RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 CT45A10P0DMU9 189 aa11.96□□□□□ -0.5
LSM1-204ENST00000522515 DEFA6Q01524 100 aa11.96□□□□□ -0.5
LSM1-204ENST00000522515 DEFB121Q5J5C9 76 aa11.96□□□□□ -0.5
LSM1-204ENST00000522515 AMTNQ6UX39 209 aa11.96□□□□□ -0.5
LSM1-204ENST00000522515 LINC00322Q6ZN03 302 aaPredicted RBP11.96□□□□□ -0.5
LSM1-204ENST00000522515 CLUHP3Q96NS8 147 aa11.96□□□□□ -0.5
LSM1-204ENST00000522515 ASCL2Q99929 193 aa11.96□□□□□ -0.5
LSM1-204ENST00000522515 LOC102724200A0A096LPH7 203 aaPredicted RBP11.95□□□□□ -0.5
LSM1-204ENST00000522515 TRAV34A0A0B4J273 112 aa11.95□□□□□ -0.5
LSM1-204ENST00000522515 K7EQM0 130 aa11.95□□□□□ -0.5
LSM1-204ENST00000522515 PDE6DO43924 150 aa11.95□□□□□ -0.5
LSM1-204ENST00000522515 IGLV2-11P01706 119 aa11.95□□□□□ -0.5
LSM1-204ENST00000522515 FRMD6-AS1P0C7T7 363 aa11.95□□□□□ -0.5
LSM1-204ENST00000522515 TMEM78Q5T7P6 136 aa11.95□□□□□ -0.5
LSM1-204ENST00000522515 Q8TAT8 98 aa11.95□□□□□ -0.5
LSM1-204ENST00000522515 C2CD4CQ8TF44 421 aa11.95□□□□□ -0.5
LSM1-204ENST00000522515 LINC00477Q96M19 166 aa11.95□□□□□ -0.5
LSM1-204ENST00000522515 SLC35B3Q9H1N7 401 aa11.95□□□□□ -0.5
LSM1-204ENST00000522515 FXYD7P58549 80 aa11.94□□□□□ -0.5
LSM1-204ENST00000522515 SRSF3P84103 164 aaKnown RBP11.94□□□□□ -0.5
LSM1-204ENST00000522515 C11orf52Q96A22 123 aa11.94□□□□□ -0.5
LSM1-204ENST00000522515 ZNF492Q9P255 531 aa11.94□□□□□ -0.5
LSM1-204ENST00000522515 ZNF138P52744 262 aa11.93□□□□□ -0.5
LSM1-204ENST00000522515 FLI1Q01543 452 aaPredicted RBP11.93□□□□□ -0.5
LSM1-204ENST00000522515 TMEM75Q8N9X5 138 aa11.93□□□□□ -0.5
LSM1-204ENST00000522515 MRAPQ8TCY5 172 aa11.93□□□□□ -0.5
LSM1-204ENST00000522515 PPP1R14DQ9NXH3 145 aa11.93□□□□□ -0.5
LSM1-204ENST00000522515 KLF12Q9Y4X4 402 aa11.93□□□□□ -0.5
LSM1-204ENST00000522515 MEGF8Q7Z7M0 2845 aa11.93□□□□□ -0.5
LSM1-204ENST00000522515 M0R2Z0 102 aa11.92□□□□□ -0.5
LSM1-204ENST00000522515 AKR1C3P42330 323 aa11.92□□□□□ -0.5
LSM1-204ENST00000522515 SPINK13Q1W4C9 94 aa11.92□□□□□ -0.5
LSM1-204ENST00000522515 FAM19A4Q96LR4 140 aa11.92□□□□□ -0.5
LSM1-204ENST00000522515 DERL1Q9BUN8 251 aa11.92□□□□□ -0.5
LSM1-204ENST00000522515 PSG8Q9UQ74 426 aa11.92□□□□□ -0.5
LSM1-204ENST00000522515 C9JQL5 133 aa11.92□□□□□ -0.5
LSM1-204ENST00000522515 GIG44P09565 113 aaPredicted RBP11.92□□□□□ -0.5
LSM1-204ENST00000522515 NUTF2P61970 127 aaKnown RBP11.92□□□□□ -0.5
LSM1-204ENST00000522515 MORN3Q6PF18 240 aaPredicted RBP11.92□□□□□ -0.5
LSM1-204ENST00000522515 PRNTQ86SH4 94 aa11.92□□□□□ -0.5
LSM1-204ENST00000522515 TVP23CQ96ET8 276 aa11.92□□□□□ -0.5
LSM1-204ENST00000522515 CSTL1Q9H114 145 aa11.92□□□□□ -0.5
LSM1-204ENST00000522515 MED9Q9NWA0 146 aa11.92□□□□□ -0.5
LSM1-204ENST00000522515 KIR2DL5BA0A0G2JN68 375 aa11.91□□□□□ -0.5
LSM1-204ENST00000522515 KIR2DL5BA0A0G2JPC4 375 aa11.91□□□□□ -0.5
LSM1-204ENST00000522515 SRP19P09132 144 aaKnown RBP11.91□□□□□ -0.5
LSM1-204ENST00000522515 UBE2G1P62253 170 aa11.91□□□□□ -0.5
LSM1-204ENST00000522515 KIR3DS1Q14943 382 aa11.91□□□□□ -0.5
LSM1-204ENST00000522515 TMEM183BQ1AE95 376 aa11.91□□□□□ -0.5
LSM1-204ENST00000522515 KIR2DL5AQ8N109 375 aa11.91□□□□□ -0.5
LSM1-204ENST00000522515 KIR2DL5BQ8NHK3 375 aa11.91□□□□□ -0.5
LSM1-204ENST00000522515 FMC1Q96HJ9 113 aa11.91□□□□□ -0.5
LSM1-204ENST00000522515 ODF3Q96PU9 254 aa11.91□□□□□ -0.5
LSM1-204ENST00000522515 RAB19A4D1S5 217 aa11.9□□□□□ -0.5
LSM1-204ENST00000522515 FBLL1A6NHQ2 334 aaKnown RBP11.9□□□□□ -0.5
LSM1-204ENST00000522515 TMEM250H0YL14 139 aa11.9□□□□□ -0.5
LSM1-204ENST00000522515 J3KRW8 73 aa11.9□□□□□ -0.5
LSM1-204ENST00000522515 CA1P00915 261 aaPredicted RBP11.9□□□□□ -0.5
LSM1-204ENST00000522515 RPL35P42766 123 aaKnown RBP11.9□□□□□ -0.5
LSM1-204ENST00000522515 APOC4P55056 127 aa11.9□□□□□ -0.5
LSM1-204ENST00000522515 PEA15Q15121 130 aa11.9□□□□□ -0.5
LSM1-204ENST00000522515 Q86TA4 180 aa11.9□□□□□ -0.5
LSM1-204ENST00000522515 XCL2Q9UBD3 114 aa11.9□□□□□ -0.5
LSM1-204ENST00000522515 TRAV12-2A0A075B6T6 113 aa11.89□□□□□ -0.51
LSM1-204ENST00000522515 CRXO43186 299 aaPredicted RBP11.89□□□□□ -0.51
LSM1-204ENST00000522515 NDUFS6O75380 124 aaKnown RBP11.89□□□□□ -0.51
LSM1-204ENST00000522515 CRISP2P16562 243 aa11.89□□□□□ -0.51
LSM1-204ENST00000522515 CDKN1BP46527 198 aa11.89□□□□□ -0.51
LSM1-204ENST00000522515 CEBPGP53567 150 aa11.89□□□□□ -0.51
LSM1-204ENST00000522515 ZFAND2AQ8N6M9 145 aa11.89□□□□□ -0.51
LSM1-204ENST00000522515 LENEPQ9Y5L5 61 aa11.89□□□□□ -0.51
LSM1-204ENST00000522515 TRBV7-9A0A0J9YWB2 115 aa11.88□□□□□ -0.51
LSM1-204ENST00000522515 LINC00862A6NCI5 91 aa11.88□□□□□ -0.51
LSM1-204ENST00000522515 S100A9P06702 114 aaKnown RBP11.88□□□□□ -0.51
LSM1-204ENST00000522515 TSPOP30536 169 aa11.88□□□□□ -0.51
LSM1-204ENST00000522515 LEPP41159 167 aa11.88□□□□□ -0.51
LSM1-204ENST00000522515 PRR9Q5T870 116 aa11.88□□□□□ -0.51
LSM1-204ENST00000522515 C8orf49Q96NF6 230 aa11.88□□□□□ -0.51
LSM1-204ENST00000522515 SMDT1Q9H4I9 107 aa11.88□□□□□ -0.51
LSM1-204ENST00000522515 TREM1Q9NP99 234 aa11.88□□□□□ -0.51
LSM1-204ENST00000522515 TRBV6-1A0A0K0K1D8 114 aa11.88□□□□□ -0.51
LSM1-204ENST00000522515 KLLNB2CW77 178 aa11.88□□□□□ -0.51
LSM1-204ENST00000522515 LTAP01374 205 aa11.88□□□□□ -0.51
LSM1-204ENST00000522515 PARLQ9H300 379 aa11.88□□□□□ -0.51
LSM1-204ENST00000522515 TRBV20OR9-2A0A075B6H5 130 aa11.87□□□□□ -0.51
LSM1-204ENST00000522515 GPX1P07203 203 aa11.87□□□□□ -0.51
LSM1-204ENST00000522515 TAS2R60P59551 318 aa11.87□□□□□ -0.51
LSM1-204ENST00000522515 SAPCD1Q5SSQ6 148 aa11.87□□□□□ -0.51
LSM1-204ENST00000522515 GFI1BQ5VTD9 330 aa11.87□□□□□ -0.51
LSM1-204ENST00000522515 COMMD7Q86VX2 200 aa11.87□□□□□ -0.51
LSM1-204ENST00000522515 SBSPONQ8IVN8 264 aa11.87□□□□□ -0.51
LSM1-204ENST00000522515 CSNK1G2-AS1Q8NCQ2 148 aa11.87□□□□□ -0.51
LSM1-204ENST00000522515 IGF2BP2-AS1Q96M15 143 aa11.87□□□□□ -0.51
LSM1-204ENST00000522515 NDFIP1Q9BT67 221 aa11.87□□□□□ -0.51
LSM1-204ENST00000522515 C1QTNF4Q9BXJ3 329 aa11.87□□□□□ -0.51
LSM1-204ENST00000522515 ZFP30Q9Y2G7 519 aa11.87□□□□□ -0.51
LSM1-204ENST00000522515 UBE2CO00762 179 aa11.86□□□□□ -0.51
LSM1-204ENST00000522515 AMBPP02760 352 aa11.86□□□□□ -0.51
LSM1-204ENST00000522515 BTN1A1Q13410 526 aa11.86□□□□□ -0.51
LSM1-204ENST00000522515 ZNF674Q2M3X9 581 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms