RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 PRDX2P32119 198 aa9.71□□□□□ -0.86
USP3-203ENST00000538686 DEFB121Q5J5C9 76 aa9.71□□□□□ -0.86
USP3-203ENST00000538686 C1orf229Q6ZS94 237 aaPredicted RBP9.71□□□□□ -0.86
USP3-203ENST00000538686 KIR2DL5BQ8NHK3 375 aa9.71□□□□□ -0.86
USP3-203ENST00000538686 OBP2BQ9NPH6 170 aa9.71□□□□□ -0.86
USP3-203ENST00000538686 TEX49A0A1B0GTD5 131 aa9.7□□□□□ -0.86
USP3-203ENST00000538686 H3BTX0 84 aa9.7□□□□□ -0.86
USP3-203ENST00000538686 PMVKQ15126 192 aa9.7□□□□□ -0.86
USP3-203ENST00000538686 GAGE2AQ6NT46 116 aa9.7□□□□□ -0.86
USP3-203ENST00000538686 C1orf162Q8NEQ5 155 aaPredicted RBP9.7□□□□□ -0.86
USP3-203ENST00000538686 SCNM1Q9BWG6 230 aa9.7□□□□□ -0.86
USP3-203ENST00000538686 EDA2RQ9HAV5 297 aa9.7□□□□□ -0.86
USP3-203ENST00000538686 TRBV19A0A075B6N1 114 aa9.7□□□□□ -0.86
USP3-203ENST00000538686 A0A1W2PPC4 97 aa9.7□□□□□ -0.86
USP3-203ENST00000538686 LMO7DNF2Z398 122 aa9.7□□□□□ -0.86
USP3-203ENST00000538686 IGHV3-30P01768 117 aa9.7□□□□□ -0.86
USP3-203ENST00000538686 IGHV3-30-5P0DP03 117 aa9.7□□□□□ -0.86
USP3-203ENST00000538686 HERVK_113P61574 105 aa9.7□□□□□ -0.86
USP3-203ENST00000538686 IGFBPL1Q8WX77 278 aa9.7□□□□□ -0.86
USP3-203ENST00000538686 TRGV11A0A075B6L2 103 aa9.69□□□□□ -0.86
USP3-203ENST00000538686 A0A0B4J2C4 111 aa9.69□□□□□ -0.86
USP3-203ENST00000538686 A0A0J9YY99 117 aa9.69□□□□□ -0.86
USP3-203ENST00000538686 MRPS12O15235 138 aaKnown RBP9.69□□□□□ -0.86
USP3-203ENST00000538686 CD40P25942 277 aa9.69□□□□□ -0.86
USP3-203ENST00000538686 HOXA4Q00056 320 aaPredicted RBP9.69□□□□□ -0.86
USP3-203ENST00000538686 CFHR1Q03591 330 aa9.69□□□□□ -0.86
USP3-203ENST00000538686 MZT1Q08AG7 82 aa9.69□□□□□ -0.86
USP3-203ENST00000538686 PCOLCEQ15113 449 aa9.69□□□□□ -0.86
USP3-203ENST00000538686 PAPPA-AS1Q5QFB9 102 aa9.69□□□□□ -0.86
USP3-203ENST00000538686 C6orf15Q6UXA7 325 aaPredicted RBP9.69□□□□□ -0.86
USP3-203ENST00000538686 ZNF826PQ6ZT77 177 aa9.69□□□□□ -0.86
USP3-203ENST00000538686 CD177Q8N6Q3 437 aa9.69□□□□□ -0.86
USP3-203ENST00000538686 PRR25Q96S07 402 aa9.69□□□□□ -0.86
USP3-203ENST00000538686 KNTC1P50748 2209 aa9.69□□□□□ -0.86
USP3-203ENST00000538686 RBAKDNA6NC62 111 aa9.68□□□□□ -0.86
USP3-203ENST00000538686 COX7CP15954 63 aa9.68□□□□□ -0.86
USP3-203ENST00000538686 CRIP2P52943 208 aaPredicted RBP9.68□□□□□ -0.86
USP3-203ENST00000538686 DEFB133Q30KQ1 61 aa9.68□□□□□ -0.86
USP3-203ENST00000538686 TRPT1Q86TN4 253 aaKnown RBP9.68□□□□□ -0.86
USP3-203ENST00000538686 VKORC1Q9BQB6 163 aa9.68□□□□□ -0.86
USP3-203ENST00000538686 SCRG1O75711 98 aa9.68□□□□□ -0.86
USP3-203ENST00000538686 IGHV3-13P01766 116 aa9.68□□□□□ -0.86
USP3-203ENST00000538686 TMEM258P61165 79 aa9.68□□□□□ -0.86
USP3-203ENST00000538686 WT1-ASQ06250 92 aa9.68□□□□□ -0.86
USP3-203ENST00000538686 PVRIGQ6DKI7 326 aa9.68□□□□□ -0.86
USP3-203ENST00000538686 SIGLEC15Q6ZMC9 328 aa9.68□□□□□ -0.86
USP3-203ENST00000538686 DTX2Q86UW9 622 aa9.68□□□□□ -0.86
USP3-203ENST00000538686 MDP1Q86V88 176 aa9.68□□□□□ -0.86
USP3-203ENST00000538686 SLC25A29Q8N8R3 303 aa9.68□□□□□ -0.86
USP3-203ENST00000538686 NEXN-AS1Q8NBZ9 246 aa9.68□□□□□ -0.86
USP3-203ENST00000538686 TMEM167AQ8TBQ9 72 aa9.68□□□□□ -0.86
USP3-203ENST00000538686 PLEKHB2Q96CS7 222 aa9.68□□□□□ -0.86
USP3-203ENST00000538686 DUX3Q96PT4 197 aa9.68□□□□□ -0.86
USP3-203ENST00000538686 IGFLR1Q9H665 355 aa9.68□□□□□ -0.86
USP3-203ENST00000538686 IGHV3-64DA0A0J9YX35 117 aa9.67□□□□□ -0.86
USP3-203ENST00000538686 IGLV3-19P01714 112 aa9.67□□□□□ -0.86
USP3-203ENST00000538686 IGHV3-33P01772 117 aa9.67□□□□□ -0.86
USP3-203ENST00000538686 IGKV1-16P04430 117 aa9.67□□□□□ -0.86
USP3-203ENST00000538686 EFNA4P52798 201 aa9.67□□□□□ -0.86
USP3-203ENST00000538686 ORMDL2Q53FV1 153 aa9.67□□□□□ -0.86
USP3-203ENST00000538686 MRPL36Q9P0J6 103 aaKnown RBP9.67□□□□□ -0.86
USP3-203ENST00000538686 K7ESF4 209 aa9.67□□□□□ -0.86
USP3-203ENST00000538686 CGB3P0DN86 165 aa9.67□□□□□ -0.86
USP3-203ENST00000538686 CGB7P0DN87 165 aa9.67□□□□□ -0.86
USP3-203ENST00000538686 C2orf82Q6UX34 121 aa9.67□□□□□ -0.86
USP3-203ENST00000538686 Q71RC1 249 aaPredicted RBP9.67□□□□□ -0.86
USP3-203ENST00000538686 CXorf67Q86X51 503 aaPredicted RBP9.67□□□□□ -0.86
USP3-203ENST00000538686 C8orf49Q96NF6 230 aa9.67□□□□□ -0.86
USP3-203ENST00000538686 ASCL2Q99929 193 aa9.67□□□□□ -0.86
USP3-203ENST00000538686 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.66□□□□□ -0.86
USP3-203ENST00000538686 ORM1P02763 201 aa9.66□□□□□ -0.86
USP3-203ENST00000538686 CXCL5P42830 114 aa9.66□□□□□ -0.86
USP3-203ENST00000538686 PDE6HQ13956 83 aa9.66□□□□□ -0.86
USP3-203ENST00000538686 TFF1P04155 84 aa9.65□□□□□ -0.86
USP3-203ENST00000538686 CRYGDP07320 174 aa9.65□□□□□ -0.86
USP3-203ENST00000538686 DLX6P56179 175 aa9.65□□□□□ -0.86
USP3-203ENST00000538686 SCGB3A1Q96QR1 104 aa9.65□□□□□ -0.86
USP3-203ENST00000538686 ZNF256Q9Y2P7 627 aaPredicted RBP9.65□□□□□ -0.86
USP3-203ENST00000538686 USP34Q70CQ2 3546 aa9.65□□□□□ -0.86
USP3-203ENST00000538686 TRBV30A0A0K0K1B3 111 aa9.65□□□□□ -0.87
USP3-203ENST00000538686 C17orf58Q2M2W7 97 aa9.65□□□□□ -0.87
USP3-203ENST00000538686 TOMM6Q96B49 74 aa9.65□□□□□ -0.87
USP3-203ENST00000538686 IMMP1LQ96LU5 166 aa9.65□□□□□ -0.87
USP3-203ENST00000538686 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.64□□□□□ -0.87
USP3-203ENST00000538686 TRACP01848 142 aa9.64□□□□□ -0.87
USP3-203ENST00000538686 LYZP61626 148 aa9.64□□□□□ -0.87
USP3-203ENST00000538686 IL17RELQ6ZVW7 336 aa9.64□□□□□ -0.87
USP3-203ENST00000538686 LINC00643Q86TS7 51 aa9.64□□□□□ -0.87
USP3-203ENST00000538686 TRAV17A0A0B4J275 112 aa9.63□□□□□ -0.87
USP3-203ENST00000538686 IGHV3-48P01763 117 aa9.63□□□□□ -0.87
USP3-203ENST00000538686 EGR2P11161 476 aaPredicted RBP9.63□□□□□ -0.87
USP3-203ENST00000538686 TMEM263Q8WUH6 116 aaKnown RBP9.63□□□□□ -0.87
USP3-203ENST00000538686 LINC00527Q9UJ94 153 aa9.63□□□□□ -0.87
USP3-203ENST00000538686 CNTRLQ7Z7A1 2325 aa9.63□□□□□ -0.87
USP3-203ENST00000538686 ASCC3Q8N3C0 2202 aaKnown RBP9.63□□□□□ -0.87
USP3-203ENST00000538686 OVOL1O14753 267 aa9.63□□□□□ -0.87
USP3-203ENST00000538686 TMEM240Q5SV17 173 aa9.63□□□□□ -0.87
USP3-203ENST00000538686 MRPL14Q6P1L8 145 aaKnown RBP9.63□□□□□ -0.87
USP3-203ENST00000538686 NRACQ8N912 160 aa9.63□□□□□ -0.87
USP3-203ENST00000538686 LEAP2Q969E1 77 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms