RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 FHITP49789 147 aa7.36□□□□□ -1.23
VPS28-204ENST00000526054 FXYD7P58549 80 aa7.36□□□□□ -1.23
VPS28-204ENST00000526054 RANP62826 216 aaKnown RBP7.36□□□□□ -1.23
VPS28-204ENST00000526054 IQCF2Q8IXL9 164 aa7.36□□□□□ -1.23
VPS28-204ENST00000526054 SLC35B3Q9H1N7 401 aa7.36□□□□□ -1.23
VPS28-204ENST00000526054 Q9H3A6 140 aa7.36□□□□□ -1.23
VPS28-204ENST00000526054 TMEM167BQ9NRX6 74 aa7.36□□□□□ -1.23
VPS28-204ENST00000526054 XCL2Q9UBD3 114 aa7.36□□□□□ -1.23
VPS28-204ENST00000526054 HECTD4Q9Y4D8 3996 aa7.35□□□□□ -1.23
VPS28-204ENST00000526054 MAP1LC3B2A6NCE7 125 aa7.35□□□□□ -1.23
VPS28-204ENST00000526054 PRAC2D3DTV9 90 aa7.35□□□□□ -1.23
VPS28-204ENST00000526054 HBE1P02100 147 aa7.35□□□□□ -1.23
VPS28-204ENST00000526054 LGALS9CQ6DKI2 356 aa7.35□□□□□ -1.23
VPS28-204ENST00000526054 AMTNQ6UX39 209 aa7.35□□□□□ -1.23
VPS28-204ENST00000526054 OR11H2Q8NH07 326 aa7.35□□□□□ -1.23
VPS28-204ENST00000526054 C11orf45Q8TAV5 145 aa7.35□□□□□ -1.23
VPS28-204ENST00000526054 CMTM2Q8TAZ6 248 aa7.35□□□□□ -1.23
VPS28-204ENST00000526054 RXFP4Q8TDU9 374 aa7.35□□□□□ -1.23
VPS28-204ENST00000526054 PCNPQ8WW12 178 aaKnown RBP7.35□□□□□ -1.23
VPS28-204ENST00000526054 RARRES2Q99969 163 aa7.35□□□□□ -1.23
VPS28-204ENST00000526054 MAP1LC3BQ9GZQ8 125 aa7.35□□□□□ -1.23
VPS28-204ENST00000526054 C11orf68Q9H3H3 251 aaKnown RBP7.35□□□□□ -1.23
VPS28-204ENST00000526054 OTORQ9NRC9 128 aa7.35□□□□□ -1.23
VPS28-204ENST00000526054 VPS13DQ5THJ4 4388 aa7.35□□□□□ -1.23
VPS28-204ENST00000526054 DNAH6Q9C0G6 4158 aa7.35□□□□□ -1.23
VPS28-204ENST00000526054 NPIPB6E9PJ23 425 aa7.34□□□□□ -1.23
VPS28-204ENST00000526054 INSP01308 110 aa7.34□□□□□ -1.23
VPS28-204ENST00000526054 PRB4P10163 310 aaPredicted RBP7.34□□□□□ -1.23
VPS28-204ENST00000526054 TSPOP30536 169 aa7.34□□□□□ -1.23
VPS28-204ENST00000526054 NANOS2P60321 138 aaKnown RBP7.34□□□□□ -1.23
VPS28-204ENST00000526054 ZNF726P1Q15940 193 aa7.34□□□□□ -1.23
VPS28-204ENST00000526054 NDUFA5Q16718 116 aa7.34□□□□□ -1.23
VPS28-204ENST00000526054 SPINK13Q1W4C9 94 aa7.34□□□□□ -1.23
VPS28-204ENST00000526054 SSX7Q7RTT5 188 aa7.34□□□□□ -1.23
VPS28-204ENST00000526054 CSNK1G2-AS1Q8NCQ2 148 aa7.34□□□□□ -1.23
VPS28-204ENST00000526054 SFT2D1Q8WV19 159 aa7.34□□□□□ -1.23
VPS28-204ENST00000526054 MBD3L1Q8WWY6 194 aa7.34□□□□□ -1.23
VPS28-204ENST00000526054 ODF3Q96PU9 254 aa7.34□□□□□ -1.23
VPS28-204ENST00000526054 GOLT1BQ9Y3E0 138 aa7.34□□□□□ -1.23
VPS28-204ENST00000526054 TRAV1-1A0A0B4J248 108 aa7.33□□□□□ -1.24
VPS28-204ENST00000526054 PGPA6NDG6 321 aa7.33□□□□□ -1.24
VPS28-204ENST00000526054 M0R2Z0 102 aa7.33□□□□□ -1.24
VPS28-204ENST00000526054 LEPP41159 167 aa7.33□□□□□ -1.24
VPS28-204ENST00000526054 CDKN1BP46527 198 aa7.33□□□□□ -1.24
VPS28-204ENST00000526054 FGF8P55075 233 aaPredicted RBP7.33□□□□□ -1.24
VPS28-204ENST00000526054 TMEM78Q5T7P6 136 aa7.33□□□□□ -1.24
VPS28-204ENST00000526054 SUN5Q8TC36 379 aa7.33□□□□□ -1.24
VPS28-204ENST00000526054 IGF2BP2-AS1Q96M15 143 aa7.33□□□□□ -1.24
VPS28-204ENST00000526054 LINC00477Q96M19 166 aa7.33□□□□□ -1.24
VPS28-204ENST00000526054 IGKV2-40A0A087WW87 121 aaPredicted RBP7.32□□□□□ -1.24
VPS28-204ENST00000526054 A0A1B0GV50 99 aa7.32□□□□□ -1.24
VPS28-204ENST00000526054 RBAKDNA6NC62 111 aa7.32□□□□□ -1.24
VPS28-204ENST00000526054 LINC00862A6NCI5 91 aa7.32□□□□□ -1.24
VPS28-204ENST00000526054 DIRC3C9JPN6 131 aa7.32□□□□□ -1.24
VPS28-204ENST00000526054 DEFB4AO15263 64 aa7.32□□□□□ -1.24
VPS28-204ENST00000526054 IGKV2D-40P01614 121 aaPredicted RBP7.32□□□□□ -1.24
VPS28-204ENST00000526054 SLC25A5P05141 298 aaKnown RBP7.32□□□□□ -1.24
VPS28-204ENST00000526054 MIFP14174 115 aa7.32□□□□□ -1.24
VPS28-204ENST00000526054 ZNF705AQ6ZN79 300 aaPredicted RBP7.32□□□□□ -1.24
VPS28-204ENST00000526054 C9orf47Q6ZRZ4 202 aa7.32□□□□□ -1.24
VPS28-204ENST00000526054 ARL6IP6Q8N6S5 226 aa7.32□□□□□ -1.24
VPS28-204ENST00000526054 LYPD6BQ8NI32 183 aa7.32□□□□□ -1.24
VPS28-204ENST00000526054 TMEM208Q9BTX3 173 aa7.32□□□□□ -1.24
VPS28-204ENST00000526054 MED9Q9NWA0 146 aa7.32□□□□□ -1.24
VPS28-204ENST00000526054 RPH3ALQ9UNE2 315 aa7.32□□□□□ -1.24
VPS28-204ENST00000526054 TRAV12-2A0A075B6T6 113 aa7.31□□□□□ -1.24
VPS28-204ENST00000526054 IGHV3OR16-12A0A075B7B8 117 aa7.31□□□□□ -1.24
VPS28-204ENST00000526054 SERTM2A0A1B0GWG4 89 aa7.31□□□□□ -1.24
VPS28-204ENST00000526054 A0A1W2PRE2 83 aa7.31□□□□□ -1.24
VPS28-204ENST00000526054 SMIM9A6NGZ8 99 aa7.31□□□□□ -1.24
VPS28-204ENST00000526054 IFNA1P01562 189 aa7.31□□□□□ -1.24
VPS28-204ENST00000526054 CT45A10P0DMU9 189 aa7.31□□□□□ -1.24
VPS28-204ENST00000526054 ERCC8Q13216 396 aa7.31□□□□□ -1.24
VPS28-204ENST00000526054 COMMD7Q86VX2 200 aa7.31□□□□□ -1.24
VPS28-204ENST00000526054 TMEM256Q8N2U0 113 aa7.31□□□□□ -1.24
VPS28-204ENST00000526054 C5orf17Q8NAS9 161 aa7.31□□□□□ -1.24
VPS28-204ENST00000526054 C2CD4CQ8TF44 421 aa7.31□□□□□ -1.24
VPS28-204ENST00000526054 NEU1Q99519 415 aa7.31□□□□□ -1.24
VPS28-204ENST00000526054 C20orf144Q9BQM9 153 aa7.31□□□□□ -1.24
VPS28-204ENST00000526054 AGPAT4-IT1Q9H0P7 198 aa7.31□□□□□ -1.24
VPS28-204ENST00000526054 TMPRSS5Q9H3S3 457 aa7.31□□□□□ -1.24
VPS28-204ENST00000526054 X6R8D5 127 aa7.31□□□□□ -1.24
VPS28-204ENST00000526054 IGHV4-28A0A0C4DH34 117 aa7.3□□□□□ -1.24
VPS28-204ENST00000526054 TRBV7-9A0A0J9YWB2 115 aa7.3□□□□□ -1.24
VPS28-204ENST00000526054 GGTLC3B5MD39 225 aa7.3□□□□□ -1.24
VPS28-204ENST00000526054 K7EQM0 130 aa7.3□□□□□ -1.24
VPS28-204ENST00000526054 CRXO43186 299 aaPredicted RBP7.3□□□□□ -1.24
VPS28-204ENST00000526054 PPT1P50897 306 aa7.3□□□□□ -1.24
VPS28-204ENST00000526054 ZNF138P52744 262 aa7.3□□□□□ -1.24
VPS28-204ENST00000526054 TCTAP57738 103 aa7.3□□□□□ -1.24
VPS28-204ENST00000526054 UBE2G2P60604 165 aa7.3□□□□□ -1.24
VPS28-204ENST00000526054 GOLT1AQ6ZVE7 132 aa7.3□□□□□ -1.24
VPS28-204ENST00000526054 C1orf158Q8N1D5 194 aa7.3□□□□□ -1.24
VPS28-204ENST00000526054 Q8NAQ8 132 aa7.3□□□□□ -1.24
VPS28-204ENST00000526054 VGLL1Q99990 258 aa7.3□□□□□ -1.24
VPS28-204ENST00000526054 NKX6-2Q9C056 277 aaPredicted RBP7.3□□□□□ -1.24
VPS28-204ENST00000526054 ZNF492Q9P255 531 aa7.3□□□□□ -1.24
VPS28-204ENST00000526054 ARL2-SNX15V9GYD0 113 aa7.3□□□□□ -1.24
VPS28-204ENST00000526054 RAB19A4D1S5 217 aa7.29□□□□□ -1.24
VPS28-204ENST00000526054 C11orf94C9JXX5 98 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms