RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 FAM201AQ5SY85 155 aa11.08□□□□□ -0.64
PCF11-204ENST00000530660 RASL10AQ92737 203 aa11.08□□□□□ -0.64
PCF11-204ENST00000530660 EFNA4P52798 201 aa11.07□□□□□ -0.64
PCF11-204ENST00000530660 SRSF9Q13242 221 aaKnown RBP eCLIP11.07□□□□□ -0.644e-6■■□□□ 11.4
PCF11-204ENST00000530660 RNF185Q96GF1 192 aa11.07□□□□□ -0.64
PCF11-204ENST00000530660 SMG1Q96Q15 3661 aaKnown RBP11.07□□□□□ -0.64
PCF11-204ENST00000530660 AAMDCQ9H7C9 122 aa11.07□□□□□ -0.64
PCF11-204ENST00000530660 SPENQ96T58 3664 aaKnown RBP11.07□□□□□ -0.64
PCF11-204ENST00000530660 UBE2D1P51668 147 aa11.07□□□□□ -0.64
PCF11-204ENST00000530660 SBSPONQ8IVN8 264 aa11.07□□□□□ -0.64
PCF11-204ENST00000530660 TMEM78Q5T7P6 136 aa11.06□□□□□ -0.64
PCF11-204ENST00000530660 PLEKHB2Q96CS7 222 aa11.06□□□□□ -0.64
PCF11-204ENST00000530660 CSDC2Q9Y534 153 aaKnown RBP11.06□□□□□ -0.64
PCF11-204ENST00000530660 ASPMQ8IZT6 3477 aa11.06□□□□□ -0.64
PCF11-204ENST00000530660 SH2D1AO60880 128 aa11.06□□□□□ -0.64
PCF11-204ENST00000530660 SCGB1C2P0DMR2 95 aa11.06□□□□□ -0.64
PCF11-204ENST00000530660 IGHV1-2P23083 117 aa11.06□□□□□ -0.64
PCF11-204ENST00000530660 OR11H6Q8NGC7 330 aa11.06□□□□□ -0.64
PCF11-204ENST00000530660 MGAQ8IWI9 3026 aa11.06□□□□□ -0.64
PCF11-204ENST00000530660 C9JAW5 83 aa11.06□□□□□ -0.64
PCF11-204ENST00000530660 CGB3P0DN86 165 aa11.06□□□□□ -0.64
PCF11-204ENST00000530660 CGB7P0DN87 165 aa11.06□□□□□ -0.64
PCF11-204ENST00000530660 TMEM75Q8N9X5 138 aa11.06□□□□□ -0.64
PCF11-204ENST00000530660 DEFB127Q9H1M4 99 aa11.06□□□□□ -0.64
PCF11-204ENST00000530660 HIGD1AQ9Y241 93 aa11.06□□□□□ -0.64
PCF11-204ENST00000530660 SPRNQ5BIV9 151 aa11.05□□□□□ -0.64
PCF11-204ENST00000530660 SCGB1D4Q6XE38 83 aa11.05□□□□□ -0.64
PCF11-204ENST00000530660 CHCHD5Q9BSY4 110 aa11.05□□□□□ -0.64
PCF11-204ENST00000530660 MRPL20Q9BYC9 149 aaKnown RBP11.05□□□□□ -0.64
PCF11-204ENST00000530660 SLC25A20O43772 301 aa11.05□□□□□ -0.64
PCF11-204ENST00000530660 SUB1P53999 127 aaKnown RBP eCLIP11.05□□□□□ -0.64
PCF11-204ENST00000530660 C15orf53Q8NAA6 179 aa11.05□□□□□ -0.64
PCF11-204ENST00000530660 MYOZ3Q8TDC0 251 aa11.05□□□□□ -0.64
PCF11-204ENST00000530660 SLC25A39Q9BZJ4 359 aaPredicted RBP11.05□□□□□ -0.64
PCF11-204ENST00000530660 NXT2Q9NPJ8 142 aaKnown RBP11.05□□□□□ -0.64
PCF11-204ENST00000530660 LOC107984640A0A0U1RRK4 108 aa11.04□□□□□ -0.64
PCF11-204ENST00000530660 TRPT1Q86TN4 253 aaKnown RBP11.04□□□□□ -0.64
PCF11-204ENST00000530660 CD7P09564 240 aa11.04□□□□□ -0.64
PCF11-204ENST00000530660 EGR2P11161 476 aaPredicted RBP11.04□□□□□ -0.64
PCF11-204ENST00000530660 ODF3Q96PU9 254 aa11.04□□□□□ -0.64
PCF11-204ENST00000530660 TPSG1Q9NRR2 321 aa11.04□□□□□ -0.64
PCF11-204ENST00000530660 ONECUT1Q9UBC0 465 aa11.04□□□□□ -0.64
PCF11-204ENST00000530660 A0A1W2PPI3 338 aa11.04□□□□□ -0.64
PCF11-204ENST00000530660 ASIPP42127 132 aa11.04□□□□□ -0.64
PCF11-204ENST00000530660 NDUFA11Q86Y39 141 aa11.04□□□□□ -0.64
PCF11-204ENST00000530660 VKORC1Q9BQB6 163 aa11.04□□□□□ -0.64
PCF11-204ENST00000530660 NTN5Q8WTR8 489 aaPredicted RBP11.03□□□□□ -0.64
PCF11-204ENST00000530660 ZNF815PA8K554 130 aa11.03□□□□□ -0.64
PCF11-204ENST00000530660 NTN3O00634 580 aaPredicted RBP11.03□□□□□ -0.64
PCF11-204ENST00000530660 CFIP05156 583 aa11.03□□□□□ -0.64
PCF11-204ENST00000530660 C6orf15Q6UXA7 325 aaPredicted RBP11.03□□□□□ -0.64
PCF11-204ENST00000530660 KLK15Q9H2R5 256 aa11.03□□□□□ -0.64
PCF11-204ENST00000530660 LINC01546A6NGU7 62 aa11.02□□□□□ -0.64
PCF11-204ENST00000530660 LINC00694P0DN24 101 aa11.02□□□□□ -0.64
PCF11-204ENST00000530660 PF4V1P10720 104 aa11.02□□□□□ -0.64
PCF11-204ENST00000530660 KLHL30-AS1Q8NEE0 82 aa11.02□□□□□ -0.64
PCF11-204ENST00000530660 TRBV19A0A075B6N1 114 aa11.02□□□□□ -0.65
PCF11-204ENST00000530660 LINC01619G3V211 115 aa11.02□□□□□ -0.65
PCF11-204ENST00000530660 K7ESF4 209 aa11.02□□□□□ -0.65
PCF11-204ENST00000530660 PLNP26678 52 aa11.02□□□□□ -0.65
PCF11-204ENST00000530660 SIGLEC15Q6ZMC9 328 aa11.02□□□□□ -0.65
PCF11-204ENST00000530660 Q8N1Y9 231 aa11.02□□□□□ -0.65
PCF11-204ENST00000530660 TMEM155Q4W5P6 130 aa11.02□□□□□ -0.65
PCF11-204ENST00000530660 LYRM7Q5U5X0 104 aa11.02□□□□□ -0.65
PCF11-204ENST00000530660 TRBV6-1A0A0K0K1D8 114 aa11.01□□□□□ -0.65
PCF11-204ENST00000530660 TEX49A0A1B0GTD5 131 aa11.01□□□□□ -0.65
PCF11-204ENST00000530660 NRGNQ92686 78 aa11.01□□□□□ -0.65
PCF11-204ENST00000530660 PRADC1Q9BSG0 188 aa11.01□□□□□ -0.65
PCF11-204ENST00000530660 C21orf62Q9NYP8 219 aa11.01□□□□□ -0.65
PCF11-204ENST00000530660 MDFICQ9P1T7 246 aa11.01□□□□□ -0.65
PCF11-204ENST00000530660 SRRM5B3KS81 715 aa11.01□□□□□ -0.65
PCF11-204ENST00000530660 OR10J6PQ8NGY7 276 aa11.01□□□□□ -0.65
PCF11-204ENST00000530660 LINC01587Q99440 93 aa11.01□□□□□ -0.65
PCF11-204ENST00000530660 MED13Q9UHV7 2174 aa11.01□□□□□ -0.65
PCF11-204ENST00000530660 ZZEF1O43149 2961 aa11.01□□□□□ -0.65
PCF11-204ENST00000530660 TRAV26-2A0A0B4J265 109 aa11.01□□□□□ -0.65
PCF11-204ENST00000530660 MRPL23Q16540 153 aaKnown RBP11.01□□□□□ -0.65
PCF11-204ENST00000530660 Q6Q795 121 aa11.01□□□□□ -0.65
PCF11-204ENST00000530660 IGLV2-18A0A075B6J9 118 aa11□□□□□ -0.65
PCF11-204ENST00000530660 CXCL12P48061 93 aa11□□□□□ -0.65
PCF11-204ENST00000530660 ZNF80P51504 273 aaPredicted RBP11□□□□□ -0.65
PCF11-204ENST00000530660 DEFB108BQ8NET1 73 aa11□□□□□ -0.65
PCF11-204ENST00000530660 Q8TAT8 98 aa11□□□□□ -0.65
PCF11-204ENST00000530660 SPRR3Q9UBC9 169 aa11□□□□□ -0.65
PCF11-204ENST00000530660 CSMD1Q96PZ7 3565 aa11□□□□□ -0.65
PCF11-204ENST00000530660 PATE3B3GLJ2 98 aa11□□□□□ -0.65
PCF11-204ENST00000530660 SLC25A16P16260 332 aa11□□□□□ -0.65
PCF11-204ENST00000530660 GLRXP35754 106 aa11□□□□□ -0.65
PCF11-204ENST00000530660 C5orf47Q569G3 176 aa11□□□□□ -0.65
PCF11-204ENST00000530660 Q8N8P6 123 aa11□□□□□ -0.65
PCF11-204ENST00000530660 NGBQ9NPG2 151 aa11□□□□□ -0.65
PCF11-204ENST00000530660 F8VRH5 84 aa10.99□□□□□ -0.65
PCF11-204ENST00000530660 PRR30Q53SZ7 412 aaPredicted RBP10.99□□□□□ -0.65
PCF11-204ENST00000530660 ZNF575Q86XF7 245 aa10.99□□□□□ -0.65
PCF11-204ENST00000530660 IGKV2-40A0A087WW87 121 aaPredicted RBP10.99□□□□□ -0.65
PCF11-204ENST00000530660 IGKV2D-40P01614 121 aaPredicted RBP10.99□□□□□ -0.65
PCF11-204ENST00000530660 CFC1BP0CG36 223 aa10.99□□□□□ -0.65
PCF11-204ENST00000530660 CFC1P0CG37 223 aa10.99□□□□□ -0.65
PCF11-204ENST00000530660 FAM57AQ8TBR7 257 aa10.99□□□□□ -0.65
PCF11-204ENST00000530660 H7C2G1 150 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms