAT4-IT1Q9H0P7 198 aa8.15□□□□□ -1.1
RTN3-209ENST00000538995 MED28Q9H204 178 aa8.15□□□□□ -1.1
RTN3-209ENST00000538995 NOP10Q9NPE3 64 aaKnown RBP8.15□□□□□ -1.1
RTN3-209ENST00000538995 IGKV2-40A0A087WW87 121 aaPredicted RBP8.14□□□□□ -1.11
RTN3-209ENST00000538995 TRAV12-3A0A0B4J271 114 aa8.14□□□□□ -1.11
RTN3-209ENST00000538995 RBAKDNA6NC62 111 aa8.14□□□□□ -1.11
RTN3-209ENST00000538995 SNURFLB1AK76 121 aa8.14□□□□□ -1.11
RTN3-209ENST00000538995 F5H768 121 aa8.14□□□□□ -1.11
RTN3-209ENST00000538995 J3KRW8 73 aa8.14□□□□□ -1.11
RTN3-209ENST00000538995 IGKV2D-40P01614 121 aaPredicted RBP8.14□□□□□ -1.11
RTN3-209ENST00000538995 M6PRP20645 277 aa8.14□□□□□ -1.11
RTN3-209ENST00000538995 CSN1S1P47710 185 aa8.14□□□□□ -1.11
RTN3-209ENST00000538995 DAZ2Q13117 558 aaKnown RBP8.14□□□□□ -1.11
RTN3-209ENST00000538995 ZNF266Q14584 549 aa8.14□□□□□ -1.11
RTN3-209ENST00000538995 ACOT6Q3I5F7 207 aaPredicted RBP8.14□□□□□ -1.11
RTN3-209ENST00000538995 FAM122CQ6P4D5 195 aa8.14□□□□□ -1.11
RTN3-209ENST00000538995 ZNF503Q96F45 646 aa8.14□□□□□ -1.11
RTN3-209ENST00000538995 KRTAP17-1Q9BYP8 105 aa8.14□□□□□ -1.11
RTN3-209ENST00000538995 WFDC1Q9HC57 220 aa8.14□□□□□ -1.11
RTN3-209ENST00000538995 ZNF324O75467 553 aaPredicted RBP8.13□□□□□ -1.11
RTN3-209ENST00000538995 GIPP09681 153 aaPredicted RBP8.13□□□□□ -1.11
RTN3-209ENST00000538995 FCN2Q15485 313 aa8.13□□□□□ -1.11
RTN3-209ENST00000538995 LGALS9BQ3B8N2 356 aa8.13□□□□□ -1.11
RTN3-209ENST00000538995 ANXA2RQ3ZCQ2 193 aa8.13□□□□□ -1.11
RTN3-209ENST00000538995 PQLC2Q6ZP29 291 aa8.13□□□□□ -1.11
RTN3-209ENST00000538995 LINC00336Q6ZUF6 198 aa8.13□□□□□ -1.11
RTN3-209ENST00000538995 ZFAND2AQ8N6M9 145 aa8.13□□□□□ -1.11
RTN3-209ENST00000538995 AQP10Q96PS8 301 aa8.13□□□□□ -1.11
RTN3-209ENST00000538995 Q9H3A6 140 aa8.13□□□□□ -1.11
RTN3-209ENST00000538995 ZNF492Q9P255 531 aa8.13□□□□□ -1.11
RTN3-209ENST00000538995 DNAH2Q9P225 4427 aa8.13□□□□□ -1.11
RTN3-209ENST00000538995 HERC2O95714 4834 aa8.13□□□□□ -1.11
RTN3-209ENST00000538995 GPX1P07203 203 aa8.12□□□□□ -1.11
RTN3-209ENST00000538995 ZNF138P52744 262 aa8.12□□□□□ -1.11
RTN3-209ENST00000538995 BTN1A1Q13410 526 aa8.12□□□□□ -1.11
RTN3-209ENST00000538995 EIF4E3Q8N5X7 224 aaKnown RBP8.12□□□□□ -1.11
RTN3-209ENST00000538995 ARL6IP6Q8N6S5 226 aa8.12□□□□□ -1.11
RTN3-209ENST00000538995 OR2G3Q8NGZ4 309 aa8.12□□□□□ -1.11
RTN3-209ENST00000538995 RXFP4Q8TDU9 374 aa8.12□□□□□ -1.11
RTN3-209ENST00000538995 C18orf15Q96N68 181 aa8.12□□□□□ -1.11
RTN3-209ENST00000538995 VGLL1Q99990 258 aa8.12□□□□□ -1.11
RTN3-209ENST00000538995 LENEPQ9Y5L5 61 aa8.12□□□□□ -1.11
RTN3-209ENST00000538995 FAT2Q9NYQ8 4349 aa8.12□□□□□ -1.11
RTN3-209ENST00000538995 A0A1W2PPV4 95 aa8.11□□□□□ -1.11
RTN3-209ENST00000538995 RNASE4P34096 147 aaKnown RBP8.11□□□□□ -1.11
RTN3-209ENST00000538995 RANP62826 216 aaKnown RBP8.11□□□□□ -1.11
RTN3-209ENST00000538995 CD300CQ08708 224 aa8.11□□□□□ -1.11
RTN3-209ENST00000538995 FAM74A1Q5RGS3 127 aa8.11□□□□□ -1.11
RTN3-209ENST00000538995 IBA57Q5T440 356 aaKnown RBP8.11□□□□□ -1.11
RTN3-209ENST00000538995 C11orf72Q8NBR9 251 aa8.11□□□□□ -1.11
RTN3-209ENST00000538995 TMED6Q8WW62 240 aa8.11□□□□□ -1.11
RTN3-209ENST00000538995 PSMG3Q9BT73 122 aaPredicted RBP8.11□□□□□ -1.11
RTN3-209ENST00000538995 OTORQ9NRC9 128 aa8.11□□□□□ -1.11
RTN3-209ENST00000538995 DNAH17Q9UFH2 4485 aa8.1□□□□□ -1.11
RTN3-209ENST00000538995 H3BNG1 76 aa8.1□□□□□ -1.11
RTN3-209ENST00000538995 TCL1AP56279 114 aa8.1□□□□□ -1.11
RTN3-209ENST00000538995 RAB2AP61019 212 aa8.1□□□□□ -1.11
RTN3-209ENST00000538995 Q6ZR54 194 aa8.1□□□□□ -1.11
RTN3-209ENST00000538995 OR10G4Q8NGN3 311 aa8.1□□□□□ -1.11
RTN3-209ENST00000538995 OR10G9Q8NGN4 311 aa8.1□□□□□ -1.11
RTN3-209ENST00000538995 OR10G7Q8NGN6 311 aa8.1□□□□□ -1.11
RTN3-209ENST00000538995 ATG101Q9BSB4 218 aa8.1□□□□□ -1.11
RTN3-209ENST00000538995 IGHV1OR15-1A0A075B7D0 117 aa8.09□□□□□ -1.11
RTN3-209ENST00000538995 GAGE12BA1L429 117 aa8.09□□□□□ -1.11
RTN3-209ENST00000538995 DIRC3C9JPN6 131 aa8.09□□□□□ -1.11
RTN3-209ENST00000538995 RGS13O14921 159 aa8.09□□□□□ -1.11
RTN3-209ENST00000538995 GAGE7O76087 117 aa8.09□□□□□ -1.11
RTN3-209ENST00000538995 NUDT3O95989 172 aa8.09□□□□□ -1.11
RTN3-209ENST00000538995 MBP02144 154 aa8.09□□□□□ -1.11
RTN3-209ENST00000538995 GAGE12FP0CL80 117 aa8.09□□□□□ -1.11
RTN3-209ENST00000538995 GAGE12GP0CL81 117 aa8.09□□□□□ -1.11
RTN3-209ENST00000538995 GAGE12IP0CL82 117 aa8.09□□□□□ -1.11
RTN3-209ENST00000538995 CDC34P49427 236 aaPredicted RBP8.09□□□□□ -1.11
RTN3-209ENST00000538995 SERF2P84101 59 aa8.09□□□□□ -1.11
RTN3-209ENST00000538995 RGS21Q2M5E4 152 aa8.09□□□□□ -1.11
RTN3-209ENST00000538995 PRR9Q5T870 116 aa8.09□□□□□ -1.11
RTN3-209ENST00000538995 Q8TAT8 98 aa8.09□□□□□ -1.11
RTN3-209ENST00000538995 CMTM2Q8TAZ6 248 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms