RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 PHBP35232 272 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 EFNA4P52798 201 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 TAS2R45P59539 299 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 FGF12P61328 243 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 RHOBP62745 196 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 TNFAIP6P98066 277 aaPredicted RBP1.21□□□□□ -2.22
CD44-233ENST00000531141 SMCO1Q147U7 214 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 SCGB2B2Q4G0G5 96 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 MRPL51Q4U2R6 128 aaKnown RBP1.21□□□□□ -2.22
CD44-233ENST00000531141 AKR1C8PQ5T2L2 129 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 IBA57Q5T440 356 aaKnown RBP1.21□□□□□ -2.22
CD44-233ENST00000531141 GLT8D1Q68CQ7 371 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 DCUN1D2Q6PH85 259 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 RPS19BP1Q86WX3 136 aaKnown RBP1.21□□□□□ -2.22
CD44-233ENST00000531141 BAP18Q8IXM2 172 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 SLC22A24Q8N4F4 322 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 SMIM20Q8N5G0 67 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 SIGLECL1Q8N7X8 197 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 OR4E2Q8NGC2 313 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 OR2T27Q8NH04 317 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 GNPNAT1Q96EK6 184 aaPredicted RBP1.21□□□□□ -2.22
CD44-233ENST00000531141 COX14Q96I36 57 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 OR52B2Q96RD2 323 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 TBX5Q99593 518 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 Q9BRP9 147 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 RNF122Q9H9V4 155 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 GPR84Q9NQS5 396 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 ACER3Q9NUN7 267 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 C14orf105Q9NVL8 296 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 FAIMQ9NVQ4 179 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 PRNDQ9UKY0 176 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 PKIGQ9Y2B9 76 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 SLC35A3Q9Y2D2 325 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 KLK5Q9Y337 293 aaPredicted RBP1.21□□□□□ -2.22
CD44-233ENST00000531141 MRPS16Q9Y3D3 137 aaKnown RBP1.21□□□□□ -2.22
CD44-233ENST00000531141 TMEM56-RWDD3S4R434 201 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 FAM236DA0A1B0GTK5 79 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 TMEM269A0A1B0GVZ9 245 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 TRAPPC13A5PLN9 417 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 MAP1LC3B2A6NCE7 125 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 PRORSD1PA6NEY8 169 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 EFCAB10A6NFE3 127 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 INMT-MINDY4F8WBC2 141 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 G3V2T6 193 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 H7C1C5 153 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 J3QRK9 145 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 M0QZK8 103 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 KPNA4O00629 521 aaPredicted RBP1.2□□□□□ -2.22
CD44-233ENST00000531141 NDUFC2O95298 119 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 CRYZL1O95825 349 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 LY6G6CO95867 125 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 APOA2P02652 100 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 PPBPP02775 128 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 FAM236CP0DP71 79 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 GZMBP10144 247 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 PPIBP23284 216 aaKnown RBP1.2□□□□□ -2.22
CD44-233ENST00000531141 S100GP29377 79 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 ERP29P30040 261 aaKnown RBP1.2□□□□□ -2.22
CD44-233ENST00000531141 ALDH3A1P30838 453 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 G6PCP35575 357 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 CD200P41217 278 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 LINC00313P59037 77 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 CDC42P60953 191 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 LCN6P62502 163 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 RUNX1Q01196 453 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 GRK1Q15835 563 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 C12orf74Q32Q52 190 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 TMEM78Q5T7P6 136 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 Q6ZS49 121 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 SLC35F6Q8N357 371 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 ANKRD29Q8N6D5 301 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 OR13C8Q8NGS7 320 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 OR10K1Q8NGX5 313 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 OR10J5Q8NHC4 309 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 MRPL30Q8TCC3 161 aaKnown RBP1.2□□□□□ -2.22
CD44-233ENST00000531141 C11orf40Q8WZ69 217 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 C12orf43Q96C57 262 aaKnown RBP1.2□□□□□ -2.22
CD44-233ENST00000531141 MALSU1Q96EH3 234 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 NMNAT3Q96T66 252 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 MGLLQ99685 303 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 UPK3BQ9BT76 320 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 PBDC1Q9BVG4 233 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 TMEM147Q9BVK8 224 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 MAP1LC3BQ9GZQ8 125 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 CCDC90BQ9GZT6 254 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 CHST6Q9GZX3 395 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 PBOV1Q9GZY1 135 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 CBLN4Q9NTU7 201 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 NDUFB11Q9NX14 153 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 SSR3Q9UNL2 185 aa1.2□□□□□ -2.22
CD44-233ENST00000531141 UTP11Q9Y3A2 253 aaKnown RBP1.2□□□□□ -2.22
CD44-233ENST00000531141 DYNC1H1Q14204 4646 aaKnown RBP1.2□□□□□ -2.22
CD44-233ENST00000531141 HSPG2P98160 4391 aa1.19□□□□□ -2.22
CD44-233ENST00000531141 DOCK11Q5JSL3 2073 aa1.19□□□□□ -2.22
CD44-233ENST00000531141 HUWE1Q7Z6Z7 4374 aaKnown RBP1.19□□□□□ -2.22
CD44-233ENST00000531141 TRBV19A0A075B6N1 114 aa1.19□□□□□ -2.22
CD44-233ENST00000531141 hCG_1818297A0A087WSY0 165 aa1.19□□□□□ -2.22
CD44-233ENST00000531141 SIGLEC16A6NMB1 481 aa1.19□□□□□ -2.22
CD44-233ENST00000531141 A8MT66 165 aa1.19□□□□□ -2.22
CD44-233ENST00000531141 SLC17A3O00476 420 aa1.19□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms