RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 FAM231AP0DMU4 169 aa14.79□□□□□ -0.04
VPS28-203ENST00000524521 FAM231CP0DMU5 169 aa14.79□□□□□ -0.04
VPS28-203ENST00000524521 M6PRP20645 277 aa14.79□□□□□ -0.04
VPS28-203ENST00000524521 RGS21Q2M5E4 152 aa14.79□□□□□ -0.04
VPS28-203ENST00000524521 TMEM78Q5T7P6 136 aa14.79□□□□□ -0.04
VPS28-203ENST00000524521 VGLL1Q99990 258 aa14.79□□□□□ -0.04
VPS28-203ENST00000524521 RNASE4P34096 147 aaKnown RBP14.78□□□□□ -0.04
VPS28-203ENST00000524521 CSN1S1P47710 185 aa14.78□□□□□ -0.04
VPS28-203ENST00000524521 TMEM88Q6PEY1 159 aa14.78□□□□□ -0.04
VPS28-203ENST00000524521 LYPD1Q8N2G4 141 aa14.78□□□□□ -0.04
VPS28-203ENST00000524521 FAM19A4Q96LR4 140 aa14.78□□□□□ -0.04
VPS28-203ENST00000524521 AQP10Q96PS8 301 aa14.78□□□□□ -0.04
VPS28-203ENST00000524521 Q9H3A6 140 aa14.78□□□□□ -0.04
VPS28-203ENST00000524521 C7orf71A4D174 169 aa14.77□□□□□ -0.05
VPS28-203ENST00000524521 CBY3A6NI87 242 aa14.77□□□□□ -0.05
VPS28-203ENST00000524521 GPX1P07203 203 aa14.77□□□□□ -0.05
VPS28-203ENST00000524521 RAB2AP61019 212 aa14.77□□□□□ -0.05
VPS28-203ENST00000524521 CD300CQ08708 224 aa14.77□□□□□ -0.05
VPS28-203ENST00000524521 ZNF266Q14584 549 aa14.77□□□□□ -0.05
VPS28-203ENST00000524521 HSD17B11Q8NBQ5 300 aa14.77□□□□□ -0.05
VPS28-203ENST00000524521 OR10G4Q8NGN3 311 aa14.77□□□□□ -0.05
VPS28-203ENST00000524521 OR10G9Q8NGN4 311 aa14.77□□□□□ -0.05
VPS28-203ENST00000524521 OR10G7Q8NGN6 311 aa14.77□□□□□ -0.05
VPS28-203ENST00000524521 ASB13Q8WXK3 278 aa14.77□□□□□ -0.05
VPS28-203ENST00000524521 PYGO2Q9BRQ0 406 aa14.77□□□□□ -0.05
VPS28-203ENST00000524521 KLLNB2CW77 178 aa14.76□□□□□ -0.05
VPS28-203ENST00000524521 F5H768 121 aa14.76□□□□□ -0.05
VPS28-203ENST00000524521 BTN1A1Q13410 526 aa14.76□□□□□ -0.05
VPS28-203ENST00000524521 POM121L12Q8N7R1 296 aa14.76□□□□□ -0.05
VPS28-203ENST00000524521 SNURFLB1AK76 121 aa14.75□□□□□ -0.05
VPS28-203ENST00000524521 ATP5G1P05496 136 aa14.75□□□□□ -0.05
VPS28-203ENST00000524521 CRISP2P16562 243 aa14.75□□□□□ -0.05
VPS28-203ENST00000524521 ATP5G3P48201 142 aa14.75□□□□□ -0.05
VPS28-203ENST00000524521 INO80EQ8NBZ0 244 aaPredicted RBP14.75□□□□□ -0.05
VPS28-203ENST00000524521 ZNF492Q9P255 531 aa14.75□□□□□ -0.05
VPS28-203ENST00000524521 FXYD6-FXYD2A0A087WZ82 144 aa14.74□□□□□ -0.05
VPS28-203ENST00000524521 HMGB3O15347 200 aaKnown RBP14.74□□□□□ -0.05
VPS28-203ENST00000524521 ZNF324O75467 553 aaPredicted RBP14.74□□□□□ -0.05
VPS28-203ENST00000524521 ZNF138P52744 262 aa14.74□□□□□ -0.05
VPS28-203ENST00000524521 PQLC2Q6ZP29 291 aa14.74□□□□□ -0.05
VPS28-203ENST00000524521 HYLS1Q96M11 299 aa14.74□□□□□ -0.05
VPS28-203ENST00000524521 KMT2AQ03164 3969 aa14.74□□□□□ -0.05
VPS28-203ENST00000524521 PGPA6NDG6 321 aa14.73□□□□□ -0.05
VPS28-203ENST00000524521 NMBP08949 121 aa14.73□□□□□ -0.05
VPS28-203ENST00000524521 ATP6V0CP27449 155 aa14.73□□□□□ -0.05
VPS28-203ENST00000524521 UBE2DNLQ8IWF7 75 aa14.73□□□□□ -0.05
VPS28-203ENST00000524521 ZFAND2AQ8N6M9 145 aa14.73□□□□□ -0.05
VPS28-203ENST00000524521 OR2T35Q8NGX2 323 aa14.73□□□□□ -0.05
VPS28-203ENST00000524521 RXFP4Q8TDU9 374 aa14.73□□□□□ -0.05
VPS28-203ENST00000524521 RBAKDNA6NC62 111 aa14.72□□□□□ -0.05
VPS28-203ENST00000524521 C15orf53Q8NAA6 179 aa14.72□□□□□ -0.05
VPS28-203ENST00000524521 OR2G3Q8NGZ4 309 aa14.72□□□□□ -0.05
VPS28-203ENST00000524521 Q8TAT8 98 aa14.72□□□□□ -0.05
VPS28-203ENST00000524521 PSMG3Q9BT73 122 aaPredicted RBP14.72□□□□□ -0.05
VPS28-203ENST00000524521 OTORQ9NRC9 128 aa14.72□□□□□ -0.05
VPS28-203ENST00000524521 GAGE12BA1L429 117 aa14.71□□□□□ -0.05
VPS28-203ENST00000524521 DIRC3C9JPN6 131 aa14.71□□□□□ -0.05
VPS28-203ENST00000524521 GAGE7O76087 117 aa14.71□□□□□ -0.05
VPS28-203ENST00000524521 GAGE12FP0CL80 117 aa14.71□□□□□ -0.05
VPS28-203ENST00000524521 GAGE12GP0CL81 117 aa14.71□□□□□ -0.05
VPS28-203ENST00000524521 GAGE12IP0CL82 117 aa14.71□□□□□ -0.05
VPS28-203ENST00000524521 CDC34P49427 236 aaPredicted RBP14.71□□□□□ -0.05
VPS28-203ENST00000524521 FAM74A1Q5RGS3 127 aa14.71□□□□□ -0.05
VPS28-203ENST00000524521 PRR9Q5T870 116 aa14.71□□□□□ -0.05
VPS28-203ENST00000524521 EIF4E3Q8N5X7 224 aaKnown RBP14.71□□□□□ -0.05
VPS28-203ENST00000524521 CMTM2Q8TAZ6 248 aa14.71□□□□□ -0.05
VPS28-203ENST00000524521 RPH3ALQ9UNE2 315 aa14.71□□□□□ -0.05
VPS28-203ENST00000524521 TNFSF18Q9UNG2 199 aa14.71□□□□□ -0.05
VPS28-203ENST00000524521 RNF222A6NCQ9 220 aa14.7□□□□□ -0.06
VPS28-203ENST00000524521 RGS13O14921 159 aa14.7□□□□□ -0.06
VPS28-203ENST00000524521 SERF2P84101 59 aa14.7□□□□□ -0.06
VPS28-203ENST00000524521 Q6ZQT7 251 aa14.7□□□□□ -0.06
VPS28-203ENST00000524521 LINC00467Q9BRT7 94 aa14.7□□□□□ -0.06
VPS28-203ENST00000524521 GSN-AS1Q9NRJ2 163 aa14.7□□□□□ -0.06
VPS28-203ENST00000524521 EPPK1P58107 5090 aaKnown RBP14.69□□□□□ -0.06
VPS28-203ENST00000524521 TRBV7-9A0A0J9YWB2 115 aa14.69□□□□□ -0.06
VPS28-203ENST00000524521 MBP02144 154 aa14.69□□□□□ -0.06
VPS28-203ENST00000524521 ARL14EPLP0DKL9 152 aa14.69□□□□□ -0.06
VPS28-203ENST00000524521 DAZ2Q13117 558 aaKnown RBP14.69□□□□□ -0.06
VPS28-203ENST00000524521 ANXA2RQ3ZCQ2 193 aa14.69□□□□□ -0.06
VPS28-203ENST00000524521 RPL7L1Q6DKI1 246 aaKnown RBP14.69□□□□□ -0.06
VPS28-203ENST00000524521 LINC00612Q8N6U2 182 aa14.69□□□□□ -0.06
VPS28-203ENST00000524521 ZNF680Q8NEM1 530 aa14.69□□□□□ -0.06
VPS28-203ENST00000524521 RAB24Q969Q5 203 aa14.69□□□□□ -0.06
VPS28-203ENST00000524521 SH3BGRL3Q9H299 93 aa14.69□□□□□ -0.06
VPS28-203ENST00000524521 BORCS7-ASMTA0A0B4J1R7 106 aa14.68□□□□□ -0.06
VPS28-203ENST00000524521 NUDT3O95989 172 aa14.68□□□□□ -0.06
VPS28-203ENST00000524521 OR5I1Q13606 314 aa14.68□□□□□ -0.06
VPS28-203ENST00000524521 RNF212Q495C1 297 aa14.68□□□□□ -0.06
VPS28-203ENST00000524521 VPS13DQ5THJ4 4388 aa14.67□□□□□ -0.06
VPS28-203ENST00000524521 IGHV1OR15-1A0A075B7D0 117 aa14.67□□□□□ -0.06
VPS28-203ENST00000524521 M0R2N4 97 aa14.67□□□□□ -0.06
VPS28-203ENST00000524521 STAG3L2P0CL84 134 aa14.67□□□□□ -0.06
VPS28-203ENST00000524521 STAG3L3P0CL85 134 aa14.67□□□□□ -0.06
VPS28-203ENST00000524521 Q6ZTI0 123 aa14.67□□□□□ -0.06
VPS28-203ENST00000524521 C11orf72Q8NBR9 251 aa14.67□□□□□ -0.06
VPS28-203ENST00000524521 GNPNAT1Q96EK6 184 aaPredicted RBP14.67□□□□□ -0.06
VPS28-203ENST00000524521 TP53TG3Q9ULZ0 132 aa14.67□□□□□ -0.06
VPS28-203ENST00000524521 GOLT1AQ6ZVE7 132 aa14.66□□□□□ -0.06
VPS28-203ENST00000524521 ACTR3CQ9C0K3 210 aaPredicted RBP14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms