RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 KLLNB2CW77 178 aa9.26□□□□□ -0.93
VPS28-216ENST00000533806 C11orf94C9JXX5 98 aa9.26□□□□□ -0.93
VPS28-216ENST00000533806 HMGB3O15347 200 aaKnown RBP9.26□□□□□ -0.93
VPS28-216ENST00000533806 IGKV2D-40P01614 121 aaPredicted RBP9.26□□□□□ -0.93
VPS28-216ENST00000533806 SPART-AS1P0CW21 52 aa9.26□□□□□ -0.93
VPS28-216ENST00000533806 CRISP2P16562 243 aa9.26□□□□□ -0.93
VPS28-216ENST00000533806 CDC34P49427 236 aaPredicted RBP9.26□□□□□ -0.93
VPS28-216ENST00000533806 TAS2R60P59551 318 aa9.26□□□□□ -0.93
VPS28-216ENST00000533806 SSX7Q7RTT5 188 aa9.26□□□□□ -0.93
VPS28-216ENST00000533806 TMEM208Q9BTX3 173 aa9.26□□□□□ -0.93
VPS28-216ENST00000533806 ZNF324O75467 553 aaPredicted RBP9.25□□□□□ -0.93
VPS28-216ENST00000533806 SLC25A5P05141 298 aaKnown RBP9.25□□□□□ -0.93
VPS28-216ENST00000533806 NMBP08949 121 aa9.25□□□□□ -0.93
VPS28-216ENST00000533806 ARL14EPLP0DKL9 152 aa9.25□□□□□ -0.93
VPS28-216ENST00000533806 LEPP41159 167 aa9.25□□□□□ -0.93
VPS28-216ENST00000533806 ZNF726P1Q15940 193 aa9.25□□□□□ -0.93
VPS28-216ENST00000533806 FAM222AQ5U5X8 452 aa9.25□□□□□ -0.93
VPS28-216ENST00000533806 ZFAND2AQ8N6M9 145 aa9.25□□□□□ -0.93
VPS28-216ENST00000533806 ARL6IP6Q8N6S5 226 aa9.25□□□□□ -0.93
VPS28-216ENST00000533806 OTORQ9NRC9 128 aa9.25□□□□□ -0.93
VPS28-216ENST00000533806 ZNF492Q9P255 531 aa9.25□□□□□ -0.93
VPS28-216ENST00000533806 KLK5Q9Y337 293 aaPredicted RBP9.25□□□□□ -0.93
VPS28-216ENST00000533806 YTHDF2Q9Y5A9 579 aaKnown RBP9.25□□□□□ -0.93
VPS28-216ENST00000533806 VPS13DQ5THJ4 4388 aa9.24□□□□□ -0.93
VPS28-216ENST00000533806 TRBV7-9A0A0J9YWB2 115 aa9.24□□□□□ -0.93
VPS28-216ENST00000533806 DIRC3C9JPN6 131 aa9.24□□□□□ -0.93
VPS28-216ENST00000533806 H7BYZ3 331 aa9.24□□□□□ -0.93
VPS28-216ENST00000533806 EMP1P54849 157 aa9.24□□□□□ -0.93
VPS28-216ENST00000533806 RNASE8Q8TDE3 154 aaKnown RBP9.24□□□□□ -0.93
VPS28-216ENST00000533806 RXFP4Q8TDU9 374 aa9.24□□□□□ -0.93
VPS28-216ENST00000533806 LINC01587Q99440 93 aa9.24□□□□□ -0.93
VPS28-216ENST00000533806 ACTR3CQ9C0K3 210 aaPredicted RBP9.24□□□□□ -0.93
VPS28-216ENST00000533806 TRAV10A0A0B4J240 114 aa9.23□□□□□ -0.93
VPS28-216ENST00000533806 TEX48A0A1B0GUV7 120 aa9.23□□□□□ -0.93
VPS28-216ENST00000533806 PGPA6NDG6 321 aa9.23□□□□□ -0.93
VPS28-216ENST00000533806 GCHFRP30047 84 aa9.23□□□□□ -0.93
VPS28-216ENST00000533806 ZNF138P52744 262 aa9.23□□□□□ -0.93
VPS28-216ENST00000533806 CD300CQ08708 224 aa9.23□□□□□ -0.93
VPS28-216ENST00000533806 TMEM78Q5T7P6 136 aa9.23□□□□□ -0.93
VPS28-216ENST00000533806 PRR9Q5T870 116 aa9.23□□□□□ -0.93
VPS28-216ENST00000533806 ZNF767PQ75MW2 155 aa9.23□□□□□ -0.93
VPS28-216ENST00000533806 C2CD4CQ8TF44 421 aa9.23□□□□□ -0.93
VPS28-216ENST00000533806 ARPC5LQ9BPX5 153 aa9.23□□□□□ -0.93
VPS28-216ENST00000533806 LINC00467Q9BRT7 94 aa9.23□□□□□ -0.93
VPS28-216ENST00000533806 PLA2G2EQ9NZK7 142 aa9.23□□□□□ -0.93
VPS28-216ENST00000533806 TRAV12-3A0A0B4J271 114 aa9.22□□□□□ -0.93
VPS28-216ENST00000533806 A0A0D9SG52 128 aa9.22□□□□□ -0.93
VPS28-216ENST00000533806 C7orf71A4D174 169 aa9.22□□□□□ -0.93
VPS28-216ENST00000533806 LYRM9A8MSI8 78 aa9.22□□□□□ -0.93
VPS28-216ENST00000533806 CXorf1O96002 111 aa9.22□□□□□ -0.93
VPS28-216ENST00000533806 CSN1S1P47710 185 aa9.22□□□□□ -0.93
VPS28-216ENST00000533806 ZNF493Q6ZR52 646 aa9.22□□□□□ -0.93
VPS28-216ENST00000533806 TCTE3Q8IZS6 198 aa9.22□□□□□ -0.93
VPS28-216ENST00000533806 TMED6Q8WW62 240 aa9.22□□□□□ -0.93
VPS28-216ENST00000533806 LINC00476Q8WZB0 136 aa9.22□□□□□ -0.93
VPS28-216ENST00000533806 NIPSNAP3BQ9BS92 247 aa9.22□□□□□ -0.93
VPS28-216ENST00000533806 APLNQ9ULZ1 77 aa9.22□□□□□ -0.93
VPS28-216ENST00000533806 DEFB131BA0A096LNP1 70 aa9.21□□□□□ -0.94
VPS28-216ENST00000533806 CTXND1A0A1B0GTU2 59 aa9.21□□□□□ -0.94
VPS28-216ENST00000533806 J3KRW8 73 aa9.21□□□□□ -0.94
VPS28-216ENST00000533806 TCTAP57738 103 aa9.21□□□□□ -0.94
VPS28-216ENST00000533806 BTN1A1Q13410 526 aa9.21□□□□□ -0.94
VPS28-216ENST00000533806 Q6ZQT7 251 aa9.21□□□□□ -0.94
VPS28-216ENST00000533806 Q8TAT8 98 aa9.21□□□□□ -0.94
VPS28-216ENST00000533806 TMEM263Q8WUH6 116 aaKnown RBP9.21□□□□□ -0.94
VPS28-216ENST00000533806 C16orf74Q96GX8 76 aa9.21□□□□□ -0.94
VPS28-216ENST00000533806 HYLS1Q96M11 299 aa9.21□□□□□ -0.94
VPS28-216ENST00000533806 PYGO2Q9BRQ0 406 aa9.21□□□□□ -0.94
VPS28-216ENST00000533806 LENEPQ9Y5L5 61 aa9.21□□□□□ -0.94
VPS28-216ENST00000533806 GGTLC3B5MD39 225 aa9.2□□□□□ -0.94
VPS28-216ENST00000533806 BCL2L11O43521 198 aa9.2□□□□□ -0.94
VPS28-216ENST00000533806 SEC11BP0C7V7 166 aa9.2□□□□□ -0.94
VPS28-216ENST00000533806 RNASE4P34096 147 aaKnown RBP9.2□□□□□ -0.94
VPS28-216ENST00000533806 FAM74A1Q5RGS3 127 aa9.2□□□□□ -0.94
VPS28-216ENST00000533806 TMEM167BQ9NRX6 74 aa9.2□□□□□ -0.94
VPS28-216ENST00000533806 KMT2AQ03164 3969 aa9.2□□□□□ -0.94
VPS28-216ENST00000533806 A0A1W2PRE2 83 aa9.19□□□□□ -0.94
VPS28-216ENST00000533806 IGLL5B9A064 214 aa9.19□□□□□ -0.94
VPS28-216ENST00000533806 GPX1P07203 203 aa9.19□□□□□ -0.94
VPS28-216ENST00000533806 HTN1P15515 57 aa9.19□□□□□ -0.94
VPS28-216ENST00000533806 FHITP49789 147 aa9.19□□□□□ -0.94
VPS28-216ENST00000533806 GNG5P63218 68 aa9.19□□□□□ -0.94
VPS28-216ENST00000533806 ANXA2RQ3ZCQ2 193 aa9.19□□□□□ -0.94
VPS28-216ENST00000533806 LGALSLQ3ZCW2 172 aaPredicted RBP9.19□□□□□ -0.94
VPS28-216ENST00000533806 AKR1C8PQ5T2L2 129 aa9.19□□□□□ -0.94
VPS28-216ENST00000533806 GOLT1AQ6ZVE7 132 aa9.19□□□□□ -0.94
VPS28-216ENST00000533806 TMUB2Q71RG4 321 aa9.19□□□□□ -0.94
VPS28-216ENST00000533806 LINC00612Q8N6U2 182 aa9.19□□□□□ -0.94
VPS28-216ENST00000533806 C11orf72Q8NBR9 251 aa9.19□□□□□ -0.94
VPS28-216ENST00000533806 CMTM2Q8TAZ6 248 aa9.19□□□□□ -0.94
VPS28-216ENST00000533806 TVP23CQ96ET8 276 aa9.19□□□□□ -0.94
VPS28-216ENST00000533806 TMPRSS5Q9H3S3 457 aa9.19□□□□□ -0.94
VPS28-216ENST00000533806 TIMM8BQ9Y5J9 83 aaPredicted RBP9.19□□□□□ -0.94
VPS28-216ENST00000533806 IGHV4-4A0A075B6R2 117 aa9.18□□□□□ -0.94
VPS28-216ENST00000533806 IGLV2-11P01706 119 aa9.18□□□□□ -0.94
VPS28-216ENST00000533806 TCRAP04437 139 aa9.18□□□□□ -0.94
VPS28-216ENST00000533806 SUMO1P63165 101 aaKnown RBP9.18□□□□□ -0.94
VPS28-216ENST00000533806 LGALS9CQ6DKI2 356 aa9.18□□□□□ -0.94
VPS28-216ENST00000533806 C5orf17Q8NAS9 161 aa9.18□□□□□ -0.94
VPS28-216ENST00000533806 EPDR1Q9UM22 224 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms